mRNA_P-littoralis_Contig115.38.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig115.38.1
Unique NamemRNA_P-littoralis_Contig115.38.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig115.38.1 vs. uniprot
Match: A0A6H5K2U9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2U9_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 3.400e-36
Identity = 73/139 (52.52%), Postives = 94/139 (67.63%), Query Frame = 1 
Query:   25 NATIRVDHASKRASLVDVAKMVLDCGEDEAKAELNKLLGPTADADEDCPRLQIDNRGGYTQVANVDFLIEIIWLLPGAIPDDVRRKMCHAVCHLCEGDASLVTDTEGRHIAMREASLRAHAQGGKKD---NMPAGFELL 432
            +A IRVD AS + S+ DVAK+VL C ++EA+  + KLLG T+D D D  R+QI+NRG  T VA V+ L+EI+WLLPG I DDVRR + H VC    GD  LV ++E RHIAMREASL A+A     D   ++P G+  L
Sbjct:    2 DAVIRVDRASNKGSVTDVAKLVLKCDDEEAEKAVRKLLGATSDTDRDFLRVQINNRGRLTLVAGVNMLVEIVWLLPGVIADDVRRDISHKVCKALGGDTRLVEESETRHIAMREASLHANASKVATDQSRDIPPGYSFL 140
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BLAST of mRNA_P-littoralis_Contig115.38.1 vs. uniprot
Match: B5LWM3_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWM3_9PHYC)

HSP 1 Score: 101 bits (251), Expect = 7.930e-22
Identity = 72/232 (31.03%), Postives = 112/232 (48.28%), Query Frame = 1 
Query:   25 NATIRVDHASKRASLVDVAKMVLDCGEDEAKAELNKL----LGPTADADEDCPRLQIDNRGGYTQVANVDFLIEIIWLLPGAIPDDVRRKMCHAVCHLCEGDASLVTDTEGRHIAMR--------EASLRAHAQGGKKDN---MPAGFELLGVQDQQELAKEMVQQFLKGRDQDLRRKALELEERKISLKRKHCDTVIYMYRSLEELDITLDSRAQVDILDTIAQITKPDIS 675
            NATIR+D+A+++ S++DV +MVL C    A     +L    L   A+    C  L+I+ +G  T VAN   L+EII+ LPG +  + RRK    +C L  GD +LV + E R   +         +A L   ++    D+   MP GF  L    ++ +A E+V                      ++LKR+  + +I  Y SL  L + LD R  V+I D ++ +TK  +S
Sbjct:   10 NATIRIDNATQKGSVIDVIRMVLRCDASSANTAFRRLKDDMLKSRAEFGAACSHLRINGKGRLTPVANAKTLVEIIFSLPGKLAREFRRKSASQICRLLGGDPTLVFEIEQRRAELESTPKGRVTQAFLLGESRHDTDDDFTGMPVGFRYLEESQRRAVAGEVVA---------------------LALKRQRIEDMIGSYASLRSLGVELDPRTMVEIRDNVSLLTKRKLS 220
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BLAST of mRNA_P-littoralis_Contig115.38.1 vs. uniprot
Match: A0A835YNN1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNN1_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 1.370e-9
Identity = 37/114 (32.46%), Postives = 60/114 (52.63%), Query Frame = 1 
Query:   28 ATIRVDHASKRASLVDVAKMVL-DCGEDEAKAELNKLLGPTADADEDCPRLQIDNRGGYTQVANVDFLIEIIWLLPGAIPDDVRRKMCHAVCHLCEGDASLVTDTEGRHIAMRE 366
            ATIRVD A+ + S++DV ++V  D     A     +L     +    C  L+I+ +G  + VA+   L+EI++ LPG    + RR     VC +  GD S+V + E RH  +++
Sbjct:    8 ATIRVDAATNKGSVIDVIRLVHPDIESKHASTYFTRLTTEIPEIATQCGLLRINGKGKPSPVADAKTLVEIVFSLPGKAAREFRRTSAKTVCRVLGGDLSIVQEIEQRHHTLQQ 121
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig115.38.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K2U9_9PHAE3.400e-3652.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
B5LWM3_9PHYC7.930e-2231.03Uncharacterized protein n=1 Tax=Feldmannia species... [more]
A0A835YNN1_9STRA1.370e-932.46Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig115contigP-littoralis_Contig115:104167..104853 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LP49
Model size687
Max annot lvl2880.D8LP49|-
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.8e-33
EggNOG OGs2EUDG@1|root,2SWJG@2759|Eukaryota
Cds size687
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789469.4271321-CDS-P-littoralis_Contig115:104166..1048531680789469.4271321-CDS-P-littoralis_Contig115:104166..104853Pylaiella littoralis U1_48CDSP-littoralis_Contig115 104167..104853 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig115.38.1prot_P-littoralis_Contig115.38.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig115 104167..104853 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig115.38.1

>prot_P-littoralis_Contig115.38.1 ID=prot_P-littoralis_Contig115.38.1|Name=mRNA_P-littoralis_Contig115.38.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=229bp
MATATSLDNATIRVDHASKRASLVDVAKMVLDCGEDEAKAELNKLLGPTA
DADEDCPRLQIDNRGGYTQVANVDFLIEIIWLLPGAIPDDVRRKMCHAVC
HLCEGDASLVTDTEGRHIAMREASLRAHAQGGKKDNMPAGFELLGVQDQQ
ELAKEMVQQFLKGRDQDLRRKALELEERKISLKRKHCDTVIYMYRSLEEL
DITLDSRAQVDILDTIAQITKPDISEVV*
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mRNA from alignment at P-littoralis_Contig115:104167..104853+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig115.38.1 ID=mRNA_P-littoralis_Contig115.38.1|Name=mRNA_P-littoralis_Contig115.38.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=687bp|location=Sequence derived from alignment at P-littoralis_Contig115:104167..104853+ (Pylaiella littoralis U1_48)
ATGGCCACCGCAACGAGCCTCGACAATGCTACTATTCGCGTCGACCATGC
CTCCAAAAGGGCATCGCTGGTAGATGTCGCAAAGATGGTATTGGACTGTG
GCGAAGACGAAGCCAAAGCTGAGCTGAACAAGCTGCTCGGGCCAACCGCT
GACGCGGACGAAGACTGTCCGAGACTTCAAATCGACAACAGGGGAGGGTA
TACGCAAGTCGCGAACGTTGATTTTCTGATCGAAATCATCTGGTTGCTAC
CGGGCGCAATCCCGGACGACGTTCGCCGGAAGATGTGCCACGCGGTGTGC
CATTTATGCGAAGGGGATGCAAGCCTGGTGACCGATACTGAGGGGCGTCA
TATCGCTATGCGAGAGGCGAGCCTACGCGCCCACGCTCAGGGGGGCAAGA
AGGACAACATGCCGGCCGGCTTTGAGCTTTTAGGGGTCCAAGATCAACAA
GAGCTCGCAAAGGAAATGGTGCAACAGTTCCTGAAGGGTCGGGATCAAGA
CCTCCGGCGGAAGGCCCTCGAACTTGAAGAACGGAAGATCTCGCTAAAAC
GCAAACACTGTGACACTGTTATCTACATGTACCGATCCTTAGAGGAGCTT
GATATCACGCTCGATTCGCGCGCTCAAGTTGACATCTTGGACACGATAGC
CCAAATCACCAAACCAGACATTAGCGAGGTGGTGTAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig115:104167..104853+

>mRNA_P-littoralis_Contig115.38.1 ID=mRNA_P-littoralis_Contig115.38.1|Name=mRNA_P-littoralis_Contig115.38.1|organism=Pylaiella littoralis U1_48|type=CDS|length=687bp|location=Sequence derived from alignment at P-littoralis_Contig115:104167..104853+ (Pylaiella littoralis U1_48)
ATGGCCACCGCAACGAGCCTCGACAATGCTACTATTCGCGTCGACCATGC
CTCCAAAAGGGCATCGCTGGTAGATGTCGCAAAGATGGTATTGGACTGTG
GCGAAGACGAAGCCAAAGCTGAGCTGAACAAGCTGCTCGGGCCAACCGCT
GACGCGGACGAAGACTGTCCGAGACTTCAAATCGACAACAGGGGAGGGTA
TACGCAAGTCGCGAACGTTGATTTTCTGATCGAAATCATCTGGTTGCTAC
CGGGCGCAATCCCGGACGACGTTCGCCGGAAGATGTGCCACGCGGTGTGC
CATTTATGCGAAGGGGATGCAAGCCTGGTGACCGATACTGAGGGGCGTCA
TATCGCTATGCGAGAGGCGAGCCTACGCGCCCACGCTCAGGGGGGCAAGA
AGGACAACATGCCGGCCGGCTTTGAGCTTTTAGGGGTCCAAGATCAACAA
GAGCTCGCAAAGGAAATGGTGCAACAGTTCCTGAAGGGTCGGGATCAAGA
CCTCCGGCGGAAGGCCCTCGAACTTGAAGAACGGAAGATCTCGCTAAAAC
GCAAACACTGTGACACTGTTATCTACATGTACCGATCCTTAGAGGAGCTT
GATATCACGCTCGATTCGCGCGCTCAAGTTGACATCTTGGACACGATAGC
CCAAATCACCAAACCAGACATTAGCGAGGTGGTGTAA
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