mRNA_P-littoralis_Contig1068.13.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1068.13.1
Unique NamemRNA_P-littoralis_Contig1068.13.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1068.13.1 vs. uniprot
Match: D7FYA3_ECTSI (TFIIIC_sub6 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYA3_ECTSI)

HSP 1 Score: 160 bits (404), Expect = 4.410e-45
Identity = 75/103 (72.82%), Postives = 91/103 (88.35%), Query Frame = 3 
Query:  186 MDCEEEYDEEDVYVMVQLPSSVDGEALLSSSAVTVKGVGTSTPQLKVGEEVYKGKTEPIVGTTMAFITPKAGSAGREPLELACFSTMQMTFSKPPAARRKKRK 494
            MD EEEYDEEDVY++V LP +VDGEALLS+S+V+VKG+GT TPQLKVGEEVY+G  EPI+GTTMAF TPK G++GREPLELACFS M+M FS+PPA R+++ K
Sbjct:    1 MDVEEEYDEEDVYIVVDLPPAVDGEALLSASSVSVKGIGTKTPQLKVGEEVYEGNAEPIIGTTMAFTTPKPGASGREPLELACFSNMKMAFSQPPARRQRRSK 103
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1068.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FYA3_ECTSI4.410e-4572.82TFIIIC_sub6 domain-containing protein n=1 Tax=Ecto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1068contigP-littoralis_Contig1068:57800..64837 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog5217.XP_007006554.1
PFAMsTFIIIC_sub6
Model size1166
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
Exons4
Evalue8.29e-05
EggNOG OGs2D0DX@1|root,2SDUE@2759|Eukaryota,38ITE@33154|Opisthokonta,3PKQP@4751|Fungi,3VAK1@5204|Basidiomycota,3VHF2@5234|Tremellales
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-24_003220.1
DescriptionTFIIIC subunit
Cds size432
COG categoryS
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1068.13.1prot_P-littoralis_Contig1068.13.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1068 57865..64168 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789398.7009158-UTR-P-littoralis_Contig1068:57799..578641680789398.7009158-UTR-P-littoralis_Contig1068:57799..57864Pylaiella littoralis U1_48UTRP-littoralis_Contig1068 57800..57864 +
1680789398.7566087-UTR-P-littoralis_Contig1068:64168..648371680789398.7566087-UTR-P-littoralis_Contig1068:64168..64837Pylaiella littoralis U1_48UTRP-littoralis_Contig1068 64169..64837 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789398.7136438-CDS-P-littoralis_Contig1068:57864..580921680789398.7136438-CDS-P-littoralis_Contig1068:57864..58092Pylaiella littoralis U1_48CDSP-littoralis_Contig1068 57865..58092 +
1680789398.724465-CDS-P-littoralis_Contig1068:60821..609361680789398.724465-CDS-P-littoralis_Contig1068:60821..60936Pylaiella littoralis U1_48CDSP-littoralis_Contig1068 60822..60936 +
1680789398.7325182-CDS-P-littoralis_Contig1068:62745..628081680789398.7325182-CDS-P-littoralis_Contig1068:62745..62808Pylaiella littoralis U1_48CDSP-littoralis_Contig1068 62746..62808 +
1680789398.746619-CDS-P-littoralis_Contig1068:64142..641681680789398.746619-CDS-P-littoralis_Contig1068:64142..64168Pylaiella littoralis U1_48CDSP-littoralis_Contig1068 64143..64168 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1068.13.1

>prot_P-littoralis_Contig1068.13.1 ID=prot_P-littoralis_Contig1068.13.1|Name=mRNA_P-littoralis_Contig1068.13.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=144bp
MLRREKRKQQQEKEVPPQGQQDDGGQRDEEEEEEEEFPAGMDCEEEYDEE
DVYVMVQLPSSVDGEALLSSSAVTVKGVGTSTPQLKVGEEVYKGKTEPIV
GTTMAFITPKAGSAGREPLELACFSTMQMTFSKPPAARRKKRK*
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mRNA from alignment at P-littoralis_Contig1068:57800..64837+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1068.13.1 ID=mRNA_P-littoralis_Contig1068.13.1|Name=mRNA_P-littoralis_Contig1068.13.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=7038bp|location=Sequence derived from alignment at P-littoralis_Contig1068:57800..64837+ (Pylaiella littoralis U1_48)
CGCGTTCGTCGGGTGCGGTGCGGCAGCAGACTTGACAAAGCGAGGCAGCT
GCCGTCGAGGCAGTCATGTTGCGCAGAGAAAAAAGAAAACAGCAGCAGGA
GAAGGAGGTACCACCCCAGGGGCAGCAGGATGATGGGGGGCAGAGGGACG
AGGAGGAAGAGGAAGAGGAGGAGTTCCCCGCAGGCATGGACTGCGAGGAG
GAATACGACGAGGAGGATGTGTACGTTATGGTTCAACTGCCGTCTTCTGT
TGACGGGGAAGCTCTGTTGTCGTCATCAGCCGTTACGGTCAAGGTGGGTT
GTGTGTTGTGTGTCGCGTGTGTCCTGCTGTGTGTGTGCGGCGGCGCCCGC
GATCCGCGTGTGCACCTTAACAGGTTTTACAGGTAAAACGTTTTCACAGC
GACAGCGACCCAGACCTTCCCAAGGCACAGCAGTAACCAACCTGTCCTCT
GTCCTGTCCACCTCTCACACGGGTGAAGGTTAGCGGTACGGGATGGGCGC
CCGTACTTTGGGATGAAGCTAGGCTGGGTTGAAACCTGCTTTCATGTTGA
AGGTGTGTCAATAGCGTGTCTACCTCCAAGCAAATAAATAATCAATTGCG
TTCAGTTGGGGACACCTGCTGGCGCCATGTGTGTGTCTCTGTGTCTCTCA
AACGTGTCTGCGTGCGTGTTTGTCTGTCCGTCTTTCGTTTTCTGGGCGGG
CGACCAGGCGCTAACACCCTTCCAGCCGAGTCGGGAAGATATGAAGTACT
TGTCATGTTTCCTTCCAACGACACGCAGAAAAGAAAAGAACAGAGAGCCC
CAAGGATGAGGGGGCTCCGTCACTCACCACCTCAACCGATCGCATACCCT
ACACAACAGAGAGCCCCAAGGATGAGGGGGCTCCGTCACTCACCACCTCA
ACCGATCGCATACCCTACACGACAGAACGTCCCAACATCTCATGCACCAC
CCCACGCACGTTTCAGTACTCGTAGGTGTTACGTATACAGTTAGCATGGG
TGTGCTATACTCCGCGTACAGTACCGAACGACGCGTACCCCGAGTCTGTC
TGTCTGGACAGCAGTATCTACGTGTAACTTGTGGATTTCTCCCACATCTA
TCGTGCGGCTGTATTCTGAACTATTTGGGATATTCGTGTGCGTTGCTAGT
CCCCAAGGGTGTATTTTTCTCTCCTTACTTTTTGTGCGTTAGGCCATGGA
ACAAGTATCGTAGCAAAGGCAACTCGGAGAGACGTGAGTGACGTTTGCTG
GGCATGCAGCCCCATAAGGCGAAACATAGATAGAAAGAAAACATTCCTTC
ATGCAAGACGACCATCAACTCGACACACACAAACACACATACACACACCA
ACAAACCACACGCAGCGAAGATCGATGCTTGCACACCACCGAGTCAACCA
AGCCGGTCCACAAGTCTCAGCCGACGCCCACGGCAGTATGTACAAAAGGT
TCTCTGCGAGCCACAGCGTTGGGGCTCTCTCATTGTCTCTGAAGGGAGGG
GGGGCTTGAAGAAGGGCTCGCCCGATACCGGTAGTCGATGGTGCAAAATC
GAAAAAAGGCATGAGCACACAGCAGCGCAACGTGACAACAATAATTTGCG
AGTTTGAAGAGTCACCCGCTGCACCAGCCGGAGGTGCAAACACACGAATC
AAAGTTTACGCATCAAAGTTTCGCCTGCCACAGGATACCGTAGCTGGTTG
TTGTTGTTGTTGATTCTCACATTAGCTCATCGCCAAAATCTAGCCCGTGG
TCACAAAAAGTGCTGAGCCCTAGGAAGATCCAAGGAATAGAAAGAAACTA
CTTCGAAGTACAAGGGAATACCCAAGAAAGACCGAAGAAGATACACCTTC
CTACGCGGTGTGCATCACTGAACTACAGCAGGGACAGCAGTACCAACATC
AAACGTACTTCCAGCGTCGTTCATTTGACTACAGCATCGTGTTCAGTCTC
CTCCCGCCCCACTTATAACAAATAACCTGCTGCTACAAGCAGTCAGTAGG
TAGCTGCAGACTACAGCAGTTAGTTGCTGTCTGGAGTGCTGCCTGCAACG
TACAAGTAGCCCCGGCAATCGGAGAAGACAGAAAAAGAGAAAACACAAAA
ACACACACGTATCATCAGATAGATGTTGTCGAGGATGGTGTCTCCATGCC
GTCCTTGCGACGCTGGTGATGATGTCGCCCTAAACATGTCCTCCTTGTCT
GGGTCCACGTTGCTGTTGGCGTTGCCCAAGGCCACATCACCAGCACCATG
CTCTTAACGCTTCTTCACTGCCGGCGTTGCCTTAGGTCACCTCCATCACC
GCCGCTCTCTCACATAAAATCTCTTTCTTGGTGTTTCTTTCCAATCAGCT
GGTATGAGCTCGTTGAGAGCTCTCCAAAGCGGGCTGACTACGTACACAGG
GGTACGTACAATGTCGTTACACTTGCACCTTGACCTGAGATCGTCCTTTG
GGAGTCGATCGATCAGGGGGGGAACACTCTCACTCTTGTGTGGCCATGTT
CCACACTTGCGAAAATGTTTCAAGTATGATATGGAGATTTGATTCGACAC
GCTTTCTCAATTTAGAAGTGGAGAACCCAATCTCCTTGCGTAGCTCAGGG
AATACTGCTGCTGTACCTGGTGTGTCCCAGCCGTGTACATACAGCCACAG
CCGGGGCTGGGTGAGATAACATCCGCGGCAGTTTCAGATGGTTTCAAGAA
ACACCTTGTGTTCGTTTTTAGGAGTGCACCCTGTGTTGGTCGTTAGTATT
TATGTATTTACACCTTGCGTTCGATGTTAATCTGCTCGAGATGCTCGCGT
ACGGAGAGGAGAATTCAGTGATGTGTCGTTTTAGGGAATAAATTAATAAA
AAATCAAGTTGTTTCGTCGCCGATCAATGCGTAAGCCAATCATCGTACAT
TCGTATAGATAGGGTCCCCAAAGGCCCCAAAGAGGCGGGCATCGTTCACT
CGTAAGGTCGCCAAAGGGACAACTGATGACTCCGTTTGCGTCCCTACTGT
TGCGCGTGGCATCACGTGACAGGGCGTCGGAACGAGCACCCCGCAGCTCA
AGGTCGGCGAAGAAGTATACAAGGGTAAGACCGAGCCGATCGTCGGCACC
ACAATGGCCTTCATCACTCCGAAAGCGGGCTCGGCAGGTGTGTGCAGATA
CAAGCAGTCGCCGTGTGCAGTCCGCAGCAGCTGCCGGCCGCAAGCGGCGA
GGATACTCCTATGATGGCTCATATTGCACCCGTCCGTGTGACAGCACTCA
AAATTTGAGAGTGTGGAAGAGCAGTAGGAGGTATCATGAGCGGATTTGCG
GATGTTTGTGCCGATGCCACGCTTCGTTTGAGAGTTTAAGCCGGCCATGA
GTTTGGGCGTTGGAAAACAAATCACACTCTCCCCTTGTCATCGGGACCCA
GAACAACGTCAAGACTCAGACAAAAGGCAAACCAACACAGCAGCGCACTT
CGTTTTTGCGCCCAACCCAGCAACCAATCAAGCAATCAAACGAGCAGGTG
GTCTTCTGGAATGGTTTTAGAGGGCGGGGGGGAGGATACTTCATCAATTC
GGTGTGCTCTCTCACGCCATTAACAGCAGGCGTACGGTAAATTGTTGTCA
CAAACATGCCGCAGACTGGGGTGTATCACGCATCCCTCGGGGGGCGAATA
TTAAAGCTCGATTTCTCCGCAAGAACGGGGTTGTGATAGTCCCAACACCA
GACGCGTGTTCTGAAAGTTCTCGAAATCCTTCTCCCGGCGCTGTATGGTA
AGTATGCCCTATTCGGCACTGGCACTCTCGTTTGCAGCTGTGAGGACATC
GACCGTTGCAAGCGGACGCGCAAAGCCCAACGCGTCATGCGCCCAGAGGC
AACCTGCCACAACAACCGCGCCCGCAGCGCGCACAAGCGTTCATTCACAC
TTTCGACCGATTCGTTGTCCACCGCAGATGGCTTCTCGTACAAGTACTGC
TACTGCCATGACCTGTACTGAGCCCACCACACGAGGAGCCCCGAAATTCA
TTTCGAGCAAATATCGTAAGAACAACCTAAACTGTTACAAGGCAGCTTCA
AGTGAACACGACACGACCCCGACAACAAGCAATCACGTGACAGCACCACA
GCACACATCTGGCCGGGGCAATATCCTTACGAATCGTTCCGATGCTGGTC
TGGAGTATGGCAGCCCACACACGGGAGAACACACCCACAGCTCAGCACGG
TCAGTGAACAAACTTAAACTTCACAAGCATGCATGATCACCCCCTGCGTA
CGTGGTCGTCCGTGGTCACTCGCGCGCGCATGGTTGTGTTGTCTGTGTGT
TAATCCCCATCTATTCTGGGCGCCAGTCTACACCTGGAGGAATAAGTTGG
GCTCATCAGCCGGGGTCACACAGATAGGAGGTCAAGCGTTTTTGTTGGGG
GGGGGGGGGGGGCTACAGAAAGCAAGGGTGGACGGAAAGCATGATGGTCA
TGTGGCGTGGGACGACTAGCATCGCGATCTGGAACAAAGCAGAGTTGCCC
CTTGTCGCTGTTTGGCGTGGGAGTGCACGCCCGAGGTGTTCTGGGCATGA
GCGATACAGCAGCAGCGATATGGCAGCAGAAGAGCACATTTTTTTTTTGC
TGTGCGCGTGTTCGTCGACTTCAGTCTTTGCGCAAGTTCCACCGCCGTGA
AGTTCTTCCATAAAAATAGAAGTGGTTTTTGCCTCAGTATCTGGGTGAGA
TCCCGGCTGGTACGATCAAATATACTGACAGGTGAAGATCGGCGTCCAGA
ATAGATCGGACGAAAAAACTTCGTATATATACAGTACTAGCGTATTTTTT
GTGCTGTATTATGGATTCAGTCACCTCCCCCCCCCGTCCCCTCGACGTGT
ATCTCCTTCCTTTGGCGCGTAATTTAGGTATCGCTCATCTTCATGCCCGT
TTGTCGTTTTGCTGTTTTACCGTTTCCTCGGCGTCTTGACATCCAGGTCG
GGAGCCTTTAGAACTGGCTTGTTTCAGCACCATGCAGATGACCTTCAGCA
AGCCACCAGGTGAGTTGCCGTCTCCGGCGAGCTTCATAATTCGCTCTCAC
ATCAGCCCTTATACTGCCGTGCAACACTCGTACCACCACGTTAGCAATGA
AGCAGCGCTTATACAGCATGTCAGCACTACCGAGACAAAAGGAGCCAAGA
ACATACGTCTTGGCCGCTCATACTCGTAGGAGTACACCCCATCAGAGTGA
ACGGGGGAGACTAATCGAAAAGGTTTTGGGATTGAGAAGTAGCACTAGTA
GTGCGTTGGAAAGTGGCCGCTTCTCAAGTAACTTTTTTGAGCCGTGTGCG
TTGCTGTCTGGTGGCGTATACTGTTGCTGCAGTGCTGCTGCTGCAGCAGA
ACAGCTAGTGTTCCGCCATCACAACGAACACAAAACGCCTCGCATCACTT
TTCACACAAGCAAACACCGATACTTACGCGCCTCCGACAAAATAGCTGTG
CGCGTGGGGACACGGGCTGCGGTGACCCCAGCAACAATGGGTGCAATATA
TTTACCTCATCACTTCAAGCCCTTGGTCGAAACGATCTGTGCTGAATTTT
TGCCACAATGTTGAAAAACGCGGCCAATATCTTGGACACAATAAAAGCTC
AACCAAAAAGGCAAGCACCGCAGAGGGAAGTGGAGAAAAAAAAAAAAAAA
CTCCTGTGTTGACTTCCCCCTGTGTGACCCCGGTTGGAGCGTCTACCTAC
CCGCAAGGTGTAGAGTGGCGTCCAATGAAAGGGATGACAACACACACACA
ACACTCACAGATATACTTGGTACACCGAGAGCCTCGGAAATCAAACAATG
GCACCCTATCTCATTCGTTTTGTTTTTGTTTTATTCGCACGTACACTCAC
ACCTAAACATCACGACCAAGTCGGTTTGAACTCGAGGCAGTTCGACAACG
AAGTTACACTTCGCTGCGCTCGTGGACTGCTTCTCAATACAACCAGCACG
CGACAGAGCTGACACCGAATCGGAGTTTTTTTTTTTTACAACGCGATTCT
AGGAGTGTGGAGAATAGTGTCCCATGGACAACAAGCATAGCAACAACCCA
GGTAATTAGGGCCGCGAAACCAGTGATTTAGCGGAAGGTGTTTGTGGATT
TTCCTTGACTTTTTTTAGGCTATTACTGAGGAGAAACCGAAATTGTCGAG
CCTCAAGCGAAATCGGCAAATCCTACAAATCGGCCTACATTCACAGCATC
GTCTGTAGAGATTTTCCGAGTTTGGTTTAAAACCCCCGCCCGGGCAATCA
AGCCACCGTTCACCCCCCCTTGCGCCCCCGCACCCCCGCGCCCCGCTCGC
CCCCCCACGCACGCCCCAATGTGTTGGCCCAAACCGCGTGCAGCTGCCAG
GCGGAAGAAACGGAAGTAATGACGCTCAGCGAGCGCGGTGTCGTGTCGTT
GCTGGTGTTGCGGATCGGTGGGGGCGGGGGGGTGCCTTTGACGTCGCGTC
GGCATTTTTTTTGTTATATTAGTCGTGCTTTCCGTGTGTGTCTGTATTTT
GCTTACTTGTGTTTTACGCTGTTGACCTCTCCGAGACTATTTTCGTGTTG
TGGCGCTCGTCTTGGAACCTGCCTGCCGAGTGAGTTTTCCAAAACGTGAT
GAGCAGTTGTGGGGTAGTGGATTCGTTTGTGAGGTTCCGCTGTTTTTGTA
GAGTGTCGTGAAAATCACCTCCCTCAGCACGCCAGGGAGATGGATGGGGT
CAACACATTTCAGAAAATAAAAAATCGGCCGGGCCCCTTCATCAGTGTAT
CATTTAAGGAACCACTGACGAGCGGTAAAAAATTCCTTACCGCAAAATCT
TGTTTTGGATCCAAAGGATATATATCAGTCTTTAATCAAGTCAAAAGAGC
TTAATCGGCTTAACCTTTCACTCCGTCAGCTGTGCAAGTAGTATTCCCTA
AAGTATTTTTATCAGTAGAGGACACCATGGAGCAGCTATGTGTGTGTCGG
CACGGTCAGACATGCTGCTGGGGCTGAGATATCGAAGGCTGCAGCAAAAA
CTCAAAAAGTCCGCAAACTGGGCCTGAACTGGACCGAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1068:57800..64837+

>mRNA_P-littoralis_Contig1068.13.1 ID=mRNA_P-littoralis_Contig1068.13.1|Name=mRNA_P-littoralis_Contig1068.13.1|organism=Pylaiella littoralis U1_48|type=CDS|length=432bp|location=Sequence derived from alignment at P-littoralis_Contig1068:57800..64837+ (Pylaiella littoralis U1_48)
ATGTTGCGCAGAGAAAAAAGAAAACAGCAGCAGGAGAAGGAGGTACCACC
CCAGGGGCAGCAGGATGATGGGGGGCAGAGGGACGAGGAGGAAGAGGAAG
AGGAGGAGTTCCCCGCAGGCATGGACTGCGAGGAGGAATACGACGAGGAG
GATGTGTACGTTATGGTTCAACTGCCGTCTTCTGTTGACGGGGAAGCTCT
GTTGTCGTCATCAGCCGTTACGGTCAAGGGCGTCGGAACGAGCACCCCGC
AGCTCAAGGTCGGCGAAGAAGTATACAAGGGTAAGACCGAGCCGATCGTC
GGCACCACAATGGCCTTCATCACTCCGAAAGCGGGCTCGGCAGGTCGGGA
GCCTTTAGAACTGGCTTGTTTCAGCACCATGCAGATGACCTTCAGCAAGC
CACCAGCTGCCAGGCGGAAGAAACGGAAGTAA
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