mRNA_P-littoralis_Contig1123.24.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1123.24.1
Unique NamemRNA_P-littoralis_Contig1123.24.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1123.24.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1123contigP-littoralis_Contig1123:59546..60153 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size357
Hectar predicted targeting categoryother localisation
Exons2
Cds size357
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789454.0419824-CDS-P-littoralis_Contig1123:59545..598391680789454.0419824-CDS-P-littoralis_Contig1123:59545..59839Pylaiella littoralis U1_48CDSP-littoralis_Contig1123 59546..59839 +
1680789454.0532963-CDS-P-littoralis_Contig1123:60090..601531680789454.0532963-CDS-P-littoralis_Contig1123:60090..60153Pylaiella littoralis U1_48CDSP-littoralis_Contig1123 60091..60153 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1123.24.1prot_P-littoralis_Contig1123.24.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1123 59546..60153 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1123.24.1

>prot_P-littoralis_Contig1123.24.1 ID=prot_P-littoralis_Contig1123.24.1|Name=mRNA_P-littoralis_Contig1123.24.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=119bp
GRNGGNRDISRSSRCFRPDKGQQEWRVHGQEDRVVDEVAIALTGGCTRAS
SFDVVHIPEVEADTDCTGLCHFAAIMTKDKSTHPFPLAAAAPSLFPVHDV
DMEAADASELARYEERKK*
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mRNA from alignment at P-littoralis_Contig1123:59546..60153+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1123.24.1 ID=mRNA_P-littoralis_Contig1123.24.1|Name=mRNA_P-littoralis_Contig1123.24.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=608bp|location=Sequence derived from alignment at P-littoralis_Contig1123:59546..60153+ (Pylaiella littoralis U1_48)
GGTAGGAACGGGGGCAACCGCGATATCAGTCGCAGCTCTCGTTGTTTCCG
ACCCGATAAGGGACAGCAGGAGTGGCGCGTACATGGGCAAGAAGATCGTG
TTGTGGACGAGGTCGCTATCGCTTTGACGGGGGGTTGCACACGCGCGAGT
TCATTCGACGTCGTACACATCCCCGAAGTAGAGGCGGACACAGACTGCAC
GGGATTGTGTCACTTTGCCGCAATCATGACGAAGGACAAGAGCACCCATC
CGTTTCCACTCGCCGCGGCCGCGCCCTCATTGTTCCCGGTCCACGTGAGT
GTCGAATGGCGCTGGTTTTGGGGCTGGTTTTGTTGTCGTAGGTGGTTGCT
CCGTGATGTAGGAAAAGGATGGCGTCGACCCATTATGAAGTCGTTTTATT
TTGTGAATGTTATATTGTTTGGTGAGCACTAGCGATTATTTTTGTCCGCA
TAGCTTTTGAGTATTCAATGCACGAAGAAGGCCCAAATAAGCACGACAAG
GTAATCAGACCTTTCGTCGCCCCCCCTGACTTCCCATACGTGCAGGATGT
GGATATGGAGGCGGCGGACGCTTCCGAACTAGCTCGCTACGAGGAGAGGA
AAAAGTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1123:59546..60153+

>mRNA_P-littoralis_Contig1123.24.1 ID=mRNA_P-littoralis_Contig1123.24.1|Name=mRNA_P-littoralis_Contig1123.24.1|organism=Pylaiella littoralis U1_48|type=CDS|length=357bp|location=Sequence derived from alignment at P-littoralis_Contig1123:59546..60153+ (Pylaiella littoralis U1_48)
GGTAGGAACGGGGGCAACCGCGATATCAGTCGCAGCTCTCGTTGTTTCCG
ACCCGATAAGGGACAGCAGGAGTGGCGCGTACATGGGCAAGAAGATCGTG
TTGTGGACGAGGTCGCTATCGCTTTGACGGGGGGTTGCACACGCGCGAGT
TCATTCGACGTCGTACACATCCCCGAAGTAGAGGCGGACACAGACTGCAC
GGGATTGTGTCACTTTGCCGCAATCATGACGAAGGACAAGAGCACCCATC
CGTTTCCACTCGCCGCGGCCGCGCCCTCATTGTTCCCGGTCCACGATGTG
GATATGGAGGCGGCGGACGCTTCCGAACTAGCTCGCTACGAGGAGAGGAA
AAAGTGA
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