mRNA_P-littoralis_Contig1104.5.2 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig1104.5.2 vs. uniprot
Match: A0A6H5L481_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L481_9PHAE) HSP 1 Score: 399 bits (1026), Expect = 9.020e-128 Identity = 248/457 (54.27%), Postives = 319/457 (69.80%), Query Frame = 1
Query: 19 LDNEDI-TQKQLLVHMQSVCIVYACLAVKRNAGILDKESKLAAAAKGYEEIAVPGFFRWARDNDIVLPAWLTVEKMGCSTLTGAPILFKDGAKLWSRFDTAMRVMKRDFNPIWDRYIKGQLGKNTLPSGQTGDDAIDNLLDGLHAQTPGTVDCPLGEDDLVEATSSGRVGGAGEEKIDGXXXXXXXXXKDTQQGGASGKEGRIDGVKQE-----SXXXXXXXXXXGSPEELGDSNDYPERPKNWMHQYLMIFCLIGRPSSSEDPDLATARKTSGPPGRERTPRKQTTRGGKRKAGXXXXXXXXXXXDIISYSS------GAGSNGNLDSTAIRTFAGAGEAQSRAQVKKESAAVAKNVASEAYRQKRLAQTSQLAQAVVSLSESVAAKRVLDEEAAVRAREVAARARKDQAIRDLQGRMALEEADSPLLLELRAALRLTYNKPVSAFMDATALPAAT 1353
L+N+ + T KQ ++ +Q+VCIVY+CLAVKRNAG++ E+K AAAA+GY EIAVPGFFRWARDNDI P+ LT++++G ++ GAP+L+ +G KLW++FD AM MK+ NPIWDRY+KGQ G N LPSGQTGDDAI+NLLDGL+++T G+ + P+ EDDLVE+T + G A EEK DG ++ G++G+ +K+E XXXX E+ GD +YP RP WMH L+I+C IGRPS SEDPDLATARKTSGPP RG KRK+ XXXXXXXXXXX S G GS+GNL STAIRTFAGAGE QSRAQV+K+ A V A+EA+RQKRLAQ Q+ +AV +L++SVAA+RVLDEEAAVRARE AA +RK + + +++G + E DS ELRAA++ Y++P+S FM+A PAAT
Sbjct: 27 LENKKLFTLKQQMLFIQNVCIVYSCLAVKRNAGVVGTEAKRAAAAQGYREIAVPGFFRWARDNDITFPSELTMKRIGATSTDGAPVLYTNGKKLWTKFDAAMLKMKKFCNPIWDRYVKGQPGGN-LPSGQTGDDAINNLLDGLYSKTKGSAESPVQEDDLVESTPAADGGKAPEEKADGGAPNEDKPDQE-------GEKGKTAVIKKERNPDDDDASVXXXXVPSEDEQAGDDGEYPPRPDGWMHPLLLIYCFIGRPSDSEDPDLATARKTSGPP----------KRGSKRKSXXXXXXXXXXXXXXXSTGESETEPGGVGSDGNLTSTAIRTFAGAGEPQSRAQVQKQQAEVKSKAANEAFRQKRLAQGDQITKAVKTLADSVAARRVLDEEAAVRARETAAESRKQRKVNNMRGLLEFSEVDSAQYYELRAAIKAVYHQPLSDFMEAIP-PAAT 464
BLAST of mRNA_P-littoralis_Contig1104.5.2 vs. uniprot
Match: A0A6H5JGS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGS6_9PHAE) HSP 1 Score: 167 bits (422), Expect = 5.420e-42 Identity = 137/396 (34.60%), Postives = 188/396 (47.47%), Query Frame = 1
Query: 10 LVLLDNEDITQKQLLVHMQSVCIVYACLAVKRNAGILDKESKLAAAAKGYEEIAVPGFFRWARDNDIVLPAWLTVEKMGCSTLTGAPILFKDGAKLWSRFDTAMRVMKRDFNPIWDRYIKGQLGKNTLPSGQTGDDAIDNLLDGLHAQTPGTVDCPL----GEDDLVEATSSGRVGGAGEEKIDGXXXXXXXXXKDTQQGGASGKEGRIDGVKQESXXXXXXXXXXGSPEELGD-SNDYPERPKNWMHQYLMIFCLIGRPSSSEDPDLATARKTSGPPGRERTPRKQTTRGGKRKAGXXXXXXXXXXXDIISYSSGAGSNGNLDSTAIRTFAGAGEAQSRAQVKKESAAVAKNVASEAYRQKRLAQTSQLAQAVVSLSESVAAKRVLDEEAAVRAR 1182
L+L +++ +LL H+QSVCIVYACLAVKRNAGI+ E+K AAAKGY++IAVPGF++W R + A D + D G P G+ +D +D LL+G++ + G + P+ G+DDL + GG EE + G E + G+K+E E++ + +YP+R WMH YL+ +CLIGR SSSEDP+L TARKT G R +SGA + +L S+AIR FAGAG+ QSRAQVKKE AAVA A E R+ + A T + AV +LS +V +++ LDE+AA RAR
Sbjct: 26 LLLGGGNGLSKIKLLKHLQSVCIVYACLAVKRNAGIVSMEAKHKAAAKGYKDIAVPGFYKWLRILQV-----------------------------------AQGQRHNDLAGVADVRAPG------TPXGEQEEDVLDYLLNGVYHLSSGNAEDPIELEDGDDDLED-------GGEPEE--------------------SEGDEPGVGGIKEEPAVGNQGDGDGAPSEDIEEVDGEYPDRGNKWMHPYLLTYCLIGRASSSEDPELRTARKTDGSGSR---------------------------------TSGAHTEVDLSSSAIRMFAGAGKIQSRAQVKKEYAAVAAANAQEQVRRVQQAHTGKQVTAVEALSAAVVSRQALDEDAAHRAR 320
BLAST of mRNA_P-littoralis_Contig1104.5.2 vs. uniprot
Match: D7FSK1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSK1_ECTSI) HSP 1 Score: 161 bits (407), Expect = 2.420e-40 Identity = 121/314 (38.54%), Postives = 174/314 (55.41%), Query Frame = 1
Query: 319 MRVMKRDFNPIWDRYIKGQLGKNTLPSGQTGDDAIDNLLDGLHAQTPGTVDCPLGEDDLVE-ATSSGRVGGAGEEKIDGXXXXXXXXXKDTQQGGASGKEG---RIDGVKQESXXXXXXXXXXGSPEELGDSND-YPERPKNWMHQYLMIFCLIGRPSSSEDPDLATARKTSGPPGRERTPRKQTTRGGKRKAGXXXXXXXXXXXDIISYSSGAGSNGNLDSTAIRTFAGAGEAQSRAQVKKESAAVAKNVASEAYRQKRLAQTSQLAQAVVSLSESVAAKRVLDEEAAVRAREVAARARKDQAIRDLQGRMAL 1245
MR MK+ +N +WD ++GQ G+N LPSG+ DA+D LL+G++ + G + P+ +D+ + + GGA + +G + GGA EG + G+K+E + + +++ YP+RP WMH YL+ +CLIGRPSSSEDPDL T RKTSGP GR GGK+K+ + S +SGA ++ +L S AIR FAGAGE++SRAQVKKE AVA A E R+ + T +L AV + S +V +++ LDEEAA R+ AR K I DL+G + +
Sbjct: 1 MREMKKTYNKVWDSLVEGQPGEN-LPSGEQEGDALDYLLNGVYHLSTGNAEDPIELEDIDDDLDNDADDGGAAGLQDNGRNDGESPPGQVEDGGGAEESEGGAPAVGGIKEEPAVGNQGSGDGAPSDNIEEADGGYPDRPDKWMHPYLLTYCLIGRPSSSEDPDLRTTRKTSGPKGR----------GGKQKS---KRGSPGTSDESGSETSGAYTDVDLSSNAIRMFAGAGESRSRAQVKKEHEAVAAANAQEQARRVQQTHTGKLVTAVEAWSAAVVSRQALDEEAAHRSHWDYARLAKKAKIDDLRGEVGV 300
BLAST of mRNA_P-littoralis_Contig1104.5.2 vs. uniprot
Match: A0A6H5JUY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUY9_9PHAE) HSP 1 Score: 153 bits (387), Expect = 3.330e-39 Identity = 71/119 (59.66%), Postives = 93/119 (78.15%), Query Frame = 1
Query: 13 VLLDNEDITQKQLLVHMQSVCIVYACLAVKRNAGILDKESKLAAAAKGYEEIAVPGFFRWARDNDIVLP-AWLTVEKMGCSTLTGAPILFKDGAKLWSRFDTAMRVMKRDFNPIWDRYI 366
+LL + ++Q +LL H+Q+VCIVYACLAVKRNAGI+ E+K AAAKGY++IAVPGFF+W ++N IV+ AWLT E MG ++L GAP+LF DG KLW RFD MR MK+ +N +WDR +
Sbjct: 26 LLLGGKGLSQIKLLKHLQNVCIVYACLAVKRNAGIVSTEAKYKAAAKGYKDIAVPGFFKWLKENGIVIKQAWLTFEVMGRTSLNGAPVLFTDGKKLWKRFDKVMREMKKTYNKVWDRCV 144
BLAST of mRNA_P-littoralis_Contig1104.5.2 vs. uniprot
Match: D7FPI6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPI6_ECTSI) HSP 1 Score: 152 bits (384), Expect = 2.770e-38 Identity = 72/145 (49.66%), Postives = 103/145 (71.03%), Query Frame = 1
Query: 25 NEDITQKQLLVHMQSVCIVYACLAVKRNAGILDKESKLAAAAKGYEEIAVPGFFRWARDN----DIVLPAWLTVEKMGCSTLTGAPILFKDGAKLWSRFDTAMRVMKRDFNPIWDRYIKGQLGKNTLPSGQTGDDAIDNLLDGLH 447
+ +T +LL H+Q+VCIVYACL VKRNAGI+ ++K AAAAKGY++IAV GFF+W ++N WLT E MG ++++G +LF G KLW RFD MR +K+ +NP+WD +++GQ G + LPSG +DAI+ LL+G++
Sbjct: 32 SSGLTDAKLLKHLQNVCIVYACLTVKRNAGIVSTQAKHAAAAKGYKDIAVLGFFKWLKENLEADQYFSQPWLTFEVMGRTSMSGDAVLFTHGKKLWKRFDNIMRALKKFYNPVWDSFVEGQPG-DQLPSGSQDEDAIEYLLNGVY 175
BLAST of mRNA_P-littoralis_Contig1104.5.2 vs. uniprot
Match: A0A6H5KBX2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBX2_9PHAE) HSP 1 Score: 148 bits (373), Expect = 4.590e-36 Identity = 127/330 (38.48%), Postives = 157/330 (47.58%), Query Frame = 1
Query: 43 KQLLVHMQSVCIVYACLAVKRNAGILDKESKLAAAAKGYEEIAVPGFFRWARDN----DIVLPAWLTVEKMGCSTLTGAPILFKDGAKLWSRFDTAMRVMKRDFNPIWDRYIKGQLGKNTLPSGQTGDDAIDNLLDGLHAQTPGTVDCPLGEDDLVEATSSGRVGGAGEEKIDGXXXXXXXXXKDTQQGGASGKEGRIDGVKQESXXXXXXXXXXGSPEELGDSNDYPERPKNWMHQYLMIFCLIGRPSSSEDPDLATARKTSGPPGRERTPRKQTTRGGKRKAGXXXXXXXXXXXDIISYSSGAGSNGNLDSTAIRTFAGAGEAQSRAQ 1020
+Q+L H+Q+VCIVYACLAVKRNAGI+ ++K AAAA+GY++IAVPGFF+W ++N D L WLT E LG N + +T AI+ LLD ++ GT D +D +E G GG GE DG XX XXXXX S E + +P+RPK WMHQYL+ FCLIGRP SSEDPDL TARKTSG GR GK+KA + S +SGA + +L S AIR F GAGE QS+AQ
Sbjct: 15 RQVLKHLQNVCIVYACLAVKRNAGIVSTQAKHAAAAQGYKDIAVPGFFKWLQENLDKEDFFLQPWLTFED--------------------------------------------NLGTNYRRAAKTN--AIEYLLDEVYRMESGTGDA----EDPIELEERG--GGEGEGSEDGSGESSPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDDAP-SEEITREEGGFPQRPKKWMHQYLLTFCLIGRPCSSEDPDLRTARKTSGAKGRGAXXXXXXX--GKQKA---KKGSPGTSDESGSEASGAYTEVDLSSNAIRMFTGAGEIQSQAQ 286
BLAST of mRNA_P-littoralis_Contig1104.5.2 vs. uniprot
Match: A0A6H5JM89_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM89_9PHAE) HSP 1 Score: 148 bits (374), Expect = 1.070e-33 Identity = 126/404 (31.19%), Postives = 172/404 (42.57%), Query Frame = 1
Query: 25 NEDITQKQLLVHMQSVCIVYACLAVKRNAGILDKESKLAAAAKGYEEIAVPGFFRW-ARDNDIVLPAWLTVEKMG---------------------------CSTLTGAPILFKDGAKLWSRFDTAMRVMKRDFNPIWDRYIKGQLGKNTLPSGQTGDDAIDNLLDGLHA----QTPGTVDCPLGEDDLVEATSSGRVGGA----------------------GEEKIDGXXXXXXXXXKDTQQGGASGKEGRIDGVKQESXXXXXXXXXXGSPEELGDSND----------YPERPKNWMHQYLMIFCLIGRPSSSEDPDLATARKTSGPPGRERTPRKQTTRGGKRKAGXXXXXXXXXXXDIISYSSGAGSNG-------NLDSTAIRTFAGAGEAQSRAQV 1023
+ +T K+++ +Q+V + Y + VKRNAG +D + + A K Y++ VPGF +W + + D P WLT+E MG +L P L+KDG K+W+R+ A R +++D NP++D+ I Q G T PSG+ D +D LL L + TV+ E + + A G G EK G G A+G EG IDG P+ G+ +D YPERP NWM Y + FC GRPS+SED DLA + SGP G R PRK K+KA S G+GS G NL ++ F GAGEAQSRAQV
Sbjct: 27 GDGLTMKEVVRQLQTVALCYTAMGVKRNAGEIDSKKREALLLKAYKDDVVPGFLKWLSEEGDCTTPPWLTMEMMGRVAVHTCRHQWHRNAGAEEQGERETAATESLYEEPKLYKDGKKIWARYLDAFRDIRKDANPVYDKTIGDQPG-GTPPSGEQYADQLDELLQALWEYQCREKNKTVEVTAEEKEFLRARGPSAAKGXXXXXXXXXXXXXLSSTDGEVVQGTEKEGGGADAGKDEEVAAGAGRAAGSEG-IDGSGDGGAGREGQPMEQEQPKTPGEEDDGGSEPESVVQYPERPPNWMPYYFLTFCFFGRPSNSEDTDLAM-KAGSGPSGDSR-PRK------KKKASLGS-----------SSDGGSGSEGGASDPAANLGRAGVKQFVGAGEAQSRAQV 409
BLAST of mRNA_P-littoralis_Contig1104.5.2 vs. uniprot
Match: A0A6H5JUN8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUN8_9PHAE) HSP 1 Score: 131 bits (330), Expect = 5.140e-31 Identity = 89/229 (38.86%), Postives = 121/229 (52.84%), Query Frame = 1
Query: 241 MGCSTLTGAPILFKDGAKLWSRFDTAMRVMKRDFNPIWDRYIKGQLGKNTLPSGQTGDDAIDNLLDGLHAQTPGTVDCPLGEDDLVEATSSGRVGGAGEEKIDGXXXXXXXXXKDTQQGGASGKEGRID--------------GVKQESXXXXXXXXXXGSPEELG-DSNDYPERPKNWMHQYLMIFCLIGRPSSSEDPDLATARKTSGPPGRERTPRKQTTRGGKRKA 882
MG +++TG +LF DG KLW RF +R +K+ +NP+ +++GQ G + LPSG GDDAI+ LLDG++ GT + +D +E G GG GE D +D + G G E ++ G+K+E EE+ + +P+RP WMHQYL+ CLIGRP SSEDPDL TARK SGP R + K RGGK+KA
Sbjct: 1 MGKTSMTGGAVLFTDGEKLWKRFYKTLREIKKYYNPV---FVEGQPG-DQLPSGSQGDDAIEYLLDGVYHMESGTGNA----EDPIELEERG--GGEGEGWEDDSGESSPTESEDGESGKQKGTEEAVEPQESSGDDSPAGEGGMKKEPEDDTPGNGDDAPSEEITREEGGFPQRPNKWMHQYLLTLCLIGRPCSSEDPDLRTARKISGPKVRGASGAKG--RGGKQKA 217
BLAST of mRNA_P-littoralis_Contig1104.5.2 vs. uniprot
Match: A0A6H5JU95_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU95_9PHAE) HSP 1 Score: 119 bits (299), Expect = 2.770e-27 Identity = 97/202 (48.02%), Postives = 119/202 (58.91%), Query Frame = 1
Query: 733 MHQYLMIFCLIGRPSSSEDPDLATARKTSGPPGRERTPRKQTTRGGKRKAGXXXXXXXXXXXDIISYSSGAGSNGNLDSTAIRTFAGAGEAQSRAQVKKESAAVAKNVASEAYRQKRLAQTSQLAQAVVSLSESVAAKRVLDEEAAVRAREVAARARKDQAIRDLQGRMALEEADSPLLLELRAALRLTYNKPVSAFMDATA 1338
MH YL+ +CLIGRPSSSEDPDL TARKTSGP GR GGK+KA S +SGA ++ +L S+AIR FAGAGE QSRAQVKKE AAVA A E R+ + A T L AV +LS +V +++ LDEEAA RAR AR K I DL+G++ + P + LRA++ VS ATA
Sbjct: 1 MHPYLLTYCLIGRPSSSEDPDLRTARKTSGPKGR----------GGKQKAKKGSPSTSDGSG---SETSGAYTDVDLSSSAIRMFAGAGEVQSRAQVKKEHAAVAAANAQEQARRVQQAHTVFLVTAVGALSAAVVSRQALDEEAAHRARWDYARLAKKAKIDDLRGKLEFT-LEGPTAMALRASIAALX---VSVICSATA 185
BLAST of mRNA_P-littoralis_Contig1104.5.2 vs. uniprot
Match: A0A6H5KXV2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXV2_9PHAE) HSP 1 Score: 120 bits (302), Expect = 1.010e-26 Identity = 86/164 (52.44%), Postives = 100/164 (60.98%), Query Frame = 1
Query: 700 SNDYPERPKNWMHQYLMIFCLIGRPSSSEDPDLATARKTSGPPGRERTPRKQTTRGGKRKAGXXXXXXXXXXXDIISYSSGAGSNGNLDSTAIRTFAGAGEAQSRAQVKKESAAVAKNVASEAYRQKRLAQ---TSQLAQAVVSLSESVAAKRVLDEEAAVRAR 1182
S YP+RP WMH YL+ CL+GRPSSSEDPDL TARKTSGP GR GGK+KA S +SGA + +L S+AIR FAG GE QSRAQVKKE AAVA A E Q R Q T +L AV +LS +V +++ LDEEAA RAR
Sbjct: 116 SGGYPDRPNKWMHPYLLTCCLVGRPSSSEDPDLRTARKTSGPKGR----------GGKQKAKKGSPSTSDGSG---SETSGAYTEVDLSSSAIRMFAGGGEIQSRAQVKKEHAAVAAANAQEQAEQARRVQQAHTGKLVTAVEALSAAVVSRQALDEEAAHRAR 266 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1104.5.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1104.5.2 >prot_P-littoralis_Contig1104.5.2 ID=prot_P-littoralis_Contig1104.5.2|Name=mRNA_P-littoralis_Contig1104.5.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=501bp MQSVCIVYACLAVKRNAGILDKESKLAAAAKGYEEIAVPGFFRWARDNDIback to top mRNA from alignment at P-littoralis_Contig1104:11139..14986- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1104.5.2 ID=mRNA_P-littoralis_Contig1104.5.2|Name=mRNA_P-littoralis_Contig1104.5.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=3848bp|location=Sequence derived from alignment at P-littoralis_Contig1104:11139..14986- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1104:11139..14986- >mRNA_P-littoralis_Contig1104.5.2 ID=mRNA_P-littoralis_Contig1104.5.2|Name=mRNA_P-littoralis_Contig1104.5.2|organism=Pylaiella littoralis U1_48|type=CDS|length=1503bp|location=Sequence derived from alignment at P-littoralis_Contig1104:11139..14986- (Pylaiella littoralis U1_48)back to top |