mRNA_P-littoralis_Contig115.62.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig115.62.1 vs. uniprot
Match: Q8QNQ7_ESV1K (EsV-1-2 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNQ7_ESV1K) HSP 1 Score: 168 bits (425), Expect = 7.190e-46 Identity = 73/113 (64.60%), Postives = 88/113 (77.88%), Query Frame = 1
Query: 256 GCVISHNAIEVAARRDHLHLVKYIWYTGSLCTQCACIGASSGGKLHVLQWLFPEDKWFPDLVDMSRMLV*NAVIGGFPSIQKWAHRKGQDLAWRFFGTAATYGHFELVEYMHY 594
GCVISH +EVAAR HL +++YIWY GSLC CAC GAS GG+L VL+WLFP DKWFPD +D SR+LV NAV+GGF + KWAH KGQ+L GTAA +GHFELV+Y+H+
Sbjct: 86 GCVISHGTVEVAARCGHLRIIEYIWYVGSLCPHCACTGASMGGQLDVLKWLFPGDKWFPDQLDTSRLLVRNAVVGGFLPVVKWAHEKGQELDSALLGTAAVHGHFELVKYIHF 198
BLAST of mRNA_P-littoralis_Contig115.62.1 vs. uniprot
Match: A0A6H5KC66_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC66_9PHAE) HSP 1 Score: 116 bits (290), Expect = 9.240e-25 Identity = 60/104 (57.69%), Postives = 68/104 (65.38%), Query Frame = 1
Query: 685 SIFVNPLGEESLQHITREYIVGSAETNAQ*RCVLQVGLKLYSLEQNINSRAREKYKYVRACIKDDWIAVSKDDAYDEILHMLVENTQEAVERYTDSIPAVYMGH 996
+I VNPLGEESLQHITREY+V + + GLKLYSL QN+N R R+ Y VR KD WI VSKD+AYDEIL MLVE T EAVE Y D + M H
Sbjct: 108 TILVNPLGEESLQHITREYVVDLLKQTLNVGVFFKFGLKLYSLPQNVNFRTRKYYSDVRVRTKDKWITVSKDEAYDEILFMLVEKTHEAVEMYKDGVSEFDMNH 211
BLAST of mRNA_P-littoralis_Contig115.62.1 vs. uniprot
Match: A0A6H5JH58_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH58_9PHAE) HSP 1 Score: 116 bits (290), Expect = 2.110e-24 Identity = 60/104 (57.69%), Postives = 68/104 (65.38%), Query Frame = 1
Query: 685 SIFVNPLGEESLQHITREYIVGSAETNAQ*RCVLQVGLKLYSLEQNINSRAREKYKYVRACIKDDWIAVSKDDAYDEILHMLVENTQEAVERYTDSIPAVYMGH 996
+I VNPLGEESLQHITREY+V + + GLKLYSL QN+N R R+ Y VR KD WI VSKD+AYDEIL MLVE T EAVE Y D + M H
Sbjct: 2236 TILVNPLGEESLQHITREYVVDLLKQTLNVGVFFKFGLKLYSLPQNVNFRTRKYYSDVRVRTKDKWITVSKDEAYDEILFMLVEKTHEAVEMYRDGVSEFDMNH 2339
BLAST of mRNA_P-littoralis_Contig115.62.1 vs. uniprot
Match: Q8QN59_ESV1K (EsV-1-231 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QN59_ESV1K) HSP 1 Score: 107 bits (267), Expect = 2.450e-22 Identity = 65/154 (42.21%), Postives = 83/154 (53.90%), Query Frame = 1
Query: 547 TAATYGHFELVEYMHYNQ---KSREVWANTPFRPKTSAESQGQTQTPMPSIFVNPLGEESLQHITREYIVGSAETNAQ*RCVLQVGLKLYSLEQNINSRAREKYKYVRACI-KDDWIAVSKDDAYDEILHMLVENTQEAVERYTDSIPAVYMGH 996
T A GH +V Y+ + +E W P R E + T ++FVNPLG+ESLQHIT Y+ + GLKLYSL QNIN RAR+ K R C + WI V +D+AYDEIL +LVE T+EAV + +IPA Y H
Sbjct: 159 TKALEGHMVIVHISTYDAPVGELQEEWRAKPVRGNKKVEVKADTT----AVFVNPLGKESLQHITSNYVADLLRPLPGIDVFYKFGLKLYSLHQNINFRARKGDKNARVCCSRKGWITVPRDEAYDEILQILVEKTREAVSMFRQTIPAYYFDH 308
BLAST of mRNA_P-littoralis_Contig115.62.1 vs. uniprot
Match: D8LP42_ECTSI (EsV-1-231 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP42_ECTSI) HSP 1 Score: 101 bits (251), Expect = 8.710e-21 Identity = 62/154 (40.26%), Postives = 81/154 (52.60%), Query Frame = 1
Query: 547 TAATYGHFELVEYMHYNQKSREV---WANTPFRPKTSAESQGQTQTPMPSIFVNPLGEESLQHITREYIVGSAETNAQ*RCVLQVGLKLYSLEQNINSRAREKYKYVRACI-KDDWIAVSKDDAYDEILHMLVENTQEAVERYTDSIPAVYMGH 996
T A GH + Y+ E+ W P R E + T ++FVNPLG+ESL+HI+ Y+ + GLKLYSL QNIN RAR+ K R C + WI V +D+AYDEIL +LVE T+EAV + +IPA Y H
Sbjct: 61 TKALEGHMVIEHISTYDAPGGELQEEWRAKPVRGNKKIEIKSDTT----AVFVNPLGKESLRHISGNYVADLLRPLPGIDVFYKFGLKLYSLHQNINFRARKGDKNARVCCSRKGWITVPRDEAYDEILQILVEKTREAVSMFRQTIPAYYFDH 210
BLAST of mRNA_P-littoralis_Contig115.62.1 vs. uniprot
Match: A0A6H5K0V6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0V6_9PHAE) HSP 1 Score: 80.5 bits (197), Expect = 1.470e-13 Identity = 46/100 (46.00%), Postives = 61/100 (61.00%), Query Frame = 1
Query: 685 SIFVNPLGEESLQHITREYIVGSAETNAQ*RCVLQVGLKLYSLEQNINSRAREKYKYVRACI-KDDWIAVSKDDAYDEILHMLVENTQEAVE---RYTDS 972
++FV+PLG+ESLQH T ++I + GLKLYSL QNIN R R+ K R C + WI V +++AYDEIL +LV+ T+EAV Y DS
Sbjct: 106 AVFVHPLGKESLQHATSDFIADLLRPLPGIDVFNKFGLKLYSLHQNINFRVRKGDKNARVCCSRKGWITVPREEAYDEILQILVKKTREAVSIILAYKDS 205
BLAST of mRNA_P-littoralis_Contig115.62.1 vs. uniprot
Match: A0A6H5JWA4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWA4_9PHAE) HSP 1 Score: 65.5 bits (158), Expect = 2.630e-8 Identity = 35/105 (33.33%), Postives = 58/105 (55.24%), Query Frame = 1
Query: 670 QTPMPSIFVNPLGEESLQHITREYIVGSAETNAQ*RCVLQVGLKLYSLEQNINSRAREKYKYVRACIKDD--WIAVSKDDAYDEILHMLVENTQEAVERYTDSIP 978
+T + + VNP+G+ESL HIT E I + + + G KLY+LE+N+N + K ++ +++D W+ K + +L L +N +EAV+ Y D IP
Sbjct: 124 KTAVTLVIVNPIGKESLDHITPELIQELLAGHHGPDVIFRFGAKLYALEENMNFKTDVKSGFISGRLEEDSAWVTQRKTVGFSMLLENLKDNFEEAVQTYVDKIP 228 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig115.62.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig115.62.1 >prot_P-littoralis_Contig115.62.1 ID=prot_P-littoralis_Contig115.62.1|Name=mRNA_P-littoralis_Contig115.62.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=155bp MKSPTEIDLPVSRCSASCQTASTRTSHPFASCSPRNTPRKLRRSARTRRSback to top mRNA from alignment at P-littoralis_Contig115:153169..154324+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig115.62.1 ID=mRNA_P-littoralis_Contig115.62.1|Name=mRNA_P-littoralis_Contig115.62.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1156bp|location=Sequence derived from alignment at P-littoralis_Contig115:153169..154324+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig115:153169..154324+ >mRNA_P-littoralis_Contig115.62.1 ID=mRNA_P-littoralis_Contig115.62.1|Name=mRNA_P-littoralis_Contig115.62.1|organism=Pylaiella littoralis U1_48|type=CDS|length=465bp|location=Sequence derived from alignment at P-littoralis_Contig115:153169..154324+ (Pylaiella littoralis U1_48)back to top |