mRNA_P-littoralis_Contig1066.37.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1066.37.1
Unique NamemRNA_P-littoralis_Contig1066.37.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1066.37.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1066contigP-littoralis_Contig1066:60508..61039 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size492
Hectar predicted targeting categoryother localisation
Exons2
Cds size444
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789397.3761637-UTR-P-littoralis_Contig1066:60507..605551680789397.3761637-UTR-P-littoralis_Contig1066:60507..60555Pylaiella littoralis U1_48UTRP-littoralis_Contig1066 60508..60555 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789397.3848543-CDS-P-littoralis_Contig1066:60555..608341680789397.3848543-CDS-P-littoralis_Contig1066:60555..60834Pylaiella littoralis U1_48CDSP-littoralis_Contig1066 60556..60834 -
1680789397.3932939-CDS-P-littoralis_Contig1066:60874..610391680789397.3932939-CDS-P-littoralis_Contig1066:60874..61039Pylaiella littoralis U1_48CDSP-littoralis_Contig1066 60875..61039 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1066.37.1prot_P-littoralis_Contig1066.37.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1066 60556..61039 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1066.37.1

>prot_P-littoralis_Contig1066.37.1 ID=prot_P-littoralis_Contig1066.37.1|Name=mRNA_P-littoralis_Contig1066.37.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=148bp
GNITAQSLSPVKVEDKRAAERRWAASGIRYVEEEEPYCCCTVYFINNRPL
RSAEYDKTEWENHRRNEWTGCFVAARAAEDVSFTAAELVRAVRHCCERGK
EERVFRAETNKRLKRCRFGLTCPLWLCTEIVRLGAPLLYQTSTAVEM*
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mRNA from alignment at P-littoralis_Contig1066:60508..61039-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1066.37.1 ID=mRNA_P-littoralis_Contig1066.37.1|Name=mRNA_P-littoralis_Contig1066.37.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=532bp|location=Sequence derived from alignment at P-littoralis_Contig1066:60508..61039- (Pylaiella littoralis U1_48)
GGAAACATAACCGCACAATCACTCTCTCCGGTGAAAGTTGAAGACAAGCG
CGCCGCAGAAAGAAGGTGGGCGGCCTCCGGTATCCGGTACGTCGAGGAGG
AAGAACCCTACTGCTGTTGTACTGTCTATTTTATCAACAATCGTCCTCTT
CGATCTGCTGAATATCTTCGGACTTTGATGTCAGACATTGTACTGTGTAC
TTGACGATAAAACAGAATGGGAAAACCACCGTAGGAATGAGTGGACTGGT
TGCTTTGTTGCCGCACGTGCGGCTGAAGACGTGTCTTTCACTGCGGCTGA
GTTAGTGCGTGCGGTGAGACACTGCTGTGAGAGGGGCAAGGAAGAGCGGG
TTTTCAGGGCTGAAACAAACAAACGGTTGAAGAGGTGCCGGTTCGGGCTC
ACTTGCCCCTTGTGGTTATGCACTGAGATTGTGCGATTGGGTGCACCACT
GCTGTATCAAACCTCCACTGCTGTAGAAATGTAGGTATAATGTCGTACAC
AAAATACGATGGTAGTGTATTCATATGAGATT
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Coding sequence (CDS) from alignment at P-littoralis_Contig1066:60508..61039-

>mRNA_P-littoralis_Contig1066.37.1 ID=mRNA_P-littoralis_Contig1066.37.1|Name=mRNA_P-littoralis_Contig1066.37.1|organism=Pylaiella littoralis U1_48|type=CDS|length=444bp|location=Sequence derived from alignment at P-littoralis_Contig1066:60508..61039- (Pylaiella littoralis U1_48)
GGAAACATAACCGCACAATCACTCTCTCCGGTGAAAGTTGAAGACAAGCG
CGCCGCAGAAAGAAGGTGGGCGGCCTCCGGTATCCGGTACGTCGAGGAGG
AAGAACCCTACTGCTGTTGTACTGTCTATTTTATCAACAATCGTCCTCTT
CGATCTGCTGAATATGATAAAACAGAATGGGAAAACCACCGTAGGAATGA
GTGGACTGGTTGCTTTGTTGCCGCACGTGCGGCTGAAGACGTGTCTTTCA
CTGCGGCTGAGTTAGTGCGTGCGGTGAGACACTGCTGTGAGAGGGGCAAG
GAAGAGCGGGTTTTCAGGGCTGAAACAAACAAACGGTTGAAGAGGTGCCG
GTTCGGGCTCACTTGCCCCTTGTGGTTATGCACTGAGATTGTGCGATTGG
GTGCACCACTGCTGTATCAAACCTCCACTGCTGTAGAAATGTAG
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