mRNA_P-littoralis_Contig1108.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1108.4.1
Unique NamemRNA_P-littoralis_Contig1108.4.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1108.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1108contigP-littoralis_Contig1108:5523..5925 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size345
Hectar predicted targeting categoryother localisation
Exons2
Cds size294
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789438.868131-UTR-P-littoralis_Contig1108:5522..55731680789438.868131-UTR-P-littoralis_Contig1108:5522..5573Pylaiella littoralis U1_48UTRP-littoralis_Contig1108 5523..5573 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789438.8778396-CDS-P-littoralis_Contig1108:5573..56601680789438.8778396-CDS-P-littoralis_Contig1108:5573..5660Pylaiella littoralis U1_48CDSP-littoralis_Contig1108 5574..5660 -
1680789438.8907413-CDS-P-littoralis_Contig1108:5718..59251680789438.8907413-CDS-P-littoralis_Contig1108:5718..5925Pylaiella littoralis U1_48CDSP-littoralis_Contig1108 5719..5925 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1108.4.1prot_P-littoralis_Contig1108.4.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1108 5574..5925 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1108.4.1

>prot_P-littoralis_Contig1108.4.1 ID=prot_P-littoralis_Contig1108.4.1|Name=mRNA_P-littoralis_Contig1108.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=98bp
MAGPLAGLHRCISLVNNKGLESTFFPPSASDEAFGTKHDNRRPVSRRGIG
VGVVVEPWSGRWNDIFEYRWDGTSRSRDSGGFIAGTALREVGTAVGI*
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mRNA from alignment at P-littoralis_Contig1108:5523..5925-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1108.4.1 ID=mRNA_P-littoralis_Contig1108.4.1|Name=mRNA_P-littoralis_Contig1108.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=403bp|location=Sequence derived from alignment at P-littoralis_Contig1108:5523..5925- (Pylaiella littoralis U1_48)
ATGGCGGGGCCCCTGGCTGGGCTACACCGCTGTATCTCACTCGTTAATAA
TAAAGGTCTTGAGTCAACCTTCTTTCCTCCCTCGGCCTCTGACGAAGCTT
TTGGCACCAAACACGATAATCGTAGGCCTGTGTCGCGGCGGGGTATTGGC
GTTGGAGTTGTCGTGGAACCGTGGTCCGGGCGGTGGAACGATATTTTTGA
GTATAGACTATAGCTGGGACGGCACTTCGAGAGGTCGGGACAGCGGTGGG
TTTTGGATTTGGAGCTGGGACGGCACTTCGAGAAGTCGGGACAGCGGTGG
GTTTATAGCTGGGACAGCACTTCGAGAGGTCGGGACAGCGGTGGGTATAT
AGCTGGGACGGCACTTCGAGAGGCCGGGACAGCGGAGGTTTTACAGCTGG
GAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1108:5523..5925-

>mRNA_P-littoralis_Contig1108.4.1 ID=mRNA_P-littoralis_Contig1108.4.1|Name=mRNA_P-littoralis_Contig1108.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=294bp|location=Sequence derived from alignment at P-littoralis_Contig1108:5523..5925- (Pylaiella littoralis U1_48)
ATGGCGGGGCCCCTGGCTGGGCTACACCGCTGTATCTCACTCGTTAATAA
TAAAGGTCTTGAGTCAACCTTCTTTCCTCCCTCGGCCTCTGACGAAGCTT
TTGGCACCAAACACGATAATCGTAGGCCTGTGTCGCGGCGGGGTATTGGC
GTTGGAGTTGTCGTGGAACCGTGGTCCGGGCGGTGGAACGATATTTTTGA
GTATAGATGGGACGGCACTTCGAGAAGTCGGGACAGCGGTGGGTTTATAG
CTGGGACAGCACTTCGAGAGGTCGGGACAGCGGTGGGTATATAG
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