mRNA_P-littoralis_Contig1129.4.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1129.4.2
Unique NamemRNA_P-littoralis_Contig1129.4.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1129.4.2 vs. uniprot
Match: D7FV02_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV02_ECTSI)

HSP 1 Score: 115 bits (289), Expect = 4.890e-25
Identity = 105/347 (30.26%), Postives = 154/347 (44.38%), Query Frame = 2 
Query:    2 TKFTALKTDYTKGPQAHFDMGPRNEE*FESGKTSEDYLMALLKHMWTQSSEYKSAAAQDLTGDESGGDTIEINTGTFSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDATSPVGSKPVCDCKEECKLGDGIWECANPDADAACSFVDFVGSSSKENGGVHPSANAGAVAAVGLVAGGSAGAAAAGASKKLPEMPEGWFFQHLIMACAWSPWSGNTPSEWKGLCASSGKSQKVRGEDK------------LDLASNPLSSPEAMAAARKMLTGNGDSSSRRQTEAAVKLEAERVRRATKDKENLALMRESQVTRKKGVNAMEQVNETAVEMNKNLKRMADLREEAN 1006
            TKF ALKT+YTKG Q  FD  P +     SG  + D L  L   M+ ++++  +AA +D   D      I  NT   SA                                TSP+ + P  D                     +   +    + +       P+A+            GS   A  G  +   ++P+ +++ +L++AC WS WSGNTPSEWK L ASSG   +    DK            +    NP+ SP AM     ++  NGD+ SRRQ  A +K E E+V++  K+KEN+AL  E+  TRK+G+ AME  N    E++ N+K+M  L+EE+N
Sbjct:  134 TKFKALKTEYTKGAQLWFDTHPESSTELNSGTQTTDALDDLSADMYRKATK-GNAAKEDAAAD------IFFNTPRRSAEGVVVSGVT----------------------TTSPLPT-PAADAXXXXXXXXXXXXXXXXXXXTSPQALARRAAEALRREMASPTAS------------GSGSGANLGRPEGNEDIPDDYYYPYLLLACPWSSWSGNTPSEWKHLAASSGPRNRASKGDKGNSNGNDNSNEVVITDDNPIGSPRAMG----LMNANGDAVSRRQYFANIKKEKEQVKKDAKEKENVALRNEALDTRKRGLAAMESANTHVGELSSNIKKMVQLQEESN 434
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BLAST of mRNA_P-littoralis_Contig1129.4.2 vs. uniprot
Match: A0A6H5KGF1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGF1_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 1.680e-17
Identity = 56/121 (46.28%), Postives = 75/121 (61.98%), Query Frame = 2 
Query:  581 EMPEGWFFQHLIMACAWSPWSGNTPSEWKGLCASSGKSQKVRGEDKLDLASNPLSSPEAMAAARKMLTGNGDSSSRRQTEAAVKLEAERVRRATKDKENLALMRESQVTRKKGVNAMEQVN 943
            E+PE W F  L++  A+SPWSG  PSEWK L +S G S+K +G D    + NP+ SP  M+     L  NGD+ SRRQ  AA+K E E+ R+AT DKE     +E+  T+KKG+ A+E  N
Sbjct:  117 EVPEWWIFPFLLLTAAYSPWSGQAPSEWKHLDSSDGPSKKRKGGDVNVDSENPVCSPAVMS----RLDPNGDALSRRQHFAAIKREKEQERKATADKELQESRKETLETKKKGLAALEAAN 233
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BLAST of mRNA_P-littoralis_Contig1129.4.2 vs. uniprot
Match: A0A6H5KJW8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJW8_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 3.840e-16
Identity = 60/139 (43.17%), Postives = 78/139 (56.12%), Query Frame = 2 
Query:  581 EMPEGWFFQHLIMACAWSPWSGNTPSEWKGLCASSGKSQKVRGEDKLDLASNPLSSPEAMAAARKMLTGNGDSSSRRQTEAAVKLEAERVRRATKDKENLALMRESQVTRKKGVNAMEQVNETAVEMNKNLKRMADLRE 997
            E+PE W F  L++  A+SPWSG  PSEWK L +S G S+K  G D    + NP+ SP  M+     L  NGD+ SRRQ  AA+K E E  R+A  DKE L       +  KKG  A+E  N     +  N+KRM +L+E
Sbjct:  120 EVPEWWVFPFLLLTAAYSPWSGQAPSEWKHLDSSDGLSKKRTGGDVTVDSENPVYSPAVMS----RLNPNGDALSRRQHFAAIKREKEEERKAAADKE-LQXXXXXALETKKGPAALEAANTHVDSIGANMKRMVELKE 253
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BLAST of mRNA_P-littoralis_Contig1129.4.2 vs. uniprot
Match: A0A6H5JTM3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTM3_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 3.190e-15
Identity = 57/138 (41.30%), Postives = 80/138 (57.97%), Query Frame = 2 
Query:  584 MPEGWFFQHLIMACAWSPWSGNTPSEWKGLCASSGKSQKVRGEDKLDLASNPLSSPEAMAAARKMLTGNGDSSSRRQTEAAVKLEAERVRRATKDKENLALMRESQVTRKKGVNAMEQVNETAVEMNKNLKRMADLRE 997
            +PE W F  L++  A+SPWSG  PSEWK L +S G S+K +G D    + NP+ SP  M+     L  NGD+ SRRQ  AA+K E E+  +A  +KE L   R+  +  KKG+ A E  N     +  ++KRM +L+E
Sbjct:  137 VPEWWVFPFLLLTAAYSPWSGQAPSEWKHLDSSDGPSKKRKGADVTVDSENPVCSPAVMS----RLNPNGDALSRRQHFAAIKREKEQEMKAAAEKE-LQEARKEPLETKKGLAAFEAANTHVETIGADMKRMVELKE 269
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BLAST of mRNA_P-littoralis_Contig1129.4.2 vs. uniprot
Match: A0A6H5KDD8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDD8_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 2.730e-7
Identity = 29/57 (50.88%), Postives = 37/57 (64.91%), Query Frame = 2 
Query:  581 EMPEGWFFQHLIMACAWSPWSGNTPSEWKGLCASSGKSQKVRGEDKLDLASNPLSSP 751
            E+PE W F  L++  A+SPWSG  PSEWK L +S G S K +G D    + NP+SSP
Sbjct:  117 EVPEWWVFPFLLLTAAYSPWSGQAPSEWKHLDSSDGPSIKRKGGDVTVDSDNPVSSP 173
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BLAST of mRNA_P-littoralis_Contig1129.4.2 vs. uniprot
Match: A0A6H5KVE3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVE3_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 4.920e-7
Identity = 34/76 (44.74%), Postives = 43/76 (56.58%), Query Frame = 2 
Query:  581 EMPEGWFFQHLIMACAWSPWSGNTPSEWKGLCASSGKSQKVRGEDKLDLASNPLSSPEAMAAARKMLTGNGDSSSR 808
            E+ E W F  L+   A+SPWSG  PSEWK L +S G S K +G D    + NP+ SP  M+     L  NGD+ SR
Sbjct:   31 EVSEWWVFPFLLHTAAYSPWSGQAPSEWKHLDSSDGPSIKRKGGDVTVDSENPVCSPAVMS----RLNPNGDALSR 102
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BLAST of mRNA_P-littoralis_Contig1129.4.2 vs. uniprot
Match: A0A6H5K7S4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7S4_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 9.920e-7
Identity = 30/63 (47.62%), Postives = 39/63 (61.90%), Query Frame = 2 
Query:  581 EMPEGWFFQHLIMACAWSPWSGNTPSEWKGLCASSGKSQKVRGEDKLDLASNPLSSPEAMAAA 769
            E+PE W F  L++  A+SPWSG  PSEWK L +S G S+K +G D    + NP+ SP    AA
Sbjct:  105 EVPEWWVFPFLLLTAAYSPWSGQAPSEWKHLDSSDGPSKKRKGGDVTVDSENPVCSPAERKAA 167
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1129.4.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FV02_ECTSI4.890e-2530.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KGF1_9PHAE1.680e-1746.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJW8_9PHAE3.840e-1643.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTM3_9PHAE3.190e-1541.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDD8_9PHAE2.730e-750.88Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KVE3_9PHAE4.920e-744.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7S4_9PHAE9.920e-747.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1129contigP-littoralis_Contig1129:8557..11396 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1108
Hectar predicted targeting categoryother localisation
Exons3
Cds size993
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789456.2833228-CDS-P-littoralis_Contig1129:8556..92671680789456.2833228-CDS-P-littoralis_Contig1129:8556..9267Pylaiella littoralis U1_48CDSP-littoralis_Contig1129 8557..9267 -
1680789456.2937784-CDS-P-littoralis_Contig1129:9562..98441680789456.2937784-CDS-P-littoralis_Contig1129:9562..9844Pylaiella littoralis U1_48CDSP-littoralis_Contig1129 9563..9844 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789456.3018868-UTR-P-littoralis_Contig1129:9844..98991680789456.3018868-UTR-P-littoralis_Contig1129:9844..9899Pylaiella littoralis U1_48UTRP-littoralis_Contig1129 9845..9899 -
1680789456.3100488-UTR-P-littoralis_Contig1129:11336..113961680789456.3100488-UTR-P-littoralis_Contig1129:11336..11396Pylaiella littoralis U1_48UTRP-littoralis_Contig1129 11337..11396 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1129.4.2prot_P-littoralis_Contig1129.4.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1129 8557..9844 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1129.4.2

>prot_P-littoralis_Contig1129.4.2 ID=prot_P-littoralis_Contig1129.4.2|Name=mRNA_P-littoralis_Contig1129.4.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=331bp
MALLKHMWTQSSEYKSAAAQDLTGDESGGDTIEINTGTFSAAAAAAAAAA
ERGAGEVAPSVGRGTGTGTETDATSPVGSKPVCDCKEECKLGDGIWECAN
PDADAACSFVDFVGSSSKENGGVHPSANAGAVAAVGLVAGGSAGAAAAGA
SKKLPEMPEGWFFQHLIMACAWSPWSGNTPSEWKGLCASSGKSQKVRGED
KLDLASNPLSSPEAMAAARKMLTGNGDSSSRRQTEAAVKLEAERVRRATK
DKENLALMRESQVTRKKGVNAMEQVNETAVEMNKNLKRMADLREEANSFE
RLDPSSEAGPDDRISRKEVPPGPRPRHGAE*
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mRNA from alignment at P-littoralis_Contig1129:8557..11396-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1129.4.2 ID=mRNA_P-littoralis_Contig1129.4.2|Name=mRNA_P-littoralis_Contig1129.4.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=2840bp|location=Sequence derived from alignment at P-littoralis_Contig1129:8557..11396- (Pylaiella littoralis U1_48)
GACGAAATTCACGGCGCTCAAGACTGATTACACTAAAGGGCCGCAAGCGC
ACTTCGACATGTGAGAACGAGGCCTATTAGCGGATTTCGTGTATTCACTA
CTTGAAGACGGCTGTCAAGTGTGATGTGACATGAGTACGACTGTCGCTAC
TCTAGGCGGACATGGGTAGACTGTCGTCGTTATGCCACTCACAGAGCCAG
CAGCAGCAAGAAATGAAAAATAACACGCACACAGGTTCAACGGCAACAAG
CCCACACCATGTTGGGGCAGCATAGGTTTGCCATCCTAGGCTCGTTAGAG
TAGCAGAAGCATGCAGCAGCAAGCAGCAGCAGCCACCAGCGGCTGACGCT
ACAAAATAAACAGAGAGGCAGGGCAACATCCGAGCGCAGGTTGGAGCACA
GTGTGCGTCGGGGCGCATCCGCCCCTTAAGCTGCTCGCGTTAACCCTTTT
AGCCCCCTGGCTTAAATATATAAAAAAAAACTTGCTGACACTCCTCCTGC
TGTGCTGGCAAAAAATCCATGTGTCACCGACACATTTTCTAAAGCTACGT
CAAACCAATTTTGAGGGGTAAACCACACAAAATTTCTTTGGTAAGGACTA
CAGCAGGTTGCTTAAGTTTGTTTGCGCGAGGGATGACCCAGCTAGCAGAG
CCATCCACGTACTACGTACGCCGCCCACACAATCTCATAGCACGGCTATC
ACGCAAACACAAGGTTTACCCACCCGCGCACGACATACATGCGACACTAC
TACCACTGCTGCTGCTGTGCTTGCTGCTGCTGTAACTGCTACTTAACATG
CTGGGTTGTGGTGCCGTATCACACTGCTGTACAGCGGCAGTGCCAGTACA
GCAGTGCAAAGCAGCAGCATCACGTGTTAGTAGCATGTGTACAAGGAAGG
TGTGACAGGTGTATATGTATGTATTTGTGCTGCTGCTGCTGCTGCTGCTG
CTGGTGCAATCGTTAGATCGCCAACGCAAAACCAGAGTAAATAATTAAAA
TCGGGTGTCACCGTTTGGTCACCAAATTAAGGGTCTGGGGGTAAAAGGGT
TAAGTTACCGCAAGTTGTAACGGCAATACGCTTTTTCCGCGAGGGAGGAA
AGGGAAACGGCGAATGCCCCATATTTTTTCAGCGGGCGCAATAGAAAAAA
CACCGCTCCTACAAGCACGCGCAGCCGACAATTATGCAGTATCACATGGG
CTAGCACGCATGTATGGTAGCGACTGCTGTACCGCTGGATAGTTCCTTAT
AGATAAATAGGTCAGTCATGGGAGATGTGATGTACAGGTGAACAACTCAA
GGGGTCAAAGTCGTTTAGGTCCCAACACACGGGTAGCGCGAACCTCATCC
TACCCTCTGTGTATGTACTTGAAAATCCCGTTTGATGTTGTCCAAGCGAA
GGAAGTGGCGCTAACCATCCGCACCCTGCGCTAACCATCCGCACCCTGCG
CTAACCATCCGTACCCTGCCCTTGTACTCGTGGTCCTGTTGCCGCAGGGG
GCCACGAAATGAGGAATAATTCGAATCGGGGAAAACCAGCGAGGATTACC
TGATGGCGCTGCTCAAGCATATGTGGACCCAGTCCTCCGAGTACAAGTCG
GCGGCGGCCCAAGACCTGACCGGCGACGAGTCAGGTGGGGACACGATTGA
GATCAACACTGGAACTTTTTCGGCAGCAGCAGCGGCCGCCGCGGCCGCGG
CTGAGAGGGGGGCTGGGGAGGTGGCCCCGAGCGTTGGCCGTGGCACGGGC
ACAGGGACGGAAACGGATGCTACTTCGCCGGTGGGATCGAAGCCCGTGTG
TGACTGCAAGGAAGAGTGCAAACTTGGCGATGGGGTGCGTACGAAAATAT
GAATAGTACGGTAGTCGTTACGGCTCCCCTGTCGTCATTAGCCAGTAGTG
ATCGGTCGTGTTATCGTTCGTGTTGTGGTTCCAAATCCTTCGTAGAGTAG
TTGACAAATCTCTAGATTATAGTGGCAGCCTCCACATCTTTGATGAAAGC
CGTTGGGCTTATGGTATTTTTTACGCCGTTGTCTTCACGTGCAGACTGAA
TCTCAAAGTTACACAAAGAACGGCAACTGATGAGATCGCCTACACGTTCC
ACCCCTTCCTGCGATTCCCTATACCACAGATATGGGAGTGCGCGAACCCG
GACGCCGACGCAGCGTGCAGCTTCGTCGACTTCGTCGGATCGTCGAGCAA
AGAGAACGGCGGCGTTCATCCTAGCGCCAACGCTGGTGCTGTTGCGGCGG
TGGGGCTCGTCGCCGGTGGTAGTGCTGGGGCGGCGGCGGCTGGTGCTTCT
AAGAAGTTACCCGAGATGCCCGAGGGTTGGTTCTTCCAGCACCTCATCAT
GGCGTGTGCGTGGTCACCATGGAGCGGCAACACCCCTTCCGAGTGGAAAG
GCTTGTGTGCATCCAGCGGGAAATCCCAGAAGGTCAGAGGCGAGGACAAG
CTGGACTTGGCGTCAAACCCTCTCTCAAGCCCCGAGGCCATGGCTGCGGC
GCGCAAGATGCTCACCGGCAACGGCGACTCTTCGAGTCGTCGCCAGACCG
AAGCAGCGGTGAAATTGGAGGCTGAACGGGTTCGCAGGGCCACAAAGGAC
AAGGAAAACTTGGCACTCATGCGAGAGTCGCAGGTGACGAGGAAGAAGGG
TGTTAATGCCATGGAACAGGTCAATGAAACCGCGGTGGAGATGAACAAAA
ACTTGAAGCGGATGGCGGACCTCAGGGAAGAGGCGAATAGTTTCGAGAGG
TTAGATCCAAGCAGCGAAGCGGGCCCGGATGATCGAATCTCTCGAAAAGA
GGTGCCACCTGGCCCGCGGCCAAGACATGGCGCTGAATGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1129:8557..11396-

>mRNA_P-littoralis_Contig1129.4.2 ID=mRNA_P-littoralis_Contig1129.4.2|Name=mRNA_P-littoralis_Contig1129.4.2|organism=Pylaiella littoralis U1_48|type=CDS|length=993bp|location=Sequence derived from alignment at P-littoralis_Contig1129:8557..11396- (Pylaiella littoralis U1_48)
ATGGCGCTGCTCAAGCATATGTGGACCCAGTCCTCCGAGTACAAGTCGGC
GGCGGCCCAAGACCTGACCGGCGACGAGTCAGGTGGGGACACGATTGAGA
TCAACACTGGAACTTTTTCGGCAGCAGCAGCGGCCGCCGCGGCCGCGGCT
GAGAGGGGGGCTGGGGAGGTGGCCCCGAGCGTTGGCCGTGGCACGGGCAC
AGGGACGGAAACGGATGCTACTTCGCCGGTGGGATCGAAGCCCGTGTGTG
ACTGCAAGGAAGAGTGCAAACTTGGCGATGGGATATGGGAGTGCGCGAAC
CCGGACGCCGACGCAGCGTGCAGCTTCGTCGACTTCGTCGGATCGTCGAG
CAAAGAGAACGGCGGCGTTCATCCTAGCGCCAACGCTGGTGCTGTTGCGG
CGGTGGGGCTCGTCGCCGGTGGTAGTGCTGGGGCGGCGGCGGCTGGTGCT
TCTAAGAAGTTACCCGAGATGCCCGAGGGTTGGTTCTTCCAGCACCTCAT
CATGGCGTGTGCGTGGTCACCATGGAGCGGCAACACCCCTTCCGAGTGGA
AAGGCTTGTGTGCATCCAGCGGGAAATCCCAGAAGGTCAGAGGCGAGGAC
AAGCTGGACTTGGCGTCAAACCCTCTCTCAAGCCCCGAGGCCATGGCTGC
GGCGCGCAAGATGCTCACCGGCAACGGCGACTCTTCGAGTCGTCGCCAGA
CCGAAGCAGCGGTGAAATTGGAGGCTGAACGGGTTCGCAGGGCCACAAAG
GACAAGGAAAACTTGGCACTCATGCGAGAGTCGCAGGTGACGAGGAAGAA
GGGTGTTAATGCCATGGAACAGGTCAATGAAACCGCGGTGGAGATGAACA
AAAACTTGAAGCGGATGGCGGACCTCAGGGAAGAGGCGAATAGTTTCGAG
AGGTTAGATCCAAGCAGCGAAGCGGGCCCGGATGATCGAATCTCTCGAAA
AGAGGTGCCACCTGGCCCGCGGCCAAGACATGGCGCTGAATGA
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