mRNA_P-littoralis_Contig1109.5.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1109.5.1
Unique NamemRNA_P-littoralis_Contig1109.5.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1109.5.1 vs. uniprot
Match: A0A6H5K5I6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5I6_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 1.310e-24
Identity = 59/105 (56.19%), Postives = 70/105 (66.67%), Query Frame = 1 
Query:    1 IGPRNLSQDLIEHRFSHYRGNNGTHRNPTAQEVKTRSQTGDVIRALNGKTRRNSNINANARVGQDF--HVADTSGEIMMAVTREETSRRIRAASRNTHKSVLCPR 309
            + PRN SQD+ EHRFSH R   GTHRNPTA+E K RS  GD+ RA NGK RRN++ N NAR G DF  H       I++AVT+ ET + +RA  RNT   VLCPR
Sbjct:  172 LSPRNCSQDICEHRFSHIRAALGTHRNPTAREAKKRSAVGDLCRATNGKRRRNASRNPNARSGGDFEEHGDSEKKAIILAVTKVETGKEVRAWCRNTPAEVLCPR 276
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1109.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K5I6_9PHAE1.310e-2456.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1109contigP-littoralis_Contig1109:68401..69348 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size734
Hectar predicted targeting categoryother localisation
Exons2
Cds size492
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789439.114132-UTR-P-littoralis_Contig1109:68400..686421680789439.114132-UTR-P-littoralis_Contig1109:68400..68642Pylaiella littoralis U1_48UTRP-littoralis_Contig1109 68401..68642 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789439.1273491-CDS-P-littoralis_Contig1109:68642..691101680789439.1273491-CDS-P-littoralis_Contig1109:68642..69110Pylaiella littoralis U1_48CDSP-littoralis_Contig1109 68643..69110 -
1680789439.1378334-CDS-P-littoralis_Contig1109:69324..693481680789439.1378334-CDS-P-littoralis_Contig1109:69324..69348Pylaiella littoralis U1_48CDSP-littoralis_Contig1109 69325..69348 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1109.5.1prot_P-littoralis_Contig1109.5.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1109 68643..69348 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1109.5.1

>prot_P-littoralis_Contig1109.5.1 ID=prot_P-littoralis_Contig1109.5.1|Name=mRNA_P-littoralis_Contig1109.5.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=164bp
IGPRNLSQDLIEHRFSHYRGNNGTHRNPTAQEVKTRSQTGDVIRALNGKT
RRNSNINANARVGQDFHVADTSGEIMMAVTREETSRRIRAASRNTHKSVL
CPRSASRPPSYASFRKRRPDHNPEMDHPNPYKYGFWRDGPKRGNGERRCS
CIMYPSSPQKLAR*
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mRNA from alignment at P-littoralis_Contig1109:68401..69348-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1109.5.1 ID=mRNA_P-littoralis_Contig1109.5.1|Name=mRNA_P-littoralis_Contig1109.5.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=948bp|location=Sequence derived from alignment at P-littoralis_Contig1109:68401..69348- (Pylaiella littoralis U1_48)
ATCGGACCACGAAACTTGAGCCAGGTTAGTGCCACTTTTGACATGTCGCG
CGCTCGATGCCTCCGCGGAAAATCGGCATAGAGGAAGTCCCTGTTCGTGT
CTGAATTAGGGAAGATACTTTTGATGCTACTGGCGTGGGATATGGCCACA
TTTTTATGCGGCATGACTCCGACCTCTCAGCCACCCAATGGATTGACAGC
CTTTTGCGCTGTCCGCCGTCGACGTCTTGCTGCAACAGGACTTGATCGAG
CACAGGTTTTCGCACTACCGCGGGAACAACGGGACGCACAGGAATCCGAC
GGCGCAGGAAGTCAAGACTCGGTCACAGACCGGGGACGTCATCAGGGCTT
TAAACGGGAAGACTCGTAGAAACTCCAACATAAACGCCAATGCGCGGGTC
GGCCAAGACTTCCACGTGGCCGACACCAGCGGCGAAATCATGATGGCGGT
CACAAGAGAGGAAACGAGTAGGCGGATTAGAGCTGCAAGTAGAAACACGC
ACAAGTCTGTCTTGTGCCCTAGGTCAGCCAGCCGGCCACCCTCTTATGCC
TCCTTCCGGAAGCGGAGACCAGACCACAACCCTGAGATGGACCACCCGAA
CCCCTACAAGTACGGGTTTTGGAGGGATGGCCCAAAAAGAGGAAATGGGG
AGCGCCGTTGTTCTTGCATTATGTACCCCTCGAGTCCGCAAAAACTTGCC
CGCTAAAGAGAGTTGTCTCATAGTGCCTGCCGCATTCTGTGAGCCTTTGG
ATGAAAATGTAGAGCTATTCCTCTTTCTGGTCGTCTTGAACAACTTACTT
TTGATGGTGAGGGGAGCGTTTTTTTGTTTCTTGTCCGGGATCAACCTTGC
TCCGTCATCTATGACGTTCGTGGCGGTCGTGTAGTCCGTGATTGTTCGTC
TTCAGTACTGGTACAACCAAAAGTAGGTCTTTGTGGCAAATCCGCGTA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1109:68401..69348-

>mRNA_P-littoralis_Contig1109.5.1 ID=mRNA_P-littoralis_Contig1109.5.1|Name=mRNA_P-littoralis_Contig1109.5.1|organism=Pylaiella littoralis U1_48|type=CDS|length=492bp|location=Sequence derived from alignment at P-littoralis_Contig1109:68401..69348- (Pylaiella littoralis U1_48)
ATCGGACCACGAAACTTGAGCCAGGACTTGATCGAGCACAGGTTTTCGCA
CTACCGCGGGAACAACGGGACGCACAGGAATCCGACGGCGCAGGAAGTCA
AGACTCGGTCACAGACCGGGGACGTCATCAGGGCTTTAAACGGGAAGACT
CGTAGAAACTCCAACATAAACGCCAATGCGCGGGTCGGCCAAGACTTCCA
CGTGGCCGACACCAGCGGCGAAATCATGATGGCGGTCACAAGAGAGGAAA
CGAGTAGGCGGATTAGAGCTGCAAGTAGAAACACGCACAAGTCTGTCTTG
TGCCCTAGGTCAGCCAGCCGGCCACCCTCTTATGCCTCCTTCCGGAAGCG
GAGACCAGACCACAACCCTGAGATGGACCACCCGAACCCCTACAAGTACG
GGTTTTGGAGGGATGGCCCAAAAAGAGGAAATGGGGAGCGCCGTTGTTCT
TGCATTATGTACCCCTCGAGTCCGCAAAAACTTGCCCGCTAA
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