mRNA_P-littoralis_Contig1065.4.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig1065.4.1 vs. uniprot
Match: D7G3U9_ECTSI (ATP-dependent DNA helicase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3U9_ECTSI) HSP 1 Score: 273 bits (697), Expect = 1.610e-81 Identity = 137/178 (76.97%), Postives = 160/178 (89.89%), Query Frame = 1
Query: 1 VAFSIAQEFGLNRKQRLAFYIFANGLLAQHRPDPPEALRLYIGGGAGTGKSHVLKAMKAFIDCPAIAGQIPPGRLLTVAFQGKMASAVGGRTAHSTCSSDGARDG-SLSGDHDDQTSLNESKALAWKNVTTLAIEEVSMIGYKLLVSLHKAACSMFPLHKGKPFGNRLVVMLGDFNQL 531
VA SIAQEFGLNR+QRLAF+IFANGLLAQ RP+PPEALR+YIGGGAGTGKSHVLKA+KAFI+CPAIA ++P GRLLTVA+QGK A++VGG T HS CS+ G+RDG +LSGDHDDQ+SL ++KA+ WK V+ LAIEEVSM+G LLV LHKAACSMFP+HK KPFGNR+VVMLGDF+QL
Sbjct: 1492 VAVSIAQEFGLNRRQRLAFFIFANGLLAQSRPNPPEALRIYIGGGAGTGKSHVLKAIKAFIECPAIAAEVPRGRLLTVAYQGKQAASVGGTTVHSVCST-GSRDGGNLSGDHDDQSSLPDAKAMHWKGVSVLAIEEVSMVGCNLLVQLHKAACSMFPIHKAKPFGNRVVVMLGDFHQL 1668
BLAST of mRNA_P-littoralis_Contig1065.4.1 vs. uniprot
Match: A0A6H5KIB1_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIB1_9PHAE) HSP 1 Score: 244 bits (624), Expect = 1.060e-71 Identity = 125/177 (70.62%), Postives = 140/177 (79.10%), Query Frame = 1
Query: 4 AFSIAQEFGLNRKQRLAFYIFANGLLAQHRPDPPEALRLYIGGGAGTGKSHVLKAMKAFIDCPAIAGQIPPGRLLTVAFQGKMASAVGGRTAHSTCSSDGARDGSLSGDHDDQTSLNESKALAWKNVTTLAIEEVSMIGYKLLVSLHKAACSMFPLHKGKPFGNRLVVMLGDFNQLR 534
AFSIAQEFGLNRKQR AFYIFANGLLAQ RPDPP ALRLYIGGGAGTGK+HVL+A++AF+D P + +P RLL VAFQGK A+AVGG T HS C + DG LSG H+ Q++L SKA WK LAIEE+SMI LLV LH ACSMFPLHKG+PFGNR+VVMLGDFNQLR
Sbjct: 1729 AFSIAQEFGLNRKQRQAFYIFANGLLAQCRPDPPPALRLYIGGGAGTGKTHVLRAIRAFVDSPPVKRLLPRARLLCVAFQGKQAAAVGGTTVHSVCPNTDDSDGCLSGAHEGQSTLPASKAAHWKGDVVLAIEEISMISCNLLVRLHNTACSMFPLHKGQPFGNRVVVMLGDFNQLR 1905
BLAST of mRNA_P-littoralis_Contig1065.4.1 vs. uniprot
Match: A0A6H5KXW4_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXW4_9PHAE) HSP 1 Score: 232 bits (592), Expect = 6.230e-69 Identity = 121/178 (67.98%), Postives = 139/178 (78.09%), Query Frame = 1
Query: 4 AFSIAQEFGLNRKQRLAFYIFANGLLAQHRPDPPEALRLYIGGGAGTGKSHVLKAMKAFIDCPAIAGQIPPGRLLTVAFQGKMASAVGGRTAHSTCSSDGARDGSLSGDHDDQTSLNESKALAWKNVTTLAIEEVSMIGYKLLVSLHKAACSMFPLHKGK-PFGNRLVVMLGDFNQLR 534
AF+IAQEFGLNRKQR AFYIFANGLL+Q RPDPP ALRLYIGGGAGTGK+HVL+A++AF+D P + +P RLL VAFQGK A+AVGG T HS C + G G LSG H+ Q++L S+A W+ LAIEE SMI LLV LH ACSMFPLHKG+ PFGNR+VVMLGDFNQLR
Sbjct: 280 AFTIAQEFGLNRKQRQAFYIFANGLLSQFRPDPPPALRLYIGGGAGTGKTHVLRAIRAFVDSPPVKRLLPRARLLCVAFQGKQAAAVGGTTVHSVCPNTGDSYGCLSGAHEGQSTLPASEAAHWQRDVILAIEESSMISCNLLVRLHNTACSMFPLHKGQQPFGNRVVVMLGDFNQLR 457
BLAST of mRNA_P-littoralis_Contig1065.4.1 vs. uniprot
Match: A0A6H5JN07_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN07_9PHAE) HSP 1 Score: 202 bits (513), Expect = 8.970e-57 Identity = 106/178 (59.55%), Postives = 136/178 (76.40%), Query Frame = 1
Query: 22 EFGLNRKQRLAFYIFANGLLAQHRPDPPEALRLYIGGGAGTGKSHVLKAMKAFIDCPAIAGQIPPGRLLTVAFQGKMASAVGGRTAHSTCSSDGARD--GSLSGDHDDQTSLNESKALAWKNVTTLAIEEVSMIGYKLLVSLHKAACSMFPLHKGKPFGNRL------VVMLGDFNQL 531
EFGLNRKQRLAF++F+NG+LA+ ++LRLYIGGGA +GKSHVLKAMKAFI+CPA+ GQI R+L VAF+G+ A+AVGG T HS C G + GSLS +HDDQ+ + +++A+ WK V LA+EEVSM+G +LLV+L+KAACSMFP+HK KPFGN +V+ G FNQL
Sbjct: 1399 EFGLNRKQRLAFFVFSNGMLAKKVSPGSDSLRLYIGGGAKSGKSHVLKAMKAFIECPALVGQIEDSRMLAVAFRGQQAAAVGGTTIHSVCQV-GRKTFRGSLSRNHDDQSPMKDTQAIHWKGVNMLAVEEVSMVGCELLVALNKAACSMFPMHKDKPFGNLQPFGNLPLVLCGGFNQL 1575
BLAST of mRNA_P-littoralis_Contig1065.4.1 vs. uniprot
Match: A0A6H5L0L4_9PHAE (Helitron_like_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0L4_9PHAE) HSP 1 Score: 168 bits (426), Expect = 4.400e-45 Identity = 84/88 (95.45%), Postives = 86/88 (97.73%), Query Frame = 1
Query: 1 VAFSIAQEFGLNRKQRLAFYIFANGLLAQHRPDPPEALRLYIGGGAGTGKSHVLKAMKAFIDCPAIAGQIPPGRLLTVAFQGKMASAV 264
VA SIAQEFGLNRKQRLAFYIFANGLLAQ+RPDPPEALRLYIGGGAGTGKSHVLKAMKAFIDCP +AGQIPPGRLLTVAFQGKMASAV
Sbjct: 1492 VAVSIAQEFGLNRKQRLAFYIFANGLLAQNRPDPPEALRLYIGGGAGTGKSHVLKAMKAFIDCPTLAGQIPPGRLLTVAFQGKMASAV 1579
BLAST of mRNA_P-littoralis_Contig1065.4.1 vs. uniprot
Match: A0A6H5JT57_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT57_9PHAE) HSP 1 Score: 165 bits (418), Expect = 5.100e-44 Identity = 93/178 (52.25%), Postives = 115/178 (64.61%), Query Frame = 1
Query: 13 IAQEFGLNRKQRLAFYIFANGLLAQHRPDPPEALRLYIGGGAGTGKSHVLKAMKAFIDCPAIAGQIPPGRLLTVAFQGKMASAVGGRTAHSTC-----SSDGARDGSLSGDHDDQTSLNESKALAWKNVTTLAIEEVSMIGYKLLVSLHKAACSMFPLHKGKPFGNRLVVMLGDFNQL 531
IA EFGLNRKQRLAF+IF +A+ P ALRL++ GGAG+GKS+VL+A+ A IDCPA+ G + PG LLTVAFQGK A+ VGG T HS ++DGA D ++ QT L+E+KA W + LAIEEVSM+ L SLHKAA S+ P PF + V GD NQL
Sbjct: 750 IADEFGLNRKQRLAFFIFGAAWIARDGVPTPNALRLHVSGGAGSGKSYVLRAIVALIDCPALKGVVQPGGLLTVAFQGKAAANVGGNTVHSVADVPRKNNDGAMDNTIG-----QTGLSEAKAARWTHAAALAIEEVSMVSCLQLGSLHKAAVSVRPSSASLPFAGMIYVTFGDLNQL 922
BLAST of mRNA_P-littoralis_Contig1065.4.1 vs. uniprot
Match: A0A6H5KPD9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPD9_9PHAE) HSP 1 Score: 124 bits (311), Expect = 6.160e-33 Identity = 66/131 (50.38%), Postives = 86/131 (65.65%), Query Frame = 1
Query: 13 IAQEFGLNRKQRLAFYIFANGLLAQHRPDPPEALRLYIGGGAGTGKSHVLKAMKAFIDCPAIAGQIPPGRLLTVAFQGKMASAVGGRTAHSTCSSDGARDGSLSGDHDDQTSLNESKALAWKNVTTLAIEE 405
IA E GLNRKQRLAF++F + + +ALRL++ GGAG+G S VL+A+KA IDCPA+ G + PGRLLT+AFQGK A+ VGG T HS G + Q+ L+++K + WKNV LAIEE
Sbjct: 31 IADELGLNRKQRLAFFLFGAAWIRRTASPTADALRLHVSGGAGSGNSCVLRAIKALIDCPALKGVVRPGRLLTLAFQGKQAACVGGNTVHSATDVPRTDKGGTLDNTAGQSGLSDAKVVFWKNVAVLAIEE 161
BLAST of mRNA_P-littoralis_Contig1065.4.1 vs. uniprot
Match: A0A6H5J5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5A5_9PHAE) HSP 1 Score: 78.6 bits (192), Expect = 1.070e-13 Identity = 43/61 (70.49%), Postives = 47/61 (77.05%), Query Frame = 1
Query: 1 VAFSIAQEFGLNRKQRLAFYIFANGLLAQHRPDPPEALRLYIGGGAGTGKSHVLKAMKAFI 183
VAF IAQEFGLNR+QR AFYIFAN + A+ R P AL LYIGGGAG KS VLKA+K FI
Sbjct: 1123 VAFRIAQEFGLNREQRFAFYIFANCMFAKKRSHSP-ALILYIGGGAGAEKSWVLKAIKTFI 1182
BLAST of mRNA_P-littoralis_Contig1065.4.1 vs. uniprot
Match: A0A8H5BD74_9AGAR (ATP-dependent DNA helicase n=1 Tax=Tulosesus angulatus TaxID=980116 RepID=A0A8H5BD74_9AGAR) HSP 1 Score: 77.4 bits (189), Expect = 2.780e-13 Identity = 65/179 (36.31%), Postives = 88/179 (49.16%), Query Frame = 1
Query: 10 SIAQEFGLNRKQRLAFYIFANGLLAQHRPDPPEALRLYIGGGAGTGKSHVLKAMKAFIDCPAIAGQIPPG---RLLTVAFQGKMASAVGGRTAHSTCSSDGARDGSLSGDHDDQTSLNESKALAWKNVTTLAIEEVSMIGYKLLVSLHKAACSMFPLHKGK--PFGNRLVVMLGDFNQL 531
+I Q+F LN +Q AF I AN L + RPD P LR+++GG GTGKS V+ A+K F I G RL +F G A + G T HS + + S +G + L W+ V L ++EVSMIG +LL+ + A KG PFG ++ GDF QL
Sbjct: 1268 NIVQQFTLNSEQARAFQIIANHALVR-RPDHP--LRMFLGGAGGTGKSRVIDALKEFF--------IQRGERERLRLASFTGVAARNISGSTLHSALNL--VQRKSKAGSDKSKRDL----IALWEGVDFLFVDEVSMIGCRLLLEISNALVDA----KGNTAPFGGLNIIFAGDFAQL 1425
BLAST of mRNA_P-littoralis_Contig1065.4.1 vs. uniprot
Match: A0A8H5CJ70_9AGAR (ATP-dependent DNA helicase n=1 Tax=Tulosesus angulatus TaxID=980116 RepID=A0A8H5CJ70_9AGAR) HSP 1 Score: 75.5 bits (184), Expect = 1.130e-12 Identity = 64/175 (36.57%), Postives = 84/175 (48.00%), Query Frame = 1
Query: 13 IAQEFGLNRKQRLAFYIFANGLLAQHRPDPPEALRLYIGGGAGTGKSHVLKAMKAFIDCPAIAGQIPPGRLLTVAFQGKMASAVGGRTAHSTCSSDGARDGSLSGDHDDQTSLNESKALAWKNVTTLAIEEVSMIGYKLLVSLHKAACSMFPLHKGK--PFGNRLVVMLGDFNQL 531
+ +EF LN +Q AF I A L + P + LR+++GG GTGKS VL A+K F GRL +F G AS + G T HS S + S +G + +L W+ V L I+EVSMIG KLL + A KG PFG ++ GDF QL
Sbjct: 111 VIKEFTLNTEQGRAFKIIAGQALGRI---PVQPLRMFLGGAGGTGKSRVLDALKEFFTKRG-----ERGRLRLASFTGVAASNITGSTLHSALSL--VQRKSKAGADKSKRNL----IAMWEGVDFLFIDEVSMIGCKLLFQISNALVDA----KGNTAPFGGINIIFAGDFAQL 267 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1065.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1065.4.1 >prot_P-littoralis_Contig1065.4.1 ID=prot_P-littoralis_Contig1065.4.1|Name=mRNA_P-littoralis_Contig1065.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=179bp VAFSIAQEFGLNRKQRLAFYIFANGLLAQHRPDPPEALRLYIGGGAGTGKback to top mRNA from alignment at P-littoralis_Contig1065:8006..8542+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1065.4.1 ID=mRNA_P-littoralis_Contig1065.4.1|Name=mRNA_P-littoralis_Contig1065.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=537bp|location=Sequence derived from alignment at P-littoralis_Contig1065:8006..8542+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1065:8006..8542+ >mRNA_P-littoralis_Contig1065.4.1 ID=mRNA_P-littoralis_Contig1065.4.1|Name=mRNA_P-littoralis_Contig1065.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=537bp|location=Sequence derived from alignment at P-littoralis_Contig1065:8006..8542+ (Pylaiella littoralis U1_48)back to top |