mRNA_P-littoralis_Contig112.129.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig112.129.2
Unique NamemRNA_P-littoralis_Contig112.129.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig112.129.2 vs. uniprot
Match: A0A6H5JM74_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM74_9PHAE)

HSP 1 Score: 192 bits (487), Expect = 2.650e-60
Identity = 90/94 (95.74%), Postives = 92/94 (97.87%), Query Frame = 3 
Query:   60 PSGSMKDVEGGASFAGK*SKELIGPLNPSGVEPTIYLTMSITSHKHAFSSIHEFTETTRRWERGADGELHQMRWIPDFNNWVLMLPPANAGALQ 341
            P GSMKDVEGGASFAGK SKELIGPLNPSGVEPTIYLTMSITSHKHAFSSIHEFTETTRRWERGADGELHQMRW+PDFN+WVLMLPPANAGALQ
Sbjct:   96 PGGSMKDVEGGASFAGKWSKELIGPLNPSGVEPTIYLTMSITSHKHAFSSIHEFTETTRRWERGADGELHQMRWMPDFNHWVLMLPPANAGALQ 189
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BLAST of mRNA_P-littoralis_Contig112.129.2 vs. uniprot
Match: A0A6H5JS69_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS69_9PHAE)

HSP 1 Score: 182 bits (463), Expect = 6.180e-55
Identity = 85/94 (90.43%), Postives = 88/94 (93.62%), Query Frame = 3 
Query:   60 PSGSMKDVEGGASFAGK*SKELIGPLNPSGVEPTIYLTMSITSHKHAFSSIHEFTETTRRWERGADGELHQMRWIPDFNNWVLMLPPANAGALQ 341
            P GSMKDVEGGASFAGK SKEL+ PLNPSGVE TIYLTMSITSHKHAF SIHEFTETTRRWERG DGELHQMRW+PDFN+WVLMLPPANAGALQ
Sbjct:  232 PGGSMKDVEGGASFAGKWSKELVSPLNPSGVESTIYLTMSITSHKHAFRSIHEFTETTRRWERGVDGELHQMRWMPDFNHWVLMLPPANAGALQ 325
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BLAST of mRNA_P-littoralis_Contig112.129.2 vs. uniprot
Match: A0A6H5JIG7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIG7_9PHAE)

HSP 1 Score: 142 bits (358), Expect = 3.680e-38
Identity = 72/94 (76.60%), Postives = 76/94 (80.85%), Query Frame = 3 
Query:   60 PSGSMKDVEGGASFAGK*SKELIGPLNPSGVEPTIYLTMSITSHKHAFSSIHEFTETTRRWERGADGELHQMRWIPDFNNWVLMLPPANAGALQ 341
            P GSMK VEGGASFAGK SKELIGPL P+GVEPTIYLTM ITSHK AFSSIHEFTETT        G L Q RW+P+FN+WVLMLPPANA ALQ
Sbjct:  226 PGGSMKHVEGGASFAGKWSKELIGPLKPAGVEPTIYLTMCITSHKQAFSSIHEFTETTV-------GGLRQTRWMPEFNHWVLMLPPANASALQ 312
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BLAST of mRNA_P-littoralis_Contig112.129.2 vs. uniprot
Match: A0A6H5KKT7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKT7_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 2.850e-21
Identity = 41/56 (73.21%), Postives = 46/56 (82.14%), Query Frame = 3 
Query:  174 MSITSHKHAFSSIHEFTETTRRWERGADGELHQMRWIPDFNNWVLMLPPANAGALQ 341
            M +TSH+  FSSI EFTETTRR ERG DGEL Q RW+P+FN+WVLMLPPANA  LQ
Sbjct:    1 MCVTSHEQEFSSIDEFTETTRRRERGLDGELRQKRWMPEFNHWVLMLPPANADVLQ 56
[Close]
BLAST of mRNA_P-littoralis_Contig112.129.2 vs. uniprot
Match: A0A6H5JHG9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHG9_9PHAE)

HSP 1 Score: 47.8 bits (112), Expect = 3.660e-5
Identity = 20/32 (62.50%), Postives = 24/32 (75.00%), Query Frame = -2 
Query:   68 MVGSTPEGLSGPINSLLHFPANDAPPSTSFID 163
            M+GS PEG  GPINSLLH P  + PPS +FI+
Sbjct:   17 MIGSAPEGFRGPINSLLHVPLKEVPPSPTFIE 48
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig112.129.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JM74_9PHAE2.650e-6095.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JS69_9PHAE6.180e-5590.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JIG7_9PHAE3.680e-3876.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KKT7_9PHAE2.850e-2173.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHG9_9PHAE3.660e-562.50Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig112contigP-littoralis_Contig112:508677..509300 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size341
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size168
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789452.0993633-CDS-P-littoralis_Contig112:508676..5088441680789452.0993633-CDS-P-littoralis_Contig112:508676..508844Pylaiella littoralis U1_48CDSP-littoralis_Contig112 508677..508844 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789452.113778-UTR-P-littoralis_Contig112:508844..5089541680789452.113778-UTR-P-littoralis_Contig112:508844..508954Pylaiella littoralis U1_48UTRP-littoralis_Contig112 508845..508954 -
1680789452.1227438-UTR-P-littoralis_Contig112:509237..5093001680789452.1227438-UTR-P-littoralis_Contig112:509237..509300Pylaiella littoralis U1_48UTRP-littoralis_Contig112 509238..509300 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig112.129.2prot_P-littoralis_Contig112.129.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig112 508677..508844 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig112.129.2

>prot_P-littoralis_Contig112.129.2 ID=prot_P-littoralis_Contig112.129.2|Name=mRNA_P-littoralis_Contig112.129.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=56bp
MSITSHKHAFSSIHEFTETTRRWERGADGELHQMRWIPDFNNWVLMLPPA
NAGALQ
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mRNA from alignment at P-littoralis_Contig112:508677..509300-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig112.129.2 ID=mRNA_P-littoralis_Contig112.129.2|Name=mRNA_P-littoralis_Contig112.129.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=624bp|location=Sequence derived from alignment at P-littoralis_Contig112:508677..509300- (Pylaiella littoralis U1_48)
CAACAGGCGGCCATACCGTGGACAGCACAAGCGTTTGGGGTGAAGATGCG
GTGCTTTCACCCAGTAAGTTGGTTTGTATTCAGGATGATTTCCCCGTAAG
ATAGAAGACGGCAAATTTGCAAAGCTAAATCGGTATGAGGGCTCCCGCTC
TCGTTAGGTCTCCACCTGTCATAATAAGCCCGGACAACCCCCTTCCACCA
CCCCCAGGATAGGATTATCTCTTGTGGTACAGGGACGCTTCGGATAAGTG
CTTGTGACCTTCATTTAGTATCCTTATATCCCAATAGCTTGTGCAAATGA
GGGCGATCCTTCGATAACGTTGCTCACACGTTATGTCACTGGGCAGGTGG
GTCGATGAAGGATGTTGAGGGTGGGGCGTCGTTCGCCGGGAAATGAAGCA
AGGAATTGATCGGTCCGCTCAACCCCTCTGGGGTTGAGCCAACCATCTAC
CTCACGATGTCCATCACGTCTCACAAGCACGCGTTCAGCAGCATCCACGA
GTTCACGGAGACAACTCGCCGCTGGGAACGCGGCGCCGATGGCGAACTCC
ACCAAATGCGATGGATACCTGATTTCAATAACTGGGTGCTCATGTTGCCC
CCGGCAAACGCAGGTGCCCTTCAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig112:508677..509300-

>mRNA_P-littoralis_Contig112.129.2 ID=mRNA_P-littoralis_Contig112.129.2|Name=mRNA_P-littoralis_Contig112.129.2|organism=Pylaiella littoralis U1_48|type=CDS|length=168bp|location=Sequence derived from alignment at P-littoralis_Contig112:508677..509300- (Pylaiella littoralis U1_48)
ATGTCCATCACGTCTCACAAGCACGCGTTCAGCAGCATCCACGAGTTCAC
GGAGACAACTCGCCGCTGGGAACGCGGCGCCGATGGCGAACTCCACCAAA
TGCGATGGATACCTGATTTCAATAACTGGGTGCTCATGTTGCCCCCGGCA
AACGCAGGTGCCCTTCAG
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