mRNA_P-littoralis_Contig110.55.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig110.55.1
Unique NamemRNA_P-littoralis_Contig110.55.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig110.55.1 vs. uniprot
Match: A0A6H5K2J8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2J8_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 1.530e-33
Identity = 77/166 (46.39%), Postives = 98/166 (59.04%), Query Frame = 1 
Query:   85 LLLERSLASTLMSALDKFREDEEVMADMAKVKRKVTEEAGKNAQLMETVKSIWGILYADDACIYCVSITWDPRNEYGDHRPCGRAVWTVGVRTRNGNHVLLAIGMKACSFMINATGMMFRQEKDVLYLGGMVYEDGSIEDEINHRVQAAHDCFRRNSQAIHGL*GG 582
            LL    +A+ LM+A  +  +D EVMADMAKVKRKVT+  G+NA+L+E VKSIW                  P+ E                        +LA GM+ACSF I+A GM+F+Q+KD +YLGG + +DGSIE EINHRVQ AH CFRRNSQA++   GG
Sbjct:   42 LLFNLFIAAMLMAAFAEISKDAEVMADMAKVKRKVTKGKGRNARLVEAVKSIW-----------------KPKTE---------------------TMCMLAKGMEACSFTIDAVGMVFKQKKDFVYLGGKICQDGSIEGEINHRVQRAHACFRRNSQAMYDRPGG 169
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig110.55.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K2J8_9PHAE1.530e-3346.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig110contigP-littoralis_Contig110:272559..273154 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size596
Hectar predicted targeting categoryother localisation
Exons1
Cds size573
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789433.8757641-UTR-P-littoralis_Contig110:272558..2725611680789433.8757641-UTR-P-littoralis_Contig110:272558..272561Pylaiella littoralis U1_48UTRP-littoralis_Contig110 272559..272561 +
1680789433.8991842-UTR-P-littoralis_Contig110:273134..2731541680789433.8991842-UTR-P-littoralis_Contig110:273134..273154Pylaiella littoralis U1_48UTRP-littoralis_Contig110 273135..273154 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789433.8887227-CDS-P-littoralis_Contig110:272561..2731341680789433.8887227-CDS-P-littoralis_Contig110:272561..273134Pylaiella littoralis U1_48CDSP-littoralis_Contig110 272562..273134 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig110.55.1prot_P-littoralis_Contig110.55.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig110 272562..273134 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig110.55.1

>prot_P-littoralis_Contig110.55.1 ID=prot_P-littoralis_Contig110.55.1|Name=mRNA_P-littoralis_Contig110.55.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=191bp
MTLSGIYREVGPVVPVAGVCWFKVIHSLLLERSLASTLMSALDKFREDEE
VMADMAKVKRKVTEEAGKNAQLMETVKSIWGILYADDACIYCVSITWDPR
NEYGDHRPCGRAVWTVGVRTRNGNHVLLAIGMKACSFMINATGMMFRQEK
DVLYLGGMVYEDGSIEDEINHRVQAAHDCFRRNSQAIHGL*
back to top

mRNA from alignment at P-littoralis_Contig110:272559..273154+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig110.55.1 ID=mRNA_P-littoralis_Contig110.55.1|Name=mRNA_P-littoralis_Contig110.55.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=596bp|location=Sequence derived from alignment at P-littoralis_Contig110:272559..273154+ (Pylaiella littoralis U1_48)
AGGATGACATTGTCAGGAATCTACCGCGAAGTTGGCCCAGTTGTCCCGGT
TGCTGGTGTGTGCTGGTTCAAGGTCATTCACTCTCTGCTGTTGGAACGTT
CTCTTGCTTCGACGCTCATGAGCGCACTCGACAAGTTCCGCGAGGACGAG
GAGGTGATGGCAGACATGGCCAAGGTCAAGAGGAAAGTGACTGAGGAAGC
GGGGAAGAACGCTCAACTGATGGAGACAGTGAAGTCCATCTGGGGTATAC
TCTACGCCGACGATGCATGTATTTATTGTGTCTCCATCACCTGGGATCCT
CGAAACGAATATGGCGACCATCGTCCGTGTGGCCGGGCGGTTTGGACTGT
TGGCGTCAGAACCCGAAACGGAAACCATGTGTTGCTCGCTATTGGGATGA
AGGCGTGCTCATTCATGATCAACGCTACCGGGATGATGTTCAGGCAAGAG
AAAGACGTTTTGTATCTCGGGGGTATGGTCTACGAGGACGGTAGCATCGA
GGATGAGATCAACCACCGAGTGCAGGCAGCGCACGACTGCTTCCGGCGCA
ATAGCCAGGCAATACACGGCCTTTGAGGGGGGAGGGGGGCTTCGAC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig110:272559..273154+

>mRNA_P-littoralis_Contig110.55.1 ID=mRNA_P-littoralis_Contig110.55.1|Name=mRNA_P-littoralis_Contig110.55.1|organism=Pylaiella littoralis U1_48|type=CDS|length=573bp|location=Sequence derived from alignment at P-littoralis_Contig110:272559..273154+ (Pylaiella littoralis U1_48)
ATGACATTGTCAGGAATCTACCGCGAAGTTGGCCCAGTTGTCCCGGTTGC
TGGTGTGTGCTGGTTCAAGGTCATTCACTCTCTGCTGTTGGAACGTTCTC
TTGCTTCGACGCTCATGAGCGCACTCGACAAGTTCCGCGAGGACGAGGAG
GTGATGGCAGACATGGCCAAGGTCAAGAGGAAAGTGACTGAGGAAGCGGG
GAAGAACGCTCAACTGATGGAGACAGTGAAGTCCATCTGGGGTATACTCT
ACGCCGACGATGCATGTATTTATTGTGTCTCCATCACCTGGGATCCTCGA
AACGAATATGGCGACCATCGTCCGTGTGGCCGGGCGGTTTGGACTGTTGG
CGTCAGAACCCGAAACGGAAACCATGTGTTGCTCGCTATTGGGATGAAGG
CGTGCTCATTCATGATCAACGCTACCGGGATGATGTTCAGGCAAGAGAAA
GACGTTTTGTATCTCGGGGGTATGGTCTACGAGGACGGTAGCATCGAGGA
TGAGATCAACCACCGAGTGCAGGCAGCGCACGACTGCTTCCGGCGCAATA
GCCAGGCAATACACGGCCTTTGA
back to top