mRNA_P-littoralis_Contig1096.21.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1096.21.1
Unique NamemRNA_P-littoralis_Contig1096.21.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1096.21.1 vs. uniprot
Match: A0A6H5JV45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV45_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 8.380e-17
Identity = 42/51 (82.35%), Postives = 45/51 (88.24%), Query Frame = 1 
Query:   13 LVRPVFPSSTRDVAGRPCVPLELKKQVLGVLQVLGRGNCFADVANFSLMSQ 165
            LVR VFP++TRDVAGR CVPLELK  VLGVLQVLGRGNCFADVA  SLMS+
Sbjct:   89 LVRTVFPTATRDVAGRQCVPLELK--VLGVLQVLGRGNCFADVAQLSLMSR 137
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BLAST of mRNA_P-littoralis_Contig1096.21.1 vs. uniprot
Match: A0A6H5L0H2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0H2_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 9.740e-17
Identity = 41/52 (78.85%), Postives = 45/52 (86.54%), Query Frame = 1 
Query:   13 LVRPVFPSSTRDVAGRPCVPLELKKQVLGVLQVLGRGNCFADVANFSLMSQS 168
            +VRPVFP+   DV GR CVPLELK  VLGVLQVLGRGNCFADVANFSLMS++
Sbjct:  187 MVRPVFPAREHDVCGRLCVPLELK--VLGVLQVLGRGNCFADVANFSLMSRT 236
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BLAST of mRNA_P-littoralis_Contig1096.21.1 vs. uniprot
Match: A0A6H5JY35_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY35_9PHAE)

HSP 1 Score: 52.0 bits (123), Expect = 2.180e-6
Identity = 24/27 (88.89%), Postives = 26/27 (96.30%), Query Frame = 1 
Query:   88 QVLGVLQVLGRGNCFADVANFSLMSQS 168
            QVLGVLQ LGRGNCFADVANFSLMS++
Sbjct:    5 QVLGVLQALGRGNCFADVANFSLMSRT 31
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BLAST of mRNA_P-littoralis_Contig1096.21.1 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE)

HSP 1 Score: 48.5 bits (114), Expect = 4.640e-5
Identity = 23/48 (47.92%), Postives = 33/48 (68.75%), Query Frame = 1 
Query:   19 RPVFPSSTRDVAGRPCVPLELKKQVLGVLQVLGRGNCFADVANFSLMS 162
            R  FP+  +D +GR  +P++LK  VL  LQ+L RGNCFAD+ + S +S
Sbjct:  137 RDWFPTGKQDASGRRGIPVQLK--VLACLQILARGNCFADIYHMSFIS 182
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BLAST of mRNA_P-littoralis_Contig1096.21.1 vs. uniprot
Match: A0A6H5JPH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH7_9PHAE)

HSP 1 Score: 48.1 bits (113), Expect = 6.350e-5
Identity = 25/48 (52.08%), Postives = 31/48 (64.58%), Query Frame = 1 
Query:   19 RPVFPSSTRDVAGRPCVPLELKKQVLGVLQVLGRGNCFADVANFSLMS 162
            R  FP+   DV GR  VP+ELK  VL  LQ+L RGN FAD+ + S +S
Sbjct:  153 RDWFPTGESDVTGRQAVPVELK--VLACLQILSRGNVFADIYHMSFIS 198
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1096.21.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JV45_9PHAE8.380e-1782.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L0H2_9PHAE9.740e-1778.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JY35_9PHAE2.180e-688.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAU4_9PHAE4.640e-547.92Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPH7_9PHAE6.350e-552.08Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1096contigP-littoralis_Contig1096:69105..70315 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size168
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size168
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789423.428942-CDS-P-littoralis_Contig1096:69104..691881680789423.428942-CDS-P-littoralis_Contig1096:69104..69188Pylaiella littoralis U1_48CDSP-littoralis_Contig1096 69105..69188 -
1680789423.4400434-CDS-P-littoralis_Contig1096:70231..703151680789423.4400434-CDS-P-littoralis_Contig1096:70231..70315Pylaiella littoralis U1_48CDSP-littoralis_Contig1096 70232..70315 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1096.21.1prot_P-littoralis_Contig1096.21.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1096 69105..70315 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1096.21.1

>prot_P-littoralis_Contig1096.21.1 ID=prot_P-littoralis_Contig1096.21.1|Name=mRNA_P-littoralis_Contig1096.21.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=56bp
FVCGLVRPVFPSSTRDVAGRPCVPLELKKQVLGVLQVLGRGNCFADVANF
SLMSQS
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mRNA from alignment at P-littoralis_Contig1096:69105..70315-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1096.21.1 ID=mRNA_P-littoralis_Contig1096.21.1|Name=mRNA_P-littoralis_Contig1096.21.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1211bp|location=Sequence derived from alignment at P-littoralis_Contig1096:69105..70315- (Pylaiella littoralis U1_48)
TTCGTTTGTGGACTGGTGAGGCCGGTCTTCCCATCTTCTACAAGAGACGT
CGCTGGGCGTCCCTGCGTCCCCTTGGAGTTGAAGGTGGGTGCGATTGAGA
CTGAAGCTTTGTCATGTTGGACTCGGCAGTCTCTTCTACATGTGAATGCG
TTGGTGTGGATGTGTGTTCAAGGTCATGTCGCACATGGGAAAACAGCAGT
ACAGCATATTACCAGGTACCGGTATGTATCATATGATGATAAATCGTATA
CTGCTACAAACTAATGATACGTGTGCAGACTGGGAAACCGCTCCGCATCA
ACAACAGCGCTACGATCTGTTTTCACAGCACTCCCTACAGCAGGTCCTGG
TGTCGCGTTGAAAAATGGTACGCTACAGCAGTACCGTAGTATATTGCTGT
ACTCGTAGCACTCGCGCCCACAGAAAAAACAGCACCATTATATGCGAATG
TATGCGTACGTACGTAGTACTTCGAAGTACGTAAACAACAGTCCACGCCA
CAGAGACATGTTGTAGTGTCCCGGCCAAGGACTGCGTGTCAACAGCAGTA
CACCTCTACCACAGTTGTCCCCGTTATTATCCACAGGCCTCGGTCTGCGG
AAGTGCGTGTGGGATCGAATTCGACGCGTAGCACCGCTGTAGACGCGCAG
TCTATCAGACGTACATGATACTTCGAAGTATGAAAAATACAGCATACAGC
AGTACGACGTTTGTACGAGTACGTGATACGCTGAGCGCAAGGAGGCATGT
TTTTTCTCCATCGGCTGCGTGTCGAAGCACAAGCTCGTGCCACTTTTTCT
CCTCGTACTCATCGACGGACACCAGTCTGCTGAAGGGCGCGAGCTTGTAT
TTTGGTTAAGCTACTGCTGTAAACGTGAACACGCAGTGGATGACACCGGA
GATTAGGTTTGCGCCAGCTACTTCTGTAGACACGATACCAGCAGTGGTAG
ATGCTCGTATGCCCGTATAAAATCTAGTCGTACTGACTATAGTAGCGTTT
TTCTGTTGAAATATAACCTCTGGATGAAGTGCAATCAAATGTTGCCGTCT
TCGCAGCCAGCGTATCTAACGAATACCTCCATTACTTACCGCTGCCTCTG
TAACACCTACTCTTGGTTTGTCGAAAGAAACAGGTGCTGGGGGTGCTGCA
GGTATTGGGTAGAGGCAACTGCTTCGCGGATGTTGCGAACTTTTCGCTGA
TGAGCCAATCT
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Coding sequence (CDS) from alignment at P-littoralis_Contig1096:69105..70315-

>mRNA_P-littoralis_Contig1096.21.1 ID=mRNA_P-littoralis_Contig1096.21.1|Name=mRNA_P-littoralis_Contig1096.21.1|organism=Pylaiella littoralis U1_48|type=CDS|length=168bp|location=Sequence derived from alignment at P-littoralis_Contig1096:69105..70315- (Pylaiella littoralis U1_48)
TTCGTTTGTGGACTGGTGAGGCCGGTCTTCCCATCTTCTACAAGAGACGT
CGCTGGGCGTCCCTGCGTCCCCTTGGAGTTGAAGAAACAGGTGCTGGGGG
TGCTGCAGGTATTGGGTAGAGGCAACTGCTTCGCGGATGTTGCGAACTTT
TCGCTGATGAGCCAATCT
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