mRNA_P-littoralis_Contig1066.29.3 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1066.29.3
Unique NamemRNA_P-littoralis_Contig1066.29.3
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1066.29.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1066contigP-littoralis_Contig1066:52648..53167 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size213
Hectar predicted targeting categoryother localisation
Exons2
Cds size213
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789397.3308172-CDS-P-littoralis_Contig1066:52647..527741680789397.3308172-CDS-P-littoralis_Contig1066:52647..52774Pylaiella littoralis U1_48CDSP-littoralis_Contig1066 52648..52774 -
1680789397.3394156-CDS-P-littoralis_Contig1066:53081..531671680789397.3394156-CDS-P-littoralis_Contig1066:53081..53167Pylaiella littoralis U1_48CDSP-littoralis_Contig1066 53082..53167 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1066.29.3prot_P-littoralis_Contig1066.29.3Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1066 52648..53167 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1066.29.3

>prot_P-littoralis_Contig1066.29.3 ID=prot_P-littoralis_Contig1066.29.3|Name=mRNA_P-littoralis_Contig1066.29.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=71bp
MHGHSLKTTETLASLQCLDATHRVFTDHRCDLPRLPPPSPRAGIKAINNT
LRCTEGSVFLANAEAHARPSR
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mRNA from alignment at P-littoralis_Contig1066:52648..53167-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1066.29.3 ID=mRNA_P-littoralis_Contig1066.29.3|Name=mRNA_P-littoralis_Contig1066.29.3|organism=Pylaiella littoralis U1_48|type=mRNA|length=520bp|location=Sequence derived from alignment at P-littoralis_Contig1066:52648..53167- (Pylaiella littoralis U1_48)
ATGCATGGTCACAGTCTCAAGACTACAGAGACCTTAGCATCCCTGCAGTG
CCTGGACGCCACACACAGGGTTTTCACCGATCACAGGTAGACACTGCTCG
CACTAAGCATGTGGCGCCAATAGGTGGTTGTCGAGTAGCATGAAGAGCGG
GCTGCATCCTGCAAGAAACTACTCGTTGGGCGGGCTCCGGGACTTCATGC
GTGCTCCCTCTCATAAAGGTGACAGCTTTCAATGGCTCCCATGTATTCGT
GGAGTACCCACATGCCTCGAAAACCGCGGTTGCATACTACTGGGATGTAG
CTGCCTTGTGAGTGCTTGACCATGTACGCCCAACGTGGTGCGACCATCCC
CCGTCGCATATCACCTGTCGTCATGAACTCTGTTTTCTGACAGGTGTGAT
CTACCTCGACTACCACCACCATCCCCGAGGGCGGGAATTAAAGCGATCAA
TAACACGCTGAGATGCACCGAAGGGTCGGTATTCTTGGCAAATGCGGAAG
CGCACGCTCGCCCATCAAGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1066:52648..53167-

>mRNA_P-littoralis_Contig1066.29.3 ID=mRNA_P-littoralis_Contig1066.29.3|Name=mRNA_P-littoralis_Contig1066.29.3|organism=Pylaiella littoralis U1_48|type=CDS|length=213bp|location=Sequence derived from alignment at P-littoralis_Contig1066:52648..53167- (Pylaiella littoralis U1_48)
ATGCATGGTCACAGTCTCAAGACTACAGAGACCTTAGCATCCCTGCAGTG
CCTGGACGCCACACACAGGGTTTTCACCGATCACAGGTGTGATCTACCTC
GACTACCACCACCATCCCCGAGGGCGGGAATTAAAGCGATCAATAACACG
CTGAGATGCACCGAAGGGTCGGTATTCTTGGCAAATGCGGAAGCGCACGC
TCGCCCATCAAGA
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