mRNA_P-littoralis_Contig1108.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1108.1.1
Unique NamemRNA_P-littoralis_Contig1108.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1108.1.1 vs. uniprot
Match: A0A6H5KHG3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHG3_9PHAE)

HSP 1 Score: 154 bits (389), Expect = 8.950e-43
Identity = 90/184 (48.91%), Postives = 116/184 (63.04%), Query Frame = 2
Query:  179 MTARPAGAASPDADDSEFFSDPEGE--EELEELLGQTPNIAELPPAVAELEEHACSDPATIRAKIATLSAKLAIGAGCNHATPLVTWKEEKAAASTCGLHQANIIAGIRMQDVLDRQTQRGEDVGFCLATRVRNQVYHEAAKDLGCYGAGNQCKAGKCMSAALGVFAGKGNAAVPTETVRALCK 724
            MTARP GAA    +D+  F DP     EELE LL  +P      P +A + +HA   P TIR  I   +A+LA  +GC H  PLVTWK+++ AA+TCG  QA +++    + VLDRQ     D G+CLA RVRNQVY++ + DL C+G GNQC AG CM AAL VFAG+    +P+E VRA+CK
Sbjct:    1 MTARPDGAAEEGGEDT-LFDDPVEVVGEELEGLLRLSPPSTSSTPVLAIITQHAIDSPETIRDFIEETAARLAKESGCQHEAPLVTWKQDREAATTCGRLQAGVLS----RKVLDRQMTHDGDPGYCLAKRVRNQVYYDTSIDLDCHGKGNQCSAGTCMKAALQVFAGEARDGIPSEIVRAMCK 179          
BLAST of mRNA_P-littoralis_Contig1108.1.1 vs. uniprot
Match: A0A6H5KG83_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG83_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 4.210e-29
Identity = 70/149 (46.98%), Postives = 98/149 (65.77%), Query Frame = 2
Query:  278 QTPNIAELPPAVAELEEHACSDPATIRAKIATLSAKLAIGAGCNHATPLVTWKEEKAAASTCGLHQAN--IIAGIRMQDVLDRQTQRGEDVGFCLATRVRNQVYHEAAKDLGCYGAGNQCKAGKCMSAALGVFAGKGNAAVPTETVRAL 718
            + P+++    AVA L+ HA   P TI + I   + +LA G  C+H  P V+W+E+ +  S CGLHQ+   ++A +R+QDV  R     +D G+C+A RVRNQ Y++ AKDLGC+G GNQ KAG+CM AA  VFAG GN  +PTE V+A+
Sbjct:   35 EPPSLSSEDTAVAILQ-HARLHPETIGSFIQKKAEELAEGV-CDHHQPPVSWQEDPSTTS-CGLHQSASAVLAAVRLQDVFTRYK---DDPGYCVAKRVRNQGYYDTAKDLGCFGRGNQLKAGECMCAATKVFAGDGNDGLPTEVVKAM 177          
BLAST of mRNA_P-littoralis_Contig1108.1.1 vs. uniprot
Match: D7G5X1_ECTSI (Ubiquitinyl hydrolase 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5X1_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 1.470e-19
Identity = 45/75 (60.00%), Postives = 53/75 (70.67%), Query Frame = 2
Query:  500 MQDVLDRQTQRGEDVGFCLATRVRNQVYHEAAKDLGCYGAGNQCKAGKCMSAALGVFAGKGNAAVPTETVRALCK 724
            +Q VLDR+  R  D G+CLA RVR+QVY+ A+ DL C G GNQC AG CM AA  V+AG G   VP ETVRA+CK
Sbjct:   63 VQKVLDREVSRDGDAGYCLAKRVRHQVYYGASADLLCKGMGNQCTAGACMRAAAQVYAGDGTDGVPAETVRAMCK 137          
BLAST of mRNA_P-littoralis_Contig1108.1.1 vs. uniprot
Match: A0A6H5KKJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKJ8_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 2.090e-19
Identity = 44/77 (57.14%), Postives = 56/77 (72.73%), Query Frame = 2
Query:  497 RMQDVLDRQTQRGEDVGFCLATRVRNQVYHEAAKDLGCYGAGNQCKAGKCMSAALGVFAGKGNAAVPTETVRALCKF 727
            R QDV  R     +D G+C+A RVRNQVY++ AKDLGC+G GNQ KAG+CM AA  VFAG GN  +PTE V+A+ ++
Sbjct:   16 RQQDVCTRYK---DDPGYCVAKRVRNQVYYDTAKDLGCFGRGNQLKAGECMRAATKVFAGDGNDGLPTEVVKAMLQY 89          
BLAST of mRNA_P-littoralis_Contig1108.1.1 vs. uniprot
Match: A0A6H5KBF5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBF5_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 5.880e-18
Identity = 43/72 (59.72%), Postives = 48/72 (66.67%), Query Frame = 2
Query:  509 VLDRQTQRGEDVGFCLATRVRNQVYHEAAKDLGCYGAGNQCKAGKCMSAALGVFAGKGNAAVPTETVRALCK 724
            VLDRQ  R  D G+CLA RVR QVY+EA+ DL C G  NQC AG CM AA  V+   G   VP ETVRA+CK
Sbjct:    3 VLDRQVSRDGDAGYCLANRVRYQVYYEASADLLCKGMDNQCTAGACMRAAAQVYVEDGTDGVPAETVRAMCK 74          
BLAST of mRNA_P-littoralis_Contig1108.1.1 vs. uniprot
Match: A0A6H5KC65_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC65_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 9.530e-18
Identity = 50/110 (45.45%), Postives = 71/110 (64.55%), Query Frame = 2
Query:  176 SMTARPAGAASPDADDSEFFSDPEGEEELEELLGQTPNIAELPPAVAELEEHACSDPATIRAKIATLSAKLAIGAGCNHATPLVTWKEEKAAASTCGLHQANIIAGIRMQ 505
            SMTAR  GAA P+ +    F DP   EE+E L+G  P++++    +A + +HA   P T+RA I   +  LAIGAGC H+ PLVTWK++ A+A TCG HQA++I  + +Q
Sbjct:   53 SMTARSRGAA-PEGEPDPIFDDPVVGEEIEGLMGDPPSVSD-DEELAAVRKHAIESPETVRAFIKERARSLAIGAGCPHSLPLVTWKDDPASAVTCGKHQAHLIGNVDLQ 160          
BLAST of mRNA_P-littoralis_Contig1108.1.1 vs. uniprot
Match: A0A6H5L174_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L174_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 1.000e-17
Identity = 50/110 (45.45%), Postives = 71/110 (64.55%), Query Frame = 2
Query:  176 SMTARPAGAASPDADDSEFFSDPEGEEELEELLGQTPNIAELPPAVAELEEHACSDPATIRAKIATLSAKLAIGAGCNHATPLVTWKEEKAAASTCGLHQANIIAGIRMQ 505
            SMTAR  GAA P+ +    F DP   EE+E L+G  P++++    +A + +HA   P T+RA I   +  LAIGAGC H+ PLVTWK++ A+A TCG HQA++I  + +Q
Sbjct:   57 SMTARSRGAA-PEGEPDPIFDDPVVGEEIEGLMGDPPSVSD-DEELAAVRKHAIESPETVRAFIKERARSLAIGAGCPHSLPLVTWKDDPASAVTCGKHQAHLIGNVDLQ 164          
BLAST of mRNA_P-littoralis_Contig1108.1.1 vs. uniprot
Match: A0A6H5JMB2_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMB2_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 1.250e-17
Identity = 41/70 (58.57%), Postives = 50/70 (71.43%), Query Frame = 2
Query:  518 RQTQRGEDVGFCLATRVRNQVYHEAAKDLGCYGAGNQCKAGKCMSAALGVFAGKGNAAVPTETVRALCKF 727
            RQ +   D G+CLA RVRNQVY++   DL   GAGNQC A +CM AAL VF+GKGN  +PTE VRA+C +
Sbjct:    9 RQLKLDGDPGYCLAKRVRNQVYYDTPTDLLAKGAGNQCTAAECMVAALKVFSGKGNKGIPTEIVRAMCMY 78          
BLAST of mRNA_P-littoralis_Contig1108.1.1 vs. uniprot
Match: A0A6H5KC02_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC02_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 4.460e-17
Identity = 48/110 (43.64%), Postives = 70/110 (63.64%), Query Frame = 2
Query:  176 SMTARPAGAASPDADDSEFFSDPEGEEELEELLGQTPNIAELPPAVAELEEHACSDPATIRAKIATLSAKLAIGAGCNHATPLVTWKEEKAAASTCGLHQANIIAGIRMQ 505
            SMTAR  GAA P+ +    F DP   EE+E L+G  P++++    +A + +HA   P T+RA I   +  +AIGAGC H+ PLVTWK++ A+A TCG HQA+++    +Q
Sbjct:   10 SMTARSRGAA-PEGEPDPIFDDPVVGEEIEGLMGDPPSVSD-DEELAAVRKHAIESPETVRAFIKERARSVAIGAGCPHSLPLVTWKDDPASAVTCGKHQAHLVGNADLQ 117          
BLAST of mRNA_P-littoralis_Contig1108.1.1 vs. uniprot
Match: A0A6H5KMD0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMD0_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 6.000e-12
Identity = 34/78 (43.59%), Postives = 52/78 (66.67%), Query Frame = 2
Query:  272 LGQTPNIAELPPAVAELEEHACSDPATIRAKIATLSAKLAIGAGCNHATPLVTWKEEKAAASTCGLHQANIIAGIRMQ 505
            +G  P++++    +A + +HA   P T+RA I   +  LAIGAGC H+ PLVTWK++ A+A TCG HQA++I  + +Q
Sbjct:    1 MGDPPSVSD-DEELAAVRKHAIESPETVRAFIKERARSLAIGAGCPHSLPLVTWKDDPASAVTCGKHQAHLIGNVDLQ 77          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1108.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5KHG3_9PHAE8.950e-4348.91Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KG83_9PHAE4.210e-2946.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5X1_ECTSI1.470e-1960.00Ubiquitinyl hydrolase 1 n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KKJ8_9PHAE2.090e-1957.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KBF5_9PHAE5.880e-1859.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KC65_9PHAE9.530e-1845.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L174_9PHAE1.000e-1745.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMB2_9PHAE1.250e-1758.57Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KC02_9PHAE4.460e-1743.64Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KMD0_9PHAE6.000e-1243.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1108contigP-littoralis_Contig1108:2020..3801 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size791
Hectar predicted targeting categoryother localisation
Exons2
Cds size552
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789438.9231942-UTR-P-littoralis_Contig1108:2019..20801680789438.9231942-UTR-P-littoralis_Contig1108:2019..2080Pylaiella littoralis U1_48UTRP-littoralis_Contig1108 2020..2080 -
1680789438.9603658-UTR-P-littoralis_Contig1108:3623..38011680789438.9603658-UTR-P-littoralis_Contig1108:3623..3801Pylaiella littoralis U1_48UTRP-littoralis_Contig1108 3624..3801 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789438.9362483-CDS-P-littoralis_Contig1108:2080..23051680789438.9362483-CDS-P-littoralis_Contig1108:2080..2305Pylaiella littoralis U1_48CDSP-littoralis_Contig1108 2081..2305 -
1680789438.9496548-CDS-P-littoralis_Contig1108:3296..36231680789438.9496548-CDS-P-littoralis_Contig1108:3296..3623Pylaiella littoralis U1_48CDSP-littoralis_Contig1108 3297..3623 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1108.1.1prot_P-littoralis_Contig1108.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1108 2081..3623 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1108.1.1

>prot_P-littoralis_Contig1108.1.1 ID=prot_P-littoralis_Contig1108.1.1|Name=mRNA_P-littoralis_Contig1108.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=184bp
MTARPAGAASPDADDSEFFSDPEGEEELEELLGQTPNIAELPPAVAELEE
HACSDPATIRAKIATLSAKLAIGAGCNHATPLVTWKEEKAAASTCGLHQA
NIIAGIRMQDVLDRQTQRGEDVGFCLATRVRNQVYHEAAKDLGCYGAGNQ
CKAGKCMSAALGVFAGKGNAAVPTETVRALCKF*
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mRNA from alignment at P-littoralis_Contig1108:2020..3801-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1108.1.1 ID=mRNA_P-littoralis_Contig1108.1.1|Name=mRNA_P-littoralis_Contig1108.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1782bp|location=Sequence derived from alignment at P-littoralis_Contig1108:2020..3801- (Pylaiella littoralis U1_48)
CAAGCGTCCCCGCACAGACATCGGCGGTTCTGTTGGGGGAGGTGACAAAT TGAAGGTGAAAGCCAGTAGTGTGCCAAATTCGCCTCAAAAAAATCAGCAG CAGCAGCAGCAGCAGCAGCAGCAAAAGCCCAAGGAGGACGAAGGTAACGG CACGGGCGCTGTCGCGGCAGGGCCTTCGATGACTGCCAGGCCCGCTGGGG CCGCCAGTCCTGATGCTGATGACTCCGAGTTCTTCAGCGACCCCGAAGGG GAGGAGGAGCTCGAGGAGTTGCTGGGGCAGACGCCAAACATCGCGGAGCT GCCTCCTGCCGTGGCGGAGCTTGAAGAGCATGCCTGTAGCGACCCGGCCA CGATCCGGGCTAAGATCGCGACACTGTCAGCGAAGCTGGCGATTGGGGCG GGATGCAACCACGCTACACCTCTTGTAACATGGAAGGAGGAGAAGGCCGC TGCGAGTACTTGTGGGCTTCACCAGGCTAACATCATAGCCGGGATACGCA TGCAGGTTGGTCAAGAAAAAAATAAAATTATGATCCCCGAACAACAGCAG CAGCAGAATTTTTTAGTAAACATACCGTTCAATGTATAGTGGCACATGAA CATGAGCATCACATGTCGTCTACACTGAGACTTCCTCGTAGTACATAAAC ATGTACTGATGTTTGCATGTATTTTTATATATCGATATATATGTGTGCTG TGTGTGCATTTATCTCTCTATATTTACAACAGTATGGTATTGTGGTATTC TTGTTGTATGCTCATTTATGTATGGATCTATGTATGTGTTGCTGTTTGTG CATTTATCACGTTGTGCCGGTATTTATCAATATGTTTACAGCAGTATGCA CATGGTGTTGTTGTGTGTTCATTTATGTATGGGTCTATGTATTTTTGTGT GTGTATTTATCACGTTGTCCATTTATGAATATGTTTACAGCACAGGTATG TATGTACTTCGTTTGCATGGCTATACTGCTGTATAGTCCTTGTATATGTA TATGTACGGTTCTACTGCTGTGTACATATTATACACGCAGTACACTTCGT GTACAATGTACTGCTGTATGTTTTGGCCGGACTTGAAAAAGCGGTGGCGG CAGTGGGAGTACTGCTATAGTACGGCGGTGTCCAAGGTTGCCTGTCGTTT GCACTATCATAGAGTAAAAACACATCAGCAAAAGAGCATAAACGTCGAAG TGATGTCTGCTTTGAGTGTATGTAGACAAACTACTCTAGTTGTATCCAAT TTATATATACCGACAACGAGAGGACATGCCGCCTGTACAGCGACCCCCCC CCCCCCCCATGTCGTCTCGTTGGTAAAGCAGTGCACAGTCGCCGTTAGGG TTACTTGTAGCCTCGCATCCAACTGAAAAAAGTAGTTTGTCCCATGGTGT CCGCGTACTACACACGTGCATCAGGGTTAGTTATCGTCCTCACAAGCGCA CAATTTTCCTATTCCACTGCCCTCCCACGCGCGATTCCTTGAACAGGATG TTCTCGACCGGCAGACGCAAAGGGGTGAAGATGTTGGGTTTTGCCTCGCG ACGCGTGTGCGCAATCAGGTCTATCACGAGGCCGCAAAGGATCTCGGGTG CTATGGAGCCGGCAACCAGTGCAAGGCTGGGAAGTGCATGAGCGCAGCTC TTGGCGTTTTCGCCGGCAAGGGCAATGCCGCCGTCCCGACCGAGACTGTT CGGGCGCTCTGCAAATTCTAGTTTTTTTAATCAAGTGCTCGGTCACATAT GTTTTAGTTCAAGAAATCGTAGGTGTCGTTAT
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Coding sequence (CDS) from alignment at P-littoralis_Contig1108:2020..3801-

>mRNA_P-littoralis_Contig1108.1.1 ID=mRNA_P-littoralis_Contig1108.1.1|Name=mRNA_P-littoralis_Contig1108.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=552bp|location=Sequence derived from alignment at P-littoralis_Contig1108:2020..3801- (Pylaiella littoralis U1_48)
ATGACTGCCAGGCCCGCTGGGGCCGCCAGTCCTGATGCTGATGACTCCGA
GTTCTTCAGCGACCCCGAAGGGGAGGAGGAGCTCGAGGAGTTGCTGGGGC
AGACGCCAAACATCGCGGAGCTGCCTCCTGCCGTGGCGGAGCTTGAAGAG
CATGCCTGTAGCGACCCGGCCACGATCCGGGCTAAGATCGCGACACTGTC
AGCGAAGCTGGCGATTGGGGCGGGATGCAACCACGCTACACCTCTTGTAA
CATGGAAGGAGGAGAAGGCCGCTGCGAGTACTTGTGGGCTTCACCAGGCT
AACATCATAGCCGGGATACGCATGCAGGATGTTCTCGACCGGCAGACGCA
AAGGGGTGAAGATGTTGGGTTTTGCCTCGCGACGCGTGTGCGCAATCAGG
TCTATCACGAGGCCGCAAAGGATCTCGGGTGCTATGGAGCCGGCAACCAG
TGCAAGGCTGGGAAGTGCATGAGCGCAGCTCTTGGCGTTTTCGCCGGCAA
GGGCAATGCCGCCGTCCCGACCGAGACTGTTCGGGCGCTCTGCAAATTCT
AG
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