mRNA_P-littoralis_Contig1067.11.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1067.11.1
Unique NamemRNA_P-littoralis_Contig1067.11.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1067.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1067contigP-littoralis_Contig1067:5187..5961 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size775
Hectar predicted targeting categoryother localisation
Exons1
Cds size402
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789397.816719-CDS-P-littoralis_Contig1067:5186..55881680789397.816719-CDS-P-littoralis_Contig1067:5186..5588Pylaiella littoralis U1_48CDSP-littoralis_Contig1067 5187..5588 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789397.827428-UTR-P-littoralis_Contig1067:5588..59611680789397.827428-UTR-P-littoralis_Contig1067:5588..5961Pylaiella littoralis U1_48UTRP-littoralis_Contig1067 5589..5961 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1067.11.1prot_P-littoralis_Contig1067.11.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1067 5187..5588 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1067.11.1

>prot_P-littoralis_Contig1067.11.1 ID=prot_P-littoralis_Contig1067.11.1|Name=mRNA_P-littoralis_Contig1067.11.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=134bp
ANSASSREFRASSPSAHAVRCAPDPRAPSFCQGSGTAQGRTEARGVWWCW
CWWWWWWVVTVDAPINGLRVTAAYSTSLWQTHAFQNAHICSVCRAFILLL
YSRRSDHQSRTTAVHVGTNPSVSKHTHLLRVWC*
back to top

mRNA from alignment at P-littoralis_Contig1067:5187..5961+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1067.11.1 ID=mRNA_P-littoralis_Contig1067.11.1|Name=mRNA_P-littoralis_Contig1067.11.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=775bp|location=Sequence derived from alignment at P-littoralis_Contig1067:5187..5961+ (Pylaiella littoralis U1_48)
GCGAATTCAGCGTCTTCCCGAGAATTTCGAGCCTCTTCCCCTTCTGCCCA
TGCGGTGCGGTGTGCACCTGATCCGCGTGCGCCTTCATTTTGCCAGGGAA
GTGGAACCGCACAGGGGCGCACGGAGGCAAGGGGAGTTTGGTGGTGTTGG
TGTTGGTGGTGGTGGTGGTGGGTTGTGACCGTTGACGCGCCGATAAATGG
GTTGCGCGTGACGGCAGCATATTCGACATCCTTGTGGCAAACACACGCTT
TTCAAAACGCCCACATCTGTAGCGTGTGTCGCGCTTTCATACTGCTGCTG
TACAGCAGGCGTAGTGACCATCAATCGCGCACGACGGCAGTACATGTGGG
AACAAACCCAAGTGTTTCAAAGCACACTCATCTGTTGCGTGTGTGGTGTT
GATGGCAGGTAGGTGTGGTGCCGAATTTTCATTACACTCCATGGCACGTG
TGCCCCCAGCGTGCATGCAAAATAACTTGCTGTGCTGAAAATATCATGTG
TGCACACTTCATGCCGCTGCTGTACAGCAGCCGTAGTGACCATCAATAGT
ATATGACGGTAGAATATTTCAGAACGAACACACATGTTTGAAAGCAAGCT
GACGTGTATCGTGTGTGGTGTTGTTGACAGGTGCGTTCTGTTTATGGCAG
CACGAGACAAGTGTTTGATCAGAAATAACGAAGAAACATGTTGTGCCATA
TCATACGAAATCTCCACACATCATTTGAAATGCTGTGTGATGTGTGCACA
GAATTTATCCCGAATTTATACTGCT
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig1067:5187..5961+

>mRNA_P-littoralis_Contig1067.11.1 ID=mRNA_P-littoralis_Contig1067.11.1|Name=mRNA_P-littoralis_Contig1067.11.1|organism=Pylaiella littoralis U1_48|type=CDS|length=402bp|location=Sequence derived from alignment at P-littoralis_Contig1067:5187..5961+ (Pylaiella littoralis U1_48)
GCGAATTCAGCGTCTTCCCGAGAATTTCGAGCCTCTTCCCCTTCTGCCCA
TGCGGTGCGGTGTGCACCTGATCCGCGTGCGCCTTCATTTTGCCAGGGAA
GTGGAACCGCACAGGGGCGCACGGAGGCAAGGGGAGTTTGGTGGTGTTGG
TGTTGGTGGTGGTGGTGGTGGGTTGTGACCGTTGACGCGCCGATAAATGG
GTTGCGCGTGACGGCAGCATATTCGACATCCTTGTGGCAAACACACGCTT
TTCAAAACGCCCACATCTGTAGCGTGTGTCGCGCTTTCATACTGCTGCTG
TACAGCAGGCGTAGTGACCATCAATCGCGCACGACGGCAGTACATGTGGG
AACAAACCCAAGTGTTTCAAAGCACACTCATCTGTTGCGTGTGTGGTGTT
GA
back to top