mRNA_P-littoralis_Contig11.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig11.2.1
Unique NamemRNA_P-littoralis_Contig11.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig11.2.1 vs. uniprot
Match: D8LPU0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPU0_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 4.120e-19
Identity = 60/163 (36.81%), Postives = 88/163 (53.99%), Query Frame = 1 
Query:  145 GGGARQILAMGSVELENVSRTTYLGSGRGRAVEDVDLERRVEALFGLIGFLATYMVDENSVARRRFRALEEDLARTLVKIRDFFSSNRRLVAIDQFVTAFTVAFNTAFGEWARDLAEEGIKLQ--SGRQGGGIPTADNGQLSPIPLPAFAGLWRMLEIAPLTQ 627
            G  A Q+ AMG V++   S     G+G G+    +D++RRV+ LF ++G L  + V ++ VA+ RF A E +   +  +IR FF+++  L   D+F  AF  AFN  F EWA  +AE   +    SGR    IP+A  G L PIP  A    W +  +APL +
Sbjct:   15 GSAAAQMYAMGGVDVRCFSGRGCEGAGGGQQEVVLDMDRRVDILFDVVGRLGKFAVQDD-VAKHRFSAWEGETRASAKRIRAFFTAHLLLARSDRFKGAFATAFNRDFEEWALGVAERAFETAPWSGR----IPSAKAGDLPPIPPIALDMTWTLFTLAPLME 172
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BLAST of mRNA_P-littoralis_Contig11.2.1 vs. uniprot
Match: A0A6H5KE60_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE60_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 3.310e-16
Identity = 70/205 (34.15%), Postives = 96/205 (46.83%), Query Frame = 1 
Query:   10 MSADEKKYRTGGRVAAVWTFIRGNGRGLPFKSDDIKMTADRYQMDGGGARQILAMGSVELENVSRTTYLGSGRGRAVEDVDLERRVEALFGLIGFLATYMVDE-NSVARRRFRALEEDLARTLVKIRDFFSSNRRLVAIDQFVTAFTVAFNTAFGEWARDLAEEGIKLQSGRQGGGIPTADNGQLSPIPLPAFAGLWRMLEIAPL 621
            MSA EKKYR GGR  A+WTFI G  +    +S+  +         G   R+            S      +G G    D++L+RRVEALF LIG+LA+  VD  +  AR R   +   LA  +  +R +F+++  L    +F  AF  A NT   EW   +    +  Q    GGG  T    QL  IPLP F     ++ +APL
Sbjct:  164 MSAAEKKYREGGRAVAIWTFIEGMVKSC--RSEQPRTCRCWPGNSGRMGRERRRSRPWPGWRCSVFRPKHTGGGLMDVDMELDRRVEALFELIGYLASDTVDPADREARFRTSGITAHLAGMVTTVRRYFAADGLLTRGWRFREAFMRALNTDLEEWTAVVTARALAEQEKAGGGG--TTGGMQLGEIPLPQFTHTHLLMPLAPL 364
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BLAST of mRNA_P-littoralis_Contig11.2.1 vs. uniprot
Match: A0A6H5JUU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUU3_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 5.890e-8
Identity = 39/100 (39.00%), Postives = 56/100 (56.00%), Query Frame = 1 
Query:  244 DVDLERRVEALFGLIGFLATYMVDE-NSVARRRFRALEEDLARTLVKIRDFFSSNRRLVAIDQFVTAFTVAFNTAFGEWARDLAEEGIKLQSGRQGGGIP 540
            D++L+RRVEALF LIG+LA+ ++D  +  AR R   +   LA     +R +F++N  L    +F  AF  AFNT   EW   +    +  Q+   GGGIP
Sbjct:    4 DMELDRRVEALFELIGYLASCILDPADREARFRTSRITAHLAGMATAVRLYFAANGLLTRGWRFREAFMRAFNTDLEEWTAAVTARALAEQAKAGGGGIP 103
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig11.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LPU0_ECTSI4.120e-1936.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KE60_9PHAE3.310e-1634.15Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JUU3_9PHAE5.890e-839.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig11contigP-littoralis_Contig11:3170..3802 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size633
Hectar predicted targeting categoryother localisation
Exons1
Cds size624
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789425.0788276-UTR-P-littoralis_Contig11:3169..31781680789425.0788276-UTR-P-littoralis_Contig11:3169..3178Pylaiella littoralis U1_48UTRP-littoralis_Contig11 3170..3178 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789425.0873373-CDS-P-littoralis_Contig11:3178..38021680789425.0873373-CDS-P-littoralis_Contig11:3178..3802Pylaiella littoralis U1_48CDSP-littoralis_Contig11 3179..3802 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig11.2.1prot_P-littoralis_Contig11.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig11 3179..3802 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig11.2.1

>prot_P-littoralis_Contig11.2.1 ID=prot_P-littoralis_Contig11.2.1|Name=mRNA_P-littoralis_Contig11.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=208bp
MSADEKKYRTGGRVAAVWTFIRGNGRGLPFKSDDIKMTADRYQMDGGGAR
QILAMGSVELENVSRTTYLGSGRGRAVEDVDLERRVEALFGLIGFLATYM
VDENSVARRRFRALEEDLARTLVKIRDFFSSNRRLVAIDQFVTAFTVAFN
TAFGEWARDLAEEGIKLQSGRQGGGIPTADNGQLSPIPLPAFAGLWRMLE
IAPLTQLT
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mRNA from alignment at P-littoralis_Contig11:3170..3802+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig11.2.1 ID=mRNA_P-littoralis_Contig11.2.1|Name=mRNA_P-littoralis_Contig11.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=633bp|location=Sequence derived from alignment at P-littoralis_Contig11:3170..3802+ (Pylaiella littoralis U1_48)
AAAGAGGCCATGTCGGCGGACGAGAAAAAGTACAGGACAGGTGGTAGGGT
GGCGGCCGTATGGACTTTCATCCGGGGGAACGGGCGGGGGCTGCCCTTTA
AAAGTGACGACATCAAGATGACCGCCGACAGGTACCAGATGGACGGCGGG
GGAGCGCGGCAGATACTTGCCATGGGCTCGGTGGAGCTAGAAAATGTTTC
GAGAACGACGTACTTGGGATCGGGGCGAGGGCGAGCCGTGGAAGACGTCG
ACCTGGAACGCCGTGTGGAGGCTTTGTTCGGGCTCATTGGGTTTCTGGCG
ACGTATATGGTAGACGAGAACTCAGTGGCGAGGCGCCGCTTTCGCGCGTT
GGAGGAGGACTTGGCGCGGACGTTGGTCAAGATTCGGGATTTCTTCTCGT
CAAACCGGCGGCTGGTGGCAATAGATCAATTTGTGACGGCGTTCACAGTC
GCCTTTAATACCGCTTTCGGAGAGTGGGCGCGGGACCTCGCGGAGGAAGG
AATCAAGTTGCAGAGCGGTCGGCAAGGGGGGGGGATACCAACCGCAGACA
ACGGGCAGCTGAGCCCGATTCCGTTGCCTGCTTTTGCCGGACTTTGGAGA
ATGCTGGAGATCGCGCCGCTGACGCAACTAACA
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Coding sequence (CDS) from alignment at P-littoralis_Contig11:3170..3802+

>mRNA_P-littoralis_Contig11.2.1 ID=mRNA_P-littoralis_Contig11.2.1|Name=mRNA_P-littoralis_Contig11.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=624bp|location=Sequence derived from alignment at P-littoralis_Contig11:3170..3802+ (Pylaiella littoralis U1_48)
ATGTCGGCGGACGAGAAAAAGTACAGGACAGGTGGTAGGGTGGCGGCCGT
ATGGACTTTCATCCGGGGGAACGGGCGGGGGCTGCCCTTTAAAAGTGACG
ACATCAAGATGACCGCCGACAGGTACCAGATGGACGGCGGGGGAGCGCGG
CAGATACTTGCCATGGGCTCGGTGGAGCTAGAAAATGTTTCGAGAACGAC
GTACTTGGGATCGGGGCGAGGGCGAGCCGTGGAAGACGTCGACCTGGAAC
GCCGTGTGGAGGCTTTGTTCGGGCTCATTGGGTTTCTGGCGACGTATATG
GTAGACGAGAACTCAGTGGCGAGGCGCCGCTTTCGCGCGTTGGAGGAGGA
CTTGGCGCGGACGTTGGTCAAGATTCGGGATTTCTTCTCGTCAAACCGGC
GGCTGGTGGCAATAGATCAATTTGTGACGGCGTTCACAGTCGCCTTTAAT
ACCGCTTTCGGAGAGTGGGCGCGGGACCTCGCGGAGGAAGGAATCAAGTT
GCAGAGCGGTCGGCAAGGGGGGGGGATACCAACCGCAGACAACGGGCAGC
TGAGCCCGATTCCGTTGCCTGCTTTTGCCGGACTTTGGAGAATGCTGGAG
ATCGCGCCGCTGACGCAACTAACA
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