mRNA_P-littoralis_Contig113.75.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig113.75.1
Unique NamemRNA_P-littoralis_Contig113.75.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig113.75.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig113contigP-littoralis_Contig113:346520..346893 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size374
Hectar predicted targeting categorysignal peptide
Exons1
Cds size327
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789457.3820913-UTR-P-littoralis_Contig113:346519..3465641680789457.3820913-UTR-P-littoralis_Contig113:346519..346564Pylaiella littoralis U1_48UTRP-littoralis_Contig113 346520..346564 -
1680789457.4007971-UTR-P-littoralis_Contig113:346891..3468931680789457.4007971-UTR-P-littoralis_Contig113:346891..346893Pylaiella littoralis U1_48UTRP-littoralis_Contig113 346892..346893 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789457.3914244-CDS-P-littoralis_Contig113:346564..3468911680789457.3914244-CDS-P-littoralis_Contig113:346564..346891Pylaiella littoralis U1_48CDSP-littoralis_Contig113 346565..346891 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig113.75.1prot_P-littoralis_Contig113.75.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig113 346565..346891 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig113.75.1

>prot_P-littoralis_Contig113.75.1 ID=prot_P-littoralis_Contig113.75.1|Name=mRNA_P-littoralis_Contig113.75.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=109bp
MLVVIVPLPCTKGVFIVFSSLVCSQVTKGGGHPPVPYVYPPMQTVVSVIV
CVSVVCFLDQNNHCSVSYQESLFHVILCAHIFLAQARSSISMIRRSSIES
NLPLVFII*
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mRNA from alignment at P-littoralis_Contig113:346520..346893-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig113.75.1 ID=mRNA_P-littoralis_Contig113.75.1|Name=mRNA_P-littoralis_Contig113.75.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=374bp|location=Sequence derived from alignment at P-littoralis_Contig113:346520..346893- (Pylaiella littoralis U1_48)
GCATGCTGGTGGTGATTGTGCCCCTGCCGTGCACAAAAGGTGTATTCATT
GTTTTTTCGTCTCTAGTCTGCAGTCAAGTCACCAAAGGCGGAGGACACCC
ACCGGTGCCCTATGTGTACCCTCCGATGCAAACAGTAGTAAGTGTGATCG
TGTGTGTGTCTGTGGTTTGTTTCCTTGACCAAAACAACCATTGTAGTGTT
TCGTACCAGGAATCACTGTTTCATGTCATTTTGTGTGCACACATTTTCCT
CGCGCAAGCAAGAAGTAGCATTTCCATGATACGACGGTCTTCTATAGAAT
CAAACTTACCGCTTGTATTTATCATTTGACATGTATTCTTCTTTGTGAAC
GCTGCTGAGGCCCGCAACATGTAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig113:346520..346893-

>mRNA_P-littoralis_Contig113.75.1 ID=mRNA_P-littoralis_Contig113.75.1|Name=mRNA_P-littoralis_Contig113.75.1|organism=Pylaiella littoralis U1_48|type=CDS|length=327bp|location=Sequence derived from alignment at P-littoralis_Contig113:346520..346893- (Pylaiella littoralis U1_48)
ATGCTGGTGGTGATTGTGCCCCTGCCGTGCACAAAAGGTGTATTCATTGT
TTTTTCGTCTCTAGTCTGCAGTCAAGTCACCAAAGGCGGAGGACACCCAC
CGGTGCCCTATGTGTACCCTCCGATGCAAACAGTAGTAAGTGTGATCGTG
TGTGTGTCTGTGGTTTGTTTCCTTGACCAAAACAACCATTGTAGTGTTTC
GTACCAGGAATCACTGTTTCATGTCATTTTGTGTGCACACATTTTCCTCG
CGCAAGCAAGAAGTAGCATTTCCATGATACGACGGTCTTCTATAGAATCA
AACTTACCGCTTGTATTTATCATTTGA
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