mRNA_P-littoralis_Contig115.42.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig115.42.1
Unique NamemRNA_P-littoralis_Contig115.42.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig115.42.1 vs. uniprot
Match: A0A6H5KZP5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZP5_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 1.050e-30
Identity = 59/88 (67.05%), Postives = 70/88 (79.55%), Query Frame = 1 
Query:    1 SRANHNRNARRGQDYIASGYRARIMLPITEGERSATMRPSSWNTPAAVLFPRYISYDRPRAAPVVEGSASQESTPASAGQTIEVVNPY 264
            SRANHNR +R+G D+IASG R +I+LP+T+ ERSATMR  S N  +AV+FPRY+S  +PRA P VEGSASQESTPASAGQ   V NPY
Sbjct:   98 SRANHNRTSRKGNDFIASGVRGQIILPVTDEERSATMRAPSRNPASAVMFPRYLSVVKPRADPTVEGSASQESTPASAGQIPVVFNPY 185
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BLAST of mRNA_P-littoralis_Contig115.42.1 vs. uniprot
Match: A0A6H5K630_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K630_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 1.850e-29
Identity = 57/88 (64.77%), Postives = 68/88 (77.27%), Query Frame = 1 
Query:    1 SRANHNRNARRGQDYIASGYRARIMLPITEGERSATMRPSSWNTPAAVLFPRYISYDRPRAAPVVEGSASQESTPASAGQTIEVVNPY 264
            SRANHNR +R+G D+IASG R +I+LP+T+ ERSATMR  S N  +AV+F RY+S  +PRA P VEG ASQESTPASAGQT  V N Y
Sbjct:   33 SRANHNRTSRKGSDFIASGVRGQIILPVTDEERSATMRAPSRNPASAVMFSRYLSVVKPRADPTVEGGASQESTPASAGQTPVVFNSY 120
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BLAST of mRNA_P-littoralis_Contig115.42.1 vs. uniprot
Match: A0A6H5K5X1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5X1_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 1.140e-28
Identity = 60/88 (68.18%), Postives = 70/88 (79.55%), Query Frame = 1 
Query:    1 SRANHNRNARRGQDYIASGYRARIMLPITEGERSATMRPSSWNTPAAVLFPRYISYDRPRAAPVVEGSASQESTPASAGQTIEVVNPY 264
            SRA HN+NAR+G+D+IASG R RI+LP+T+ ERSATMR  S N  +AV+FPRYIS D+P A PVV GSASQEST A AGQT  V NPY
Sbjct:  571 SRAKHNQNARKGEDFIASGIRGRIILPVTDAERSATMRAPSKNPASAVMFPRYISIDKPHADPVVGGSASQESTAAPAGQTPVVFNPY 658
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BLAST of mRNA_P-littoralis_Contig115.42.1 vs. uniprot
Match: A0A6H5KB63_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB63_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 5.190e-20
Identity = 41/59 (69.49%), Postives = 50/59 (84.75%), Query Frame = 1 
Query:    1 SRANHNRNARRGQDYIASGYRARIMLPITEGERSATMRPSSWNTPAAVLFPRYISYDRP 177
            SRANHN+NAR+G+D+IASG R RIMLP+T+ ERSATMR  S N  +AV+FPRYIS D+P
Sbjct:   33 SRANHNKNARKGEDFIASGIRGRIMLPVTDAERSATMRAPSRNPVSAVMFPRYISIDKP 91
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BLAST of mRNA_P-littoralis_Contig115.42.1 vs. uniprot
Match: A0A6H5K731_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K731_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 4.810e-19
Identity = 42/65 (64.62%), Postives = 53/65 (81.54%), Query Frame = 1 
Query:    1 SRANHNRNARRGQDYIASGYRARIMLPITEGERSATMRPSSWNTPAAVLFPRYISYDRPRAAPVV 195
            SRANH +NAR+G+D+IASG R RIMLP+++ ERSATMR  S +  +AV+FPRYIS D+P A PVV
Sbjct:   46 SRANHIKNARKGEDFIASGIRGRIMLPVSDAERSATMRAPSRDPVSAVMFPRYISIDKPHADPVV 110
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BLAST of mRNA_P-littoralis_Contig115.42.1 vs. uniprot
Match: A0A6H5JS87_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS87_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 3.580e-17
Identity = 38/59 (64.41%), Postives = 49/59 (83.05%), Query Frame = 1 
Query:    1 SRANHNRNARRGQDYIASGYRARIMLPITEGERSATMRPSSWNTPAAVLFPRYISYDRP 177
            SRANHN+N R+G+++IASG R RIMLP+T+ ERSATMR  S N+ +AV+FPRYIS  +P
Sbjct:   98 SRANHNKNERKGEEFIASGIRGRIMLPVTDAERSATMRAPSRNSVSAVMFPRYISIHKP 156
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BLAST of mRNA_P-littoralis_Contig115.42.1 vs. uniprot
Match: A0A6H5JR14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR14_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 1.560e-15
Identity = 40/74 (54.05%), Postives = 53/74 (71.62%), Query Frame = 1 
Query:    4 RANHNRNARRGQDYIASGYRARIMLPITEGERSATMRPSSWNTPAAVLFPRYISYDRPRAAPVVEGSASQESTP 225
            RAN+NRNAR+G+D++ASGYRA +MLP+ EGERS  +R  + ++  AVL P YIS   P A PV +GSA +   P
Sbjct:  702 RANYNRNARKGRDFVASGYRAEVMLPVGEGERSVRIRARTKDSDEAVLSPWYISVAAPGATPVADGSAVESGAP 775
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BLAST of mRNA_P-littoralis_Contig115.42.1 vs. uniprot
Match: A0A6H5K6I9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6I9_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 4.840e-15
Identity = 46/88 (52.27%), Postives = 57/88 (64.77%), Query Frame = 1 
Query:    1 SRANHNRNARRGQDYIASGYRARIMLPITEGERSATMRPSSWNTPAAVLFPRYISYDRPRAAPVVEGSASQESTPASAGQTIEVVNPY 264
            SRAN NRNAR G D+I S YR+RIML +T+ E +  +R  S N+P AVL PRYIS +   AAPVVE        PA+ G +  +VNPY
Sbjct:  279 SRANFNRNARSGNDFIDSDYRSRIMLAVTQAEAAENVRARSRNSPNAVLCPRYISVEPLAAAPVVEAPV-----PAAQGSST-IVNPY 360
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BLAST of mRNA_P-littoralis_Contig115.42.1 vs. uniprot
Match: A0A6H5L2C2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2C2_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 5.550e-15
Identity = 36/59 (61.02%), Postives = 47/59 (79.66%), Query Frame = 1 
Query:    1 SRANHNRNARRGQDYIASGYRARIMLPITEGERSATMRPSSWNTPAAVLFPRYISYDRP 177
            SRANHNR +R+G D+IASG R +I+LP+T+ ERSATMR  S N  +AV+FPRY+S  +P
Sbjct:  108 SRANHNRTSRKGNDFIASGVRGQIILPVTDEERSATMRAPSRNPASAVMFPRYLSVVKP 166
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig115.42.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5KZP5_9PHAE1.050e-3067.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K630_9PHAE1.850e-2964.77Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5X1_9PHAE1.140e-2868.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KB63_9PHAE5.190e-2069.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K731_9PHAE4.810e-1964.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JS87_9PHAE3.580e-1764.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JR14_9PHAE1.560e-1554.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6I9_9PHAE4.840e-1552.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L2C2_9PHAE5.550e-1561.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig115contigP-littoralis_Contig115:127166..127494 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size329
Hectar predicted targeting categoryother localisation
Exons1
Cds size201
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789469.603247-UTR-P-littoralis_Contig115:127165..1272371680789469.603247-UTR-P-littoralis_Contig115:127165..127237Pylaiella littoralis U1_48UTRP-littoralis_Contig115 127166..127237 +
1680789469.626052-UTR-P-littoralis_Contig115:127438..1274941680789469.626052-UTR-P-littoralis_Contig115:127438..127494Pylaiella littoralis U1_48UTRP-littoralis_Contig115 127439..127494 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789469.6142385-CDS-P-littoralis_Contig115:127237..1274381680789469.6142385-CDS-P-littoralis_Contig115:127237..127438Pylaiella littoralis U1_48CDSP-littoralis_Contig115 127238..127438 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig115.42.1prot_P-littoralis_Contig115.42.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig115 127238..127438 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig115.42.1

>prot_P-littoralis_Contig115.42.1 ID=prot_P-littoralis_Contig115.42.1|Name=mRNA_P-littoralis_Contig115.42.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=67bp
MLPITEGERSATMRPSSWNTPAAVLFPRYISYDRPRAAPVVEGSASQEST
PASAGQTIEVVNPYTR*
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mRNA from alignment at P-littoralis_Contig115:127166..127494+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig115.42.1 ID=mRNA_P-littoralis_Contig115.42.1|Name=mRNA_P-littoralis_Contig115.42.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=329bp|location=Sequence derived from alignment at P-littoralis_Contig115:127166..127494+ (Pylaiella littoralis U1_48)
TCCCGCGCAAACCACAATCGGAATGCGCGGAGAGGACAGGACTACATCGC
GTCCGGATACCGGGCACGGATCATGCTCCCAATAACGGAAGGAGAGCGGT
CTGCTACCATGCGGCCTAGCTCCTGGAACACTCCCGCAGCTGTTCTGTTC
CCGCGGTACATCAGCTACGACAGACCCCGCGCGGCCCCTGTGGTAGAGGG
TAGTGCATCCCAGGAGTCGACGCCCGCCTCTGCAGGCCAGACCATCGAGG
TCGTCAACCCATACACTCGTTAATAGGTTTAGAAGGGGTAGGGTGACAAT
GGAGAGAGAGGACGAGAAGATCGCAAGCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig115:127166..127494+

>mRNA_P-littoralis_Contig115.42.1 ID=mRNA_P-littoralis_Contig115.42.1|Name=mRNA_P-littoralis_Contig115.42.1|organism=Pylaiella littoralis U1_48|type=CDS|length=201bp|location=Sequence derived from alignment at P-littoralis_Contig115:127166..127494+ (Pylaiella littoralis U1_48)
ATGCTCCCAATAACGGAAGGAGAGCGGTCTGCTACCATGCGGCCTAGCTC
CTGGAACACTCCCGCAGCTGTTCTGTTCCCGCGGTACATCAGCTACGACA
GACCCCGCGCGGCCCCTGTGGTAGAGGGTAGTGCATCCCAGGAGTCGACG
CCCGCCTCTGCAGGCCAGACCATCGAGGTCGTCAACCCATACACTCGTTA
A
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