mRNA_P-littoralis_Contig1067.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1067.1.1
Unique NamemRNA_P-littoralis_Contig1067.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1067.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1067contigP-littoralis_Contig1067:72..773 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size702
Hectar predicted targeting categoryother localisation
Exons1
Cds size426
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789397.7780762-UTR-P-littoralis_Contig1067:71..3471680789397.7780762-UTR-P-littoralis_Contig1067:71..347Pylaiella littoralis U1_48UTRP-littoralis_Contig1067 72..347 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789397.7902906-CDS-P-littoralis_Contig1067:347..7731680789397.7902906-CDS-P-littoralis_Contig1067:347..773Pylaiella littoralis U1_48CDSP-littoralis_Contig1067 348..773 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1067.1.1prot_P-littoralis_Contig1067.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1067 348..773 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1067.1.1

>prot_P-littoralis_Contig1067.1.1 ID=prot_P-littoralis_Contig1067.1.1|Name=mRNA_P-littoralis_Contig1067.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=142bp
METTGRPNVRDVQINRRYGALCAGERVRIRQLKRQALALFNASAHEADEE
QARKLRDLGVVLVGRACRMRHDRTILPPTIRGRTPVIDGITDNEAWTNYR
SRKPELRRLFRAFNFPEWVRPVNRGRYPSESAFLLLIRRMR*
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mRNA from alignment at P-littoralis_Contig1067:72..773+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1067.1.1 ID=mRNA_P-littoralis_Contig1067.1.1|Name=mRNA_P-littoralis_Contig1067.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=702bp|location=Sequence derived from alignment at P-littoralis_Contig1067:72..773+ (Pylaiella littoralis U1_48)
TTCTTGGTTCCCCCGAGGTTTCCCCGAGAGGCTCCGTGACTGCAACAGAA
AGGATTTATTTTCTCAAATTCCGGAAAATCCCGGAAAGAAAGGATATTTG
GAAAGAATATTTGATCTGCCAAGCGAGCCCATGTCGGCACATCACCTGAT
TGGCCAACTAATCCCGGCATCATTCCCGAGCCATGCCGCGGCTGAGGGCA
TGCTGCTACGCTGCCACCCCTCTCTGCTGGCAAGACTACGAGGAGAGCCA
TGCGTAGGCGCTAGCAAGACTAGACGATGGAAACGACAGGACGACCCAAC
GTCAGAGATGTTCAAATCAATCGGCGCTATGGCGCACTTTGCGCTGGTGA
GCGAGTGCGGATCAGGCAGTTGAAGCGGCAGGCGCTGGCCTTGTTCAACG
CTTCGGCACACGAGGCAGATGAGGAGCAGGCACGGAAGTTGAGGGACCTT
GGTGTCGTTCTCGTCGGTCGCGCGTGTCGTATGAGGCACGATAGGACGAT
TCTCCCTCCGACCATCCGGGGGAGGACACCTGTCATCGACGGCATCACCG
ACAACGAAGCGTGGACAAACTACCGGAGCCGAAAGCCGGAGCTACGACGT
TTGTTCCGGGCGTTCAATTTCCCGGAGTGGGTTCGCCCGGTCAATCGCGG
CCGCTACCCCAGCGAGAGCGCCTTCCTCCTTCTCATTAGGCGCATGAGGT
AA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1067:72..773+

>mRNA_P-littoralis_Contig1067.1.1 ID=mRNA_P-littoralis_Contig1067.1.1|Name=mRNA_P-littoralis_Contig1067.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=426bp|location=Sequence derived from alignment at P-littoralis_Contig1067:72..773+ (Pylaiella littoralis U1_48)
ATGGAAACGACAGGACGACCCAACGTCAGAGATGTTCAAATCAATCGGCG
CTATGGCGCACTTTGCGCTGGTGAGCGAGTGCGGATCAGGCAGTTGAAGC
GGCAGGCGCTGGCCTTGTTCAACGCTTCGGCACACGAGGCAGATGAGGAG
CAGGCACGGAAGTTGAGGGACCTTGGTGTCGTTCTCGTCGGTCGCGCGTG
TCGTATGAGGCACGATAGGACGATTCTCCCTCCGACCATCCGGGGGAGGA
CACCTGTCATCGACGGCATCACCGACAACGAAGCGTGGACAAACTACCGG
AGCCGAAAGCCGGAGCTACGACGTTTGTTCCGGGCGTTCAATTTCCCGGA
GTGGGTTCGCCCGGTCAATCGCGGCCGCTACCCCAGCGAGAGCGCCTTCC
TCCTTCTCATTAGGCGCATGAGGTAA
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