mRNA_P-littoralis_Contig115.62.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig115.62.1
Unique NamemRNA_P-littoralis_Contig115.62.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig115.62.1 vs. uniprot
Match: Q8QNQ7_ESV1K (EsV-1-2 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNQ7_ESV1K)

HSP 1 Score: 168 bits (425), Expect = 7.190e-46
Identity = 73/113 (64.60%), Postives = 88/113 (77.88%), Query Frame = 1
Query:  256 GCVISHNAIEVAARRDHLHLVKYIWYTGSLCTQCACIGASSGGKLHVLQWLFPEDKWFPDLVDMSRMLV*NAVIGGFPSIQKWAHRKGQDLAWRFFGTAATYGHFELVEYMHY 594
            GCVISH  +EVAAR  HL +++YIWY GSLC  CAC GAS GG+L VL+WLFP DKWFPD +D SR+LV NAV+GGF  + KWAH KGQ+L     GTAA +GHFELV+Y+H+
Sbjct:   86 GCVISHGTVEVAARCGHLRIIEYIWYVGSLCPHCACTGASMGGQLDVLKWLFPGDKWFPDQLDTSRLLVRNAVVGGFLPVVKWAHEKGQELDSALLGTAAVHGHFELVKYIHF 198          
BLAST of mRNA_P-littoralis_Contig115.62.1 vs. uniprot
Match: A0A6H5KC66_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC66_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 9.240e-25
Identity = 60/104 (57.69%), Postives = 68/104 (65.38%), Query Frame = 1
Query:  685 SIFVNPLGEESLQHITREYIVGSAETNAQ*RCVLQVGLKLYSLEQNINSRAREKYKYVRACIKDDWIAVSKDDAYDEILHMLVENTQEAVERYTDSIPAVYMGH 996
            +I VNPLGEESLQHITREY+V   +         + GLKLYSL QN+N R R+ Y  VR   KD WI VSKD+AYDEIL MLVE T EAVE Y D +    M H
Sbjct:  108 TILVNPLGEESLQHITREYVVDLLKQTLNVGVFFKFGLKLYSLPQNVNFRTRKYYSDVRVRTKDKWITVSKDEAYDEILFMLVEKTHEAVEMYKDGVSEFDMNH 211          
BLAST of mRNA_P-littoralis_Contig115.62.1 vs. uniprot
Match: A0A6H5JH58_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH58_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 2.110e-24
Identity = 60/104 (57.69%), Postives = 68/104 (65.38%), Query Frame = 1
Query:  685 SIFVNPLGEESLQHITREYIVGSAETNAQ*RCVLQVGLKLYSLEQNINSRAREKYKYVRACIKDDWIAVSKDDAYDEILHMLVENTQEAVERYTDSIPAVYMGH 996
            +I VNPLGEESLQHITREY+V   +         + GLKLYSL QN+N R R+ Y  VR   KD WI VSKD+AYDEIL MLVE T EAVE Y D +    M H
Sbjct: 2236 TILVNPLGEESLQHITREYVVDLLKQTLNVGVFFKFGLKLYSLPQNVNFRTRKYYSDVRVRTKDKWITVSKDEAYDEILFMLVEKTHEAVEMYRDGVSEFDMNH 2339          
BLAST of mRNA_P-littoralis_Contig115.62.1 vs. uniprot
Match: Q8QN59_ESV1K (EsV-1-231 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QN59_ESV1K)

HSP 1 Score: 107 bits (267), Expect = 2.450e-22
Identity = 65/154 (42.21%), Postives = 83/154 (53.90%), Query Frame = 1
Query:  547 TAATYGHFELVEYMHYNQ---KSREVWANTPFRPKTSAESQGQTQTPMPSIFVNPLGEESLQHITREYIVGSAETNAQ*RCVLQVGLKLYSLEQNINSRAREKYKYVRACI-KDDWIAVSKDDAYDEILHMLVENTQEAVERYTDSIPAVYMGH 996
            T A  GH  +V    Y+    + +E W   P R     E +  T     ++FVNPLG+ESLQHIT  Y+              + GLKLYSL QNIN RAR+  K  R C  +  WI V +D+AYDEIL +LVE T+EAV  +  +IPA Y  H
Sbjct:  159 TKALEGHMVIVHISTYDAPVGELQEEWRAKPVRGNKKVEVKADTT----AVFVNPLGKESLQHITSNYVADLLRPLPGIDVFYKFGLKLYSLHQNINFRARKGDKNARVCCSRKGWITVPRDEAYDEILQILVEKTREAVSMFRQTIPAYYFDH 308          
BLAST of mRNA_P-littoralis_Contig115.62.1 vs. uniprot
Match: D8LP42_ECTSI (EsV-1-231 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP42_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 8.710e-21
Identity = 62/154 (40.26%), Postives = 81/154 (52.60%), Query Frame = 1
Query:  547 TAATYGHFELVEYMHYNQKSREV---WANTPFRPKTSAESQGQTQTPMPSIFVNPLGEESLQHITREYIVGSAETNAQ*RCVLQVGLKLYSLEQNINSRAREKYKYVRACI-KDDWIAVSKDDAYDEILHMLVENTQEAVERYTDSIPAVYMGH 996
            T A  GH  +     Y+    E+   W   P R     E +  T     ++FVNPLG+ESL+HI+  Y+              + GLKLYSL QNIN RAR+  K  R C  +  WI V +D+AYDEIL +LVE T+EAV  +  +IPA Y  H
Sbjct:   61 TKALEGHMVIEHISTYDAPGGELQEEWRAKPVRGNKKIEIKSDTT----AVFVNPLGKESLRHISGNYVADLLRPLPGIDVFYKFGLKLYSLHQNINFRARKGDKNARVCCSRKGWITVPRDEAYDEILQILVEKTREAVSMFRQTIPAYYFDH 210          
BLAST of mRNA_P-littoralis_Contig115.62.1 vs. uniprot
Match: A0A6H5K0V6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0V6_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 1.470e-13
Identity = 46/100 (46.00%), Postives = 61/100 (61.00%), Query Frame = 1
Query:  685 SIFVNPLGEESLQHITREYIVGSAETNAQ*RCVLQVGLKLYSLEQNINSRAREKYKYVRACI-KDDWIAVSKDDAYDEILHMLVENTQEAVE---RYTDS 972
            ++FV+PLG+ESLQH T ++I              + GLKLYSL QNIN R R+  K  R C  +  WI V +++AYDEIL +LV+ T+EAV     Y DS
Sbjct:  106 AVFVHPLGKESLQHATSDFIADLLRPLPGIDVFNKFGLKLYSLHQNINFRVRKGDKNARVCCSRKGWITVPREEAYDEILQILVKKTREAVSIILAYKDS 205          
BLAST of mRNA_P-littoralis_Contig115.62.1 vs. uniprot
Match: A0A6H5JWA4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWA4_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 2.630e-8
Identity = 35/105 (33.33%), Postives = 58/105 (55.24%), Query Frame = 1
Query:  670 QTPMPSIFVNPLGEESLQHITREYIVGSAETNAQ*RCVLQVGLKLYSLEQNINSRAREKYKYVRACIKDD--WIAVSKDDAYDEILHMLVENTQEAVERYTDSIP 978
            +T +  + VNP+G+ESL HIT E I      +     + + G KLY+LE+N+N +   K  ++   +++D  W+   K   +  +L  L +N +EAV+ Y D IP
Sbjct:  124 KTAVTLVIVNPIGKESLDHITPELIQELLAGHHGPDVIFRFGAKLYALEENMNFKTDVKSGFISGRLEEDSAWVTQRKTVGFSMLLENLKDNFEEAVQTYVDKIP 228          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig115.62.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
Q8QNQ7_ESV1K7.190e-4664.60EsV-1-2 n=1 Tax=Ectocarpus siliculosus virus 1 (is... [more]
A0A6H5KC66_9PHAE9.240e-2557.69Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JH58_9PHAE2.110e-2457.69Reverse transcriptase domain-containing protein n=... [more]
Q8QN59_ESV1K2.450e-2242.21EsV-1-231 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
D8LP42_ECTSI8.710e-2140.26EsV-1-231 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5K0V6_9PHAE1.470e-1346.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWA4_9PHAE2.630e-833.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig115contigP-littoralis_Contig115:153169..154324 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1156
Hectar predicted targeting categoryother localisation
Exons1
Cds size465
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789469.9499087-CDS-P-littoralis_Contig115:153168..1536331680789469.9499087-CDS-P-littoralis_Contig115:153168..153633Pylaiella littoralis U1_48CDSP-littoralis_Contig115 153169..153633 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789469.959036-UTR-P-littoralis_Contig115:153633..1543241680789469.959036-UTR-P-littoralis_Contig115:153633..154324Pylaiella littoralis U1_48UTRP-littoralis_Contig115 153634..154324 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig115.62.1prot_P-littoralis_Contig115.62.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig115 153169..153633 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig115.62.1

>prot_P-littoralis_Contig115.62.1 ID=prot_P-littoralis_Contig115.62.1|Name=mRNA_P-littoralis_Contig115.62.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=155bp
MKSPTEIDLPVSRCSASCQTASTRTSHPFASCSPRNTPRKLRRSARTRRS
TTWSSTSKTGCRYQRTCPSGQRSLEGLICLSSRSSGCVISHNAIEVAARR
DHLHLVKYIWYTGSLCTQCACIGASSGGKLHVLQWLFPEDKWFPDLVDMS
RMLV*
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mRNA from alignment at P-littoralis_Contig115:153169..154324+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig115.62.1 ID=mRNA_P-littoralis_Contig115.62.1|Name=mRNA_P-littoralis_Contig115.62.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1156bp|location=Sequence derived from alignment at P-littoralis_Contig115:153169..154324+ (Pylaiella littoralis U1_48)
ATGAAAAGCCCCACGGAAATCGATCTGCCCGTGTCCCGGTGCTCGGCTTC ATGCCAGACAGCAAGTACTCGGACCTCGCACCCGTTCGCGAGCTGTTCTC CGCGAAATACGCCCCGAAAACTACGCAGATCAGCGAGGACACGTCGTTCA ACAACATGGTCGAGTACTTCTAAAACGGGATGCCGATATCAGAGAACGTG CCCTTCAGGGCAGCGGAGCTTGGAAGGCTTGATTTGTTTGAGCTCGCGGT CGAGCGGGTGTGTCATCAGTCACAATGCAATTGAGGTTGCCGCGAGGCGC GACCACCTACACCTTGTTAAGTACATATGGTACACCGGCTCCCTGTGCAC ACAGTGCGCGTGCATCGGAGCTTCCAGCGGTGGAAAGTTGCATGTTCTGC AGTGGTTGTTTCCAGAGGACAAGTGGTTCCCGGATCTTGTCGATATGAGT AGGATGTTGGTCTGAAACGCTGTCATCGGGGGCTTTCCTTCAATTCAAAA GTGGGCGCACAGAAAAGGGCAAGACTTAGCTTGGCGCTTCTTTGGTACCG CGGCCACTTACGGTCATTTCGAGCTCGTCGAGTACATGCACTACAACCAA AAAAGCAGGGAGGTTTGGGCAAATACCCCATTTCGGCCAAAAACAAGCGC AGAGTCACAAGGGCAAACGCAGACACCAATGCCATCCATATTCGTGAATC CCCTGGGCGAGGAGTCTCTGCAACACATCACGCGAGAATACATCGTGGGA TCTGCTGAAACAAATGCTCAATAACGATGCGTTCTTCAAGTTGGCTTAAA GCTGTACTCATTGGAACAAAATATTAACTCTCGAGCACGGGAAAAGTACA AATACGTCCGAGCGTGTATCAAAGATGATTGGATAGCCGTGTCAAAGGAC GACGCGTACGACGAAATTCTGCACATGCTGGTTGAAAATACCCAAGAAGC TGTTGAAAGGTACACGGACAGTATCCCAGCAGTCTACATGGGTCACGTAT GTACCGGTTGTTTTCGAGCCCAAGGACTTCCCTGTGCCCAGTTTGAGGAA AGTGAACGAAAAATATCGCAACAAGGGTCTGGACATGATCGCTGTGAGCG TGAACGACCGACTCAAGAGGCTGCGTAGTTGGGGTGGAAAGAAAATTAAG CTTGTT
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Coding sequence (CDS) from alignment at P-littoralis_Contig115:153169..154324+

>mRNA_P-littoralis_Contig115.62.1 ID=mRNA_P-littoralis_Contig115.62.1|Name=mRNA_P-littoralis_Contig115.62.1|organism=Pylaiella littoralis U1_48|type=CDS|length=465bp|location=Sequence derived from alignment at P-littoralis_Contig115:153169..154324+ (Pylaiella littoralis U1_48)
ATGAAAAGCCCCACGGAAATCGATCTGCCCGTGTCCCGGTGCTCGGCTTC
ATGCCAGACAGCAAGTACTCGGACCTCGCACCCGTTCGCGAGCTGTTCTC
CGCGAAATACGCCCCGAAAACTACGCAGATCAGCGAGGACACGTCGTTCA
ACAACATGGTCGAGTACTTCTAAAACGGGATGCCGATATCAGAGAACGTG
CCCTTCAGGGCAGCGGAGCTTGGAAGGCTTGATTTGTTTGAGCTCGCGGT
CGAGCGGGTGTGTCATCAGTCACAATGCAATTGAGGTTGCCGCGAGGCGC
GACCACCTACACCTTGTTAAGTACATATGGTACACCGGCTCCCTGTGCAC
ACAGTGCGCGTGCATCGGAGCTTCCAGCGGTGGAAAGTTGCATGTTCTGC
AGTGGTTGTTTCCAGAGGACAAGTGGTTCCCGGATCTTGTCGATATGAGT
AGGATGTTGGTCTGA
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