mRNA_P-littoralis_Contig11.74.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig11.74.1 vs. uniprot
Match: A0A6H5JKK7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKK7_9PHAE) HSP 1 Score: 85.5 bits (210), Expect = 4.230e-17 Identity = 44/125 (35.20%), Postives = 67/125 (53.60%), Query Frame = 1
Query: 1 IKVGDKNLRSADLHVIFGVPAVEKAQRAWSIILEKVTVPSLVEQLQALGSPSEAWELMVEMYTALPTTAKETLEQEWINLEMQVGETPTLYFARAKTLRTKREKHGVTLSDSESNRHIARRLSSD 375
+ G + + L V G AV++A +AW +I+ K+ VP++V + A G P+E+W+ + Y T K L+ +W +L+ QVGE P Y R LR K E +G SD ++N H R L D
Sbjct: 65 VSAGKTDANISALKVEHGTEAVDRAVKAWQLIISKIQVPTIVPAILASGYPTESWDQFLNFYRVHAETDKLELQGQWYSLKQQVGEEPRRYLTRTSILRQKLEAYGWVQSDHDANAHYVRNLLPD 189
BLAST of mRNA_P-littoralis_Contig11.74.1 vs. uniprot
Match: A0A6H5KB85_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB85_9PHAE) HSP 1 Score: 84.7 bits (208), Expect = 1.160e-16 Identity = 45/122 (36.89%), Postives = 67/122 (54.92%), Query Frame = 1
Query: 10 GDKNLRSADLHVIFGVPAVEKAQRAWSIILEKVTVPSLVEQLQALGSPSEAWELMVEMYTALPTTAKETLEQEWINLEMQVGETPTLYFARAKTLRTKREKHGVTLSDSESNRHIARRLSSD 375
G + + L V G AV++A +AW +I+ K+ VP++V + A G P+E+W+ + Y T K L+ +W +L+ QVGE P Y RA LR K E +G SD ++N H R L D
Sbjct: 368 GKTDANISALKVEHGTEAVDRAVKAWQLIISKIQVPTIVPAILASGCPTESWDQFLNFYRVHAETDKLELQGQWYSLKQQVGEEPRRYLTRASVLRQKLEAYGWVQSDHDANVHYVRILLPD 489
BLAST of mRNA_P-littoralis_Contig11.74.1 vs. uniprot
Match: A0A6H5JQQ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQQ7_9PHAE) HSP 1 Score: 83.6 bits (205), Expect = 2.970e-16 Identity = 44/117 (37.61%), Postives = 66/117 (56.41%), Query Frame = 1
Query: 1 IKVGDKNLRSADLHVIFGVPAVEKAQRAWSIILEKVTVPSLVEQLQALGSPSEAWELMVEMYTALPTTAKETLEQEWINLEMQVGETPTLYFARAKTLRTKREKHGVTLSDSESNRH 351
I G +L + L V G AV++A +AW +I+ K+ VP++V + A G P+E+W+ + Y T K L+ +W +L+ QVGE P Y RA LR K E +G SD ++N H
Sbjct: 110 ISAGKTDLDISALKVEHGTVAVDRAVKAWQLIISKIQVPTIVPAILASGCPTESWDQFLNYYRVHAETDKLELQGQWYSLKQQVGEEPRRYLTRASVLRQKLEAYGWGQSDHDANVH 226
BLAST of mRNA_P-littoralis_Contig11.74.1 vs. uniprot
Match: A0A6H5JKH8_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKH8_9PHAE) HSP 1 Score: 83.6 bits (205), Expect = 3.250e-16 Identity = 43/125 (34.40%), Postives = 68/125 (54.40%), Query Frame = 1
Query: 1 IKVGDKNLRSADLHVIFGVPAVEKAQRAWSIILEKVTVPSLVEQLQALGSPSEAWELMVEMYTALPTTAKETLEQEWINLEMQVGETPTLYFARAKTLRTKREKHGVTLSDSESNRHIARRLSSD 375
I G + + L+V G AV++A +AW +I+ K+ VP++V + G P+E+W+ + ++ T K L+ +W +L+ Q GE P Y RA LR K E +G SD ++N H R L D
Sbjct: 110 ISAGKTDANISALNVEHGTEAVDRAVKAWQLIISKIQVPTIVPAILTSGCPTESWDQFLNLFRVHAETDKLELQGQWYSLKQQSGEEPRRYLTRASVLRQKLEAYGWAQSDHDANVHYVRNLLPD 234
BLAST of mRNA_P-littoralis_Contig11.74.1 vs. uniprot
Match: A0A6H5JCR6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCR6_9PHAE) HSP 1 Score: 82.4 bits (202), Expect = 8.380e-16 Identity = 44/125 (35.20%), Postives = 68/125 (54.40%), Query Frame = 1
Query: 1 IKVGDKNLRSADLHVIFGVPAVEKAQRAWSIILEKVTVPSLVEQLQALGSPSEAWELMVEMYTALPTTAKETLEQEWINLEMQVGETPTLYFARAKTLRTKREKHGVTLSDSESNRHIARRLSSD 375
I G+ + + L V G AV++A +AW +I+ K+ VP++V + GSP+E+W+ + + K L+ +W +L+ QVGE P Y RA LR K E +G SD ++N H R L D
Sbjct: 110 ISAGNTDANISALKVEHGTEAVDRAFKAWQLIISKIQVPTIVPAILDSGSPTESWDQFLNFCRVHAESDKLELQGQWYSLKQQVGEEPRRYLTRASVLRQKLEAYGWVQSDHDANVHYVRNLLPD 234
BLAST of mRNA_P-littoralis_Contig11.74.1 vs. uniprot
Match: A0A6H5LNE2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LNE2_9PHAE) HSP 1 Score: 81.3 bits (199), Expect = 2.010e-15 Identity = 44/125 (35.20%), Postives = 67/125 (53.60%), Query Frame = 1
Query: 1 IKVGDKNLRSADLHVIFGVPAVEKAQRAWSIILEKVTVPSLVEQLQALGSPSEAWELMVEMYTALPTTAKETLEQEWINLEMQVGETPTLYFARAKTLRTKREKHGVTLSDSESNRHIARRLSSD 375
I+VG+ + + L V G AV++A +AW +I+ K+ VP++V + A G P+E+W+ + Y K L+ + L+ QVGE P Y RA R K E +G SD ++N H R L D
Sbjct: 401 IRVGNTDANISALKVEHGTEAVDRAVKAWQLIISKIQVPTIVPAILASGCPTESWDQFLNFYRVYAERDKLELQGQLYTLKQQVGEEPRRYLTRASAPRQKLEAYGWVQSDHDANVHYVRNLMPD 525
BLAST of mRNA_P-littoralis_Contig11.74.1 vs. uniprot
Match: A0A6H5LC04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LC04_9PHAE) HSP 1 Score: 78.2 bits (191), Expect = 2.520e-14 Identity = 43/125 (34.40%), Postives = 66/125 (52.80%), Query Frame = 1
Query: 1 IKVGDKNLRSADLHVIFGVPAVEKAQRAWSIILEKVTVPSLVEQLQALGSPSEAWELMVEMYTALPTTAKETLEQEWINLEMQVGETPTLYFARAKTLRTKREKHGVTLSDSESNRHIARRLSSD 375
I+VG + + L V G AV++A +AW +I+ + VP++ + A G P+E+W+ + Y T K L+ + +L+ QVGE P Y RA LR E +G SD ++N H R L D
Sbjct: 97 IRVGKTDANISALKVEHGTEAVDRAVKAWQLIISNMQVPTIFPAILASGCPTESWDQFLNFYRVHAETEKLELQGQRYSLKQQVGEEPLRYLTRASVLRQNLEAYGWVQSDHDANFHYVRNLLPD 221
BLAST of mRNA_P-littoralis_Contig11.74.1 vs. uniprot
Match: A0A6H5JN82_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN82_9PHAE) HSP 1 Score: 73.2 bits (178), Expect = 1.080e-12 Identity = 39/122 (31.97%), Postives = 64/122 (52.46%), Query Frame = 1
Query: 1 IKVGDKNLRSADLHVIFGVPAVEKAQRAWSIILEKVTVPSLVEQLQALGSPSEAWELMVEMYTALPTTAKETLEQEWINLEMQVGETPTLYFARAKTLRTKREKHGVTLSDSESNRHIARRL 366
I+VG + L +G A+EKA +AW +IL K+ V S+V + + G P+E+W + + T + +L+ EW L V P Y +R LR + GV +++ ++NRH+ R L
Sbjct: 160 IRVGKSDADIPKLKEEYGRKAIEKAMKAWELILAKIQVASIVPAIISSGCPTESWRIFRNHFQLHAHTERTSLQLEWQELTQGVQHHPKEYLSRGWVLRQRLSSWGVKITEDDANRHLVRNL 281 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig11.74.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig11.74.1 >prot_P-littoralis_Contig11.74.1 ID=prot_P-littoralis_Contig11.74.1|Name=mRNA_P-littoralis_Contig11.74.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=125bp IKVGDKNLRSADLHVIFGVPAVEKAQRAWSIILEKVTVPSLVEQLQALGSback to top mRNA from alignment at P-littoralis_Contig11:423580..423956- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig11.74.1 ID=mRNA_P-littoralis_Contig11.74.1|Name=mRNA_P-littoralis_Contig11.74.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=377bp|location=Sequence derived from alignment at P-littoralis_Contig11:423580..423956- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig11:423580..423956- >mRNA_P-littoralis_Contig11.74.1 ID=mRNA_P-littoralis_Contig11.74.1|Name=mRNA_P-littoralis_Contig11.74.1|organism=Pylaiella littoralis U1_48|type=CDS|length=375bp|location=Sequence derived from alignment at P-littoralis_Contig11:423580..423956- (Pylaiella littoralis U1_48)back to top |