mRNA_P-littoralis_Contig1141.20.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig1141.20.1 vs. uniprot
Match: A0A6H5JW40_9PHAE (HTH La-type RNA-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW40_9PHAE) HSP 1 Score: 224 bits (571), Expect = 2.290e-63 Identity = 126/292 (43.15%), Postives = 157/292 (53.77%), Query Frame = 1
Query: 4 MLNETWSGACLVGQWISFDEQMVLCVGRTAKFMLRYMPKKPIKNGLKLWAVACFSGYCFASYTDGGFVGDPKLRKWADCPLGRTCRMVLFVLFGACPNLAEQLLQSGTYVAMDKLFSSPVLFNCLLWHGLFAVGTLKDIHRGASQAVRYWTTTKQTPRQKGDMAFARFGFLTFTQWKDSKLVRLLSTIHVNK---------------GD--FVPIPYSKFA-------------------PGKKKETLWQPLCRLAYNTFMGGVDLADQLNGYYLTLHKAYNYFWRRVFEQK 771
+LN W+ QW+ +DEQMV V A +++R+ PKKPI +G+KL+A+ GYCF S DGG GDPKLR W DCPLGRT R VL VL GAC +++ SG Y+AMD F SP LF CL H +FAVGT + G AV Y + + P ++G+M FAR G + F QW DSK + L S+IH+ + GD F P+PY F GK E L QP R Y MGGVD ADQ NG + HK+Y WRRV E K
Sbjct: 785 ILNNAWTENMDFNQWLCYDEQMVKTVSTFAHYLMRHSPKKPITHGMKLFAICDIEGYCFVSSVDGGMNGDPKLRVWFDCPLGRTTRHVLHVLLGACKKFGDKIDGSGAYIAMDNYFKSPTLFECLASHDIFAVGTCRSNRTGG--AVPYLQSLDRRPVERGEMHFARAGNVAFVQWLDSKEIILCSSIHIAQPHAAIGEPKKEDSDGGDDHFAPLPYRCFVCPLPSRPHPFMFSLRKAGQAGKSLE-LQQPWMRKDYVANMGGVDTADQQNGSHTHDHKSYTNHWRRVMEGK 1073
BLAST of mRNA_P-littoralis_Contig1141.20.1 vs. uniprot
Match: A0A6H5KQZ5_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQZ5_9PHAE) HSP 1 Score: 214 bits (545), Expect = 4.530e-63 Identity = 110/258 (42.64%), Postives = 143/258 (55.43%), Query Frame = 1
Query: 4 MLNETWSGACLVGQWISFDEQMVLCVGRTAKFMLRYMPKKPIKNGLKLWAVACFSGYCFASYTDGGFVGDPKLRKWADCPLGRTCRMVLFVLFGACPNLAEQLLQSGTYVAMDKLFSSPVLFNCLLWHGLFAVGTLKDIHRGASQAVRYWTTTKQTPRQKGDMAFARFGFLTFTQWKDSKLVRLLSTIHVNKGDFVPIPYSKFAPGKKKETLW--QPLCRLAYNTFMGGVDLADQLNGYYLTLHKAYNYFWRRVFEQK 771
+ N+ WS G W+S+DEQMV R ++RY KPIKNG+K WA+ C SGYCF DGGF GD KLR +A CPLGR+ R V++VL AC + +++ G VAMD F+ L CL +FAVGTL+ G A W ++G M AR L +W DS+ V L+ST HV ++ P+ Y K A E + QPL R Y MGGVD+ADQ G + H+ +FWRRVF+QK
Sbjct: 46 VFNKCWSELVEPGAWLSYDEQMVKSTARVMFALMRYNKAKPIKNGIKCWAICCPSGYCFVQSIDGGFSGDIKLRPYASCPLGRSARTVMYVLLEACETFSNKIIGKGITVAMDNFFTGAPLLRCLATRDIFAVGTLRGNRIGVELANYLWAKEGMAATERGQMLTARSDELVIVKWIDSQEVYLMSTKHVFADEWEPLAYEKRAANNNGEKVSSRQPLARKEYVKNMGGVDVADQRLGSHAHKHRPMTFFWRRVFDQK 303
BLAST of mRNA_P-littoralis_Contig1141.20.1 vs. uniprot
Match: A0A6H5KG44_9PHAE (DDE_Tnp_1_7 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG44_9PHAE) HSP 1 Score: 201 bits (511), Expect = 9.670e-61 Identity = 105/250 (42.00%), Postives = 138/250 (55.20%), Query Frame = 1
Query: 4 MLNETWSGACLVGQWISFDEQMVLCVGRTAKFMLRYMPKKPIKNGLKLWAVACFSGYCFASYTDGGFVGDPKLRKWADCPLGRTCRMVLFVLFGACPNLAEQLLQSGTYVAMDKLFSSPVLFNCLLWHGLFAVGTLKDIHRGASQAVRYWTTTKQTPRQKGDMAFARFGFLTFTQWKDSKLVRLLSTIHVNKGDFVPIPYSKFAPGKKKETL--WQPLCRLAYNTFMGGVDLADQLNGYYLTLHKAYNYF 747
+LNE WS G W+S+DEQMV R ++R+ KPIK G+K WA+ C SGYCF DGGF GD KLR A CPLGR+ R VL+VL ACP +++++ SG VAMD F+ L CL +FAVGTL+ G A W ++GDM AR L +W DS+ V L+ST HV + ++ P+ Y + A E + QPL R Y MGGVD+ADQ + H+ +F
Sbjct: 8 LLNECWSKLVEPGAWLSYDEQMVKSTARAMFALMRFNKTKPIKTGIKGWAICCPSGYCFVQSIDGGFSGDIKLRPHATCPLGRSARTVLYVLLEACPTFSDKIVGSGITVAMDNFFTGASLVRCLATRDIFAVGTLRGNRTGVDLAKHLWDKEGLKATERGDMLTARSDELVIVKWIDSQEVYLMSTKHVFEDEWAPLAYERRAANNNGEKVSSQQPLARKEYVKNMGGVDVADQRLSAHAHTHRPMTFF 257
BLAST of mRNA_P-littoralis_Contig1141.20.1 vs. uniprot
Match: A0A6H5KMF5_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMF5_9PHAE) HSP 1 Score: 208 bits (529), Expect = 2.070e-60 Identity = 115/267 (43.07%), Postives = 154/267 (57.68%), Query Frame = 1
Query: 4 MLNETWSGACLVGQWISFDEQMVLCVGRTAKFMLRYMPKKPIKNGLKLWAVACFSGYCFASYTDGGFVGDPKLRKWADCPLGRTCRMVLFVLFGACPNLAEQLLQSGTYVAMDKLFSSPVLFNCLLWHGLFAVGTLKDIHRGASQAVRYWTTTKQTPRQKGDMAFARFGFLTFTQWKDSKLVRLLSTIHVNK-----GD---FVPIPYS---KFAPGKKKETLWQPLCRLAYNTFMGGVDLADQLNGYYLTLHKAYNYFWRRVFEQK 771
+LN WS +GQW+ +DEQMV +K + + P KPI +G+KL+AV +GYC + DG F GDP LR DCPLG+T R VL VL C L +L+ SG ++AMD F+SP LF CL H +FAVGT + A+ Y + ++T GDM F R G + F QW+DSK + L ST+H+ + GD F P+P + K GK KE QP+ R+ Y +MGGVD ADQ N + H++Y WRRVF+ K
Sbjct: 91 ILNCAWSENVDLGQWLCYDEQMVKTASTFSKGLAHFNPAKPITHGMKLYAVCDRNGYCLINSIDGSFKGDPSLRSLEDCPLGKTTRHVLHVLLEECETLRGKLVGSGVFIAMDNYFTSPTLFACLASHEIFAVGTCRSPR--TCGALPYIQSLERTTPNPGDMTFCRSGEMAFVQWRDSKEILLCSTVHIGETGEEGGDINHFKPVPLALKGKGWAGKHKEHD-QPVMRMDYVKYMGGVDRADQQNESHYHDHRSYTNHWRRVFDAK 354
BLAST of mRNA_P-littoralis_Contig1141.20.1 vs. uniprot
Match: A0A6H5JJP9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJP9_9PHAE) HSP 1 Score: 206 bits (523), Expect = 6.410e-57 Identity = 117/292 (40.07%), Postives = 155/292 (53.08%), Query Frame = 1
Query: 4 MLNETWSGACLVGQWISFDEQMVLCVGRTAKFMLRYMPKKPIKNGLKLWAVACFSGYCFASYTDGGFVGDPKLRKWADCPLGRTCRMVLFVLFGACPNLAEQLLQSGTYVAMDKLFSSPVLFNCLLWHGLFAVGTLKDIHRGASQAVRYWTTTKQTPRQKGDMAFARFGFLTFTQWKDSKLVRLLSTIHVNK---------------GD--FVPIPYSKFA-------------------PGKKKETLWQPLCRLAYNTFMGGVDLADQLNGYYLTLHKAYNYFWRRVFEQK 771
+LN W+ +W+ +DEQM+ V A +++R PK+PI +G+KL+A+ GYCF S DGG GDPKLR W DCPLGRT R VL VL GAC +++ SG ++AM F+SP LF CL H +FAVGT + G AV Y + + P ++G+M FAR G + F QW DSK + L S+IH+ + GD F P+PY F GK E L QP R Y MGGV+ AD+ NG + H++Y WR V E K
Sbjct: 731 ILNNAWTENMDFNEWLCYDEQMMRTVSTFAHYLMRDNPKEPITHGMKLFAICDIEGYCFVSSVDGGMNGDPKLRVWFDCPLGRTTRHVLHVLLGACKKFGDKIDGSGVHIAMSNNFTSPTLFECLASHDIFAVGTCRSNRTGG--AVPYLQSLDRRPVERGEMHFARAGNVAFVQWLDSKEIILCSSIHIAQPHAAIGEPKKEDDDGGDDHFAPLPYRCFVCIPPSRPHPFMFSLRKAGQAGKSLE-LQQPWMRKDYVANMGGVNTADRQNGSHTHDHESYTNHWRGVMEGK 1019
BLAST of mRNA_P-littoralis_Contig1141.20.1 vs. uniprot
Match: A0A6H5KCK7_9PHAE (DDE_Tnp_1_7 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCK7_9PHAE) HSP 1 Score: 175 bits (443), Expect = 1.070e-48 Identity = 104/247 (42.11%), Postives = 128/247 (51.82%), Query Frame = 1
Query: 139 LKLWAVACFSGYCFASYTDGGFVGDPKLRKWADCPLGRTCRMVLFVLFGACPNLAEQLLQSGTYVAMDKLFSSPVLFNCLLWHGLFAVGTLKDIHRGASQAVRYWTTTKQTPRQKGDMAFARFGFLTFTQWKDSKLVRLLSTIHVNK---------------GD--FVPIPYSKFA-------------------PGKKKETLWQPLCRLAYNTFMGGVDLADQLNGYYLTLHKAYNYFWRRVFEQK 771
+KL+A+ YCF S DGG GDPKLR W DCPLGRT R VL VL GAC +++ SG Y+AMD F+SP LF CL H +FAVGT + G AV Y + + P ++G+M FAR G + F QW DSK + L S+IH+ + GD F P+PY F GK E L QP R Y MGGV+ ADQ N + HK+Y WRRV E K
Sbjct: 1 MKLFAICDIERYCFVSSVDGGMNGDPKLRVWFDCPLGRTTRHVLHVLLGACKKFGDKIDGSGVYIAMDNYFTSPTLFECLASHDIFAVGTCRSNRTGG--AVPYLQSLDRRPVERGEMHFARAGNVAFVQWLDSKEIILCSSIHIAQPHAAIGEPKKEDSDGGDDHFAPLPYRCFVCPLPSRPHPFMFSLRKAGQAGKSLE-LQQPWMRKDYVANMGGVETADQQNVSHTHDHKSYTNHWRRVIEGK 244
BLAST of mRNA_P-littoralis_Contig1141.20.1 vs. uniprot
Match: A0A6H5KPD8_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPD8_9PHAE) HSP 1 Score: 171 bits (433), Expect = 2.380e-48 Identity = 83/200 (41.50%), Postives = 112/200 (56.00%), Query Frame = 1
Query: 4 MLNETWSGACLVGQWISFDEQMVLCVGRTAKFMLRYMPKKPIKNGLKLWAVACFSGYCFASYTDGGFVGDPKLRKWADCPLGRTCRMVLFVLFGACPNLAEQLLQSGTYVAMDKLFSSPVLFNCLLWHGLFAVGTLKDIHRGASQAVRYWTTTKQTPRQKGDMAFARFGFLTFTQWKDSKLVRLLSTIHVNKGDFVPIPY 603
+LN+ WS G W+S+DEQMV R ++RY KPIK+G+K WA+ C SGY F DGGF GD KLR +A CPLGR+ R V++VL AC + +++ G VAMD F+ L CL +FAVGTL+ G A+ W ++G M AR L +W DS+ V L+ST HV ++ P+ Y
Sbjct: 112 VLNKCWSELVEPGAWLSYDEQMVKSTARVMLALMRYNKAKPIKHGIKCWAICCPSGYSFVQSIDGGFSGDIKLRPYASCPLGRSARTVMYVLLEACETFSNKIIGKGITVAMDNFFTGAPLLGCLATRDIFAVGTLRGNRIGVELAIYLWAKEGMAATERGQMLTARSDELVIVKWIDSQEVYLMSTKHVFADEWEPLAY 311
BLAST of mRNA_P-littoralis_Contig1141.20.1 vs. uniprot
Match: A0A6H5KGW0_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGW0_9PHAE) HSP 1 Score: 167 bits (423), Expect = 5.260e-47 Identity = 88/225 (39.11%), Postives = 122/225 (54.22%), Query Frame = 1
Query: 103 LRYMPKKPIKNGLKLWAVACFSGYCFASYTDGGFVGDPKLRKWADCPLGRTCRMVLFVLFGACPNLAEQLLQSGTYVAMDKLFSSPVLFNCLLWHGLFAVGTLKDIHRGASQAVRYWTTTKQTPRQKGDMAFARFGFLTFTQWKDSKLVRLLSTIHVNKGDFVPIPYSKFAPGKKKETL--WQPLCRLAYNTFMGGVDLADQLNGYYLTLHKAYNYFWRRVFEQK 771
+R+ KPIK G+K WA+ C SGYCF DGGF D K+R A C LGR+ R VL+VL ACP +++++ SG VAMD F+ + CL +FAVGT + G W ++GDM AR L +W DS+ V L+ST HV + ++ P+ Y + A + + QPL R Y +GGVD+ADQ + H+ +FW RV +QK
Sbjct: 1 MRFNKAKPIKTGIKGWAICCPSGYCFVQSIDGGF-SDIKVRPHATCRLGRSARTVLYVLLEACPTFSDKIVGSGITVAMDNFFTGASVLRCLATRDIFAVGTRRGNRTGVDLVKHLWDKEGLKATERGDMLTARSDELVIVKWIDSQEVYLMSTKHVFEDEWAPLAYERRAANNNGDKVPSHQPLARKEYVKNIGGVDVADQRLSAHAHTHRPMTFFWGRVLDQK 224
BLAST of mRNA_P-littoralis_Contig1141.20.1 vs. uniprot
Match: A0A6H5LEE0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LEE0_9PHAE) HSP 1 Score: 174 bits (441), Expect = 3.640e-46 Identity = 101/224 (45.09%), Postives = 126/224 (56.25%), Query Frame = 1
Query: 139 LKLWAVACFSGYCFASYTDGGFVGDPKLRKWADCPLGRTCRMVLFVLFGACPNLAEQLLQSGTYVAMDKLFSSPVLFNCLLWHGLFAVGTLKDIHRGASQAVRYWTTTKQTPRQKGDMAFARFGFLTFTQWKDSKLVRLLSTIHVN---KGD--------FVPIPYSKFAPGKKKETL--WQPLCRLAYNTFMGGVDLADQLNGYYLTLHKAYNYFWRRVFEQK 771
+KL A + YC S DGG GDPKLR + DCPLGRT R VL VL G C L +++ SG ++AMD F+SP LF CL H +FAVGT + + A Y + +T +GDM F R G + QW DSK + L+STIHV KG F P+P S A G+ E L QP R+ Y M GVDLADQ NG + HK+Y FWRRV++ K
Sbjct: 428 MKLLAACDITSYCLTSSVDGGMKGDPKLRPYMDCPLGRTTRHVLHVLLGECGVLRQKIDGSGVFIAMDNYFTSPTLFECLASHDIFAVGTCRADRTAGADA--YLESLGRTIPNRGDMNFCRSGQVACVQWADSKDIFLISTIHVAQPAKGKEEAGGIDHFKPLPLSLRAKGRNGEPLDLQQPYMRMDYVLNMLGVDLADQQNGSHTHDHKSYTNFWRRVYDAK 649
BLAST of mRNA_P-littoralis_Contig1141.20.1 vs. uniprot
Match: A0A6H5KJJ0_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJJ0_9PHAE) HSP 1 Score: 162 bits (411), Expect = 4.060e-43 Identity = 81/189 (42.86%), Postives = 110/189 (58.20%), Query Frame = 1
Query: 4 MLNETWSGACLVGQWISFDEQMVLCVGRTAKFMLRYMPKKPIKNGLKLWAVACFSGYCFASYTDGGFVGDPKLRKWADCPLGRTCRMVLFVLFGACPNLAEQLLQSGTYVAMDKLFSSPVLFNCLLWHGLFAVGTLKDIHRGASQAVRYWTTTKQTPRQKGDMAFARFGFLTFTQWKDSKLVRLLSTIH 570
+LN W+ W+S+DEQM+ V + + + Y P KPIK+G+KL A +GYC S DGG GDPKLR + DCPLGR R VL VL G C L +++ SG ++AMD F+SP +F CL + +FAVGT + + A Y + +T +GDM R G + QW DSK + L+STIH
Sbjct: 114 ILNTAWAANVECDNWLSYDEQMIKTVSKYSSKVSFYCPAKPIKHGMKLLAACDITGYCLTSSVDGGMKGDPKLRPYMDCPLGRATRHVLHVLLGECGVLRQKIDGSGVFIAMDNYFTSPTVFECLASYDIFAVGTCRADRTAGADA--YLESLGRTIPNRGDMNLCRSGQVACVQWADSKGIFLISTIH 300 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1141.20.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1141.20.1 >prot_P-littoralis_Contig1141.20.1 ID=prot_P-littoralis_Contig1141.20.1|Name=mRNA_P-littoralis_Contig1141.20.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=256bp MLNETWSGACLVGQWISFDEQMVLCVGRTAKFMLRYMPKKPIKNGLKLWAback to top mRNA from alignment at P-littoralis_Contig1141:62430..64517+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1141.20.1 ID=mRNA_P-littoralis_Contig1141.20.1|Name=mRNA_P-littoralis_Contig1141.20.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2088bp|location=Sequence derived from alignment at P-littoralis_Contig1141:62430..64517+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1141:62430..64517+ >mRNA_P-littoralis_Contig1141.20.1 ID=mRNA_P-littoralis_Contig1141.20.1|Name=mRNA_P-littoralis_Contig1141.20.1|organism=Pylaiella littoralis U1_48|type=CDS|length=768bp|location=Sequence derived from alignment at P-littoralis_Contig1141:62430..64517+ (Pylaiella littoralis U1_48)back to top |