mRNA_P-littoralis_Contig1068.15.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1068.15.1
Unique NamemRNA_P-littoralis_Contig1068.15.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1068.15.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1068contigP-littoralis_Contig1068:65975..66292 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size303
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size153
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789398.426154-UTR-P-littoralis_Contig1068:65974..660961680789398.426154-UTR-P-littoralis_Contig1068:65974..66096Pylaiella littoralis U1_48UTRP-littoralis_Contig1068 65975..66096 +
1680789398.4525225-UTR-P-littoralis_Contig1068:66264..662921680789398.4525225-UTR-P-littoralis_Contig1068:66264..66292Pylaiella littoralis U1_48UTRP-littoralis_Contig1068 66265..66292 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789398.4352565-CDS-P-littoralis_Contig1068:66096..661501680789398.4352565-CDS-P-littoralis_Contig1068:66096..66150Pylaiella littoralis U1_48CDSP-littoralis_Contig1068 66097..66150 +
1680789398.4428737-CDS-P-littoralis_Contig1068:66165..662641680789398.4428737-CDS-P-littoralis_Contig1068:66165..66264Pylaiella littoralis U1_48CDSP-littoralis_Contig1068 66166..66264 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1068.15.1prot_P-littoralis_Contig1068.15.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1068 66097..66264 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1068.15.1

>prot_P-littoralis_Contig1068.15.1 ID=prot_P-littoralis_Contig1068.15.1|Name=mRNA_P-littoralis_Contig1068.15.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=51bp
MFRATSSPASQGRHGDTILMIRVCFCVFSFSVFSDCRGYLYVAGSTPDSN
*
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mRNA from alignment at P-littoralis_Contig1068:65975..66292+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1068.15.1 ID=mRNA_P-littoralis_Contig1068.15.1|Name=mRNA_P-littoralis_Contig1068.15.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=318bp|location=Sequence derived from alignment at P-littoralis_Contig1068:65975..66292+ (Pylaiella littoralis U1_48)
GAGAGCGGCGGTGATGGAGGTGACCTAAGGCAACGCCGGCAGTGAAGAAG
CGTTAAGAGCATGGTGCTGGTGATGTGGCCTTGGGCAACGCCAACAGCAA
CGTGGACCCAGACAAGGAGGACATGTTTAGGGCGACATCATCACCAGCGT
CGCAAGGACGGCATGGAGACACCATCCTCGACAACATCTATCTGATGATA
CGTGTGTGTTTTTGTGTTTTCTCTTTTTCTGTCTTCTCCGATTGCCGGGG
CTACTTGTACGTTGCAGGCAGCACTCCAGACAGCAACTAACTGCTGTAGT
CTGCAGCTACCTACTGAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1068:65975..66292+

>mRNA_P-littoralis_Contig1068.15.1 ID=mRNA_P-littoralis_Contig1068.15.1|Name=mRNA_P-littoralis_Contig1068.15.1|organism=Pylaiella littoralis U1_48|type=CDS|length=153bp|location=Sequence derived from alignment at P-littoralis_Contig1068:65975..66292+ (Pylaiella littoralis U1_48)
ATGTTTAGGGCGACATCATCACCAGCGTCGCAAGGACGGCATGGAGACAC
CATCCTGATGATACGTGTGTGTTTTTGTGTTTTCTCTTTTTCTGTCTTCT
CCGATTGCCGGGGCTACTTGTACGTTGCAGGCAGCACTCCAGACAGCAAC
TAA
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