mRNA_P-littoralis_Contig1065.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1065.4.1
Unique NamemRNA_P-littoralis_Contig1065.4.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1065.4.1 vs. uniprot
Match: D7G3U9_ECTSI (ATP-dependent DNA helicase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3U9_ECTSI)

HSP 1 Score: 273 bits (697), Expect = 1.610e-81
Identity = 137/178 (76.97%), Postives = 160/178 (89.89%), Query Frame = 1
Query:    1 VAFSIAQEFGLNRKQRLAFYIFANGLLAQHRPDPPEALRLYIGGGAGTGKSHVLKAMKAFIDCPAIAGQIPPGRLLTVAFQGKMASAVGGRTAHSTCSSDGARDG-SLSGDHDDQTSLNESKALAWKNVTTLAIEEVSMIGYKLLVSLHKAACSMFPLHKGKPFGNRLVVMLGDFNQL 531
            VA SIAQEFGLNR+QRLAF+IFANGLLAQ RP+PPEALR+YIGGGAGTGKSHVLKA+KAFI+CPAIA ++P GRLLTVA+QGK A++VGG T HS CS+ G+RDG +LSGDHDDQ+SL ++KA+ WK V+ LAIEEVSM+G  LLV LHKAACSMFP+HK KPFGNR+VVMLGDF+QL
Sbjct: 1492 VAVSIAQEFGLNRRQRLAFFIFANGLLAQSRPNPPEALRIYIGGGAGTGKSHVLKAIKAFIECPAIAAEVPRGRLLTVAYQGKQAASVGGTTVHSVCST-GSRDGGNLSGDHDDQSSLPDAKAMHWKGVSVLAIEEVSMVGCNLLVQLHKAACSMFPIHKAKPFGNRVVVMLGDFHQL 1668          
BLAST of mRNA_P-littoralis_Contig1065.4.1 vs. uniprot
Match: A0A6H5KIB1_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIB1_9PHAE)

HSP 1 Score: 244 bits (624), Expect = 1.060e-71
Identity = 125/177 (70.62%), Postives = 140/177 (79.10%), Query Frame = 1
Query:    4 AFSIAQEFGLNRKQRLAFYIFANGLLAQHRPDPPEALRLYIGGGAGTGKSHVLKAMKAFIDCPAIAGQIPPGRLLTVAFQGKMASAVGGRTAHSTCSSDGARDGSLSGDHDDQTSLNESKALAWKNVTTLAIEEVSMIGYKLLVSLHKAACSMFPLHKGKPFGNRLVVMLGDFNQLR 534
            AFSIAQEFGLNRKQR AFYIFANGLLAQ RPDPP ALRLYIGGGAGTGK+HVL+A++AF+D P +   +P  RLL VAFQGK A+AVGG T HS C +    DG LSG H+ Q++L  SKA  WK    LAIEE+SMI   LLV LH  ACSMFPLHKG+PFGNR+VVMLGDFNQLR
Sbjct: 1729 AFSIAQEFGLNRKQRQAFYIFANGLLAQCRPDPPPALRLYIGGGAGTGKTHVLRAIRAFVDSPPVKRLLPRARLLCVAFQGKQAAAVGGTTVHSVCPNTDDSDGCLSGAHEGQSTLPASKAAHWKGDVVLAIEEISMISCNLLVRLHNTACSMFPLHKGQPFGNRVVVMLGDFNQLR 1905          
BLAST of mRNA_P-littoralis_Contig1065.4.1 vs. uniprot
Match: A0A6H5KXW4_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXW4_9PHAE)

HSP 1 Score: 232 bits (592), Expect = 6.230e-69
Identity = 121/178 (67.98%), Postives = 139/178 (78.09%), Query Frame = 1
Query:    4 AFSIAQEFGLNRKQRLAFYIFANGLLAQHRPDPPEALRLYIGGGAGTGKSHVLKAMKAFIDCPAIAGQIPPGRLLTVAFQGKMASAVGGRTAHSTCSSDGARDGSLSGDHDDQTSLNESKALAWKNVTTLAIEEVSMIGYKLLVSLHKAACSMFPLHKGK-PFGNRLVVMLGDFNQLR 534
            AF+IAQEFGLNRKQR AFYIFANGLL+Q RPDPP ALRLYIGGGAGTGK+HVL+A++AF+D P +   +P  RLL VAFQGK A+AVGG T HS C + G   G LSG H+ Q++L  S+A  W+    LAIEE SMI   LLV LH  ACSMFPLHKG+ PFGNR+VVMLGDFNQLR
Sbjct:  280 AFTIAQEFGLNRKQRQAFYIFANGLLSQFRPDPPPALRLYIGGGAGTGKTHVLRAIRAFVDSPPVKRLLPRARLLCVAFQGKQAAAVGGTTVHSVCPNTGDSYGCLSGAHEGQSTLPASEAAHWQRDVILAIEESSMISCNLLVRLHNTACSMFPLHKGQQPFGNRVVVMLGDFNQLR 457          
BLAST of mRNA_P-littoralis_Contig1065.4.1 vs. uniprot
Match: A0A6H5JN07_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN07_9PHAE)

HSP 1 Score: 202 bits (513), Expect = 8.970e-57
Identity = 106/178 (59.55%), Postives = 136/178 (76.40%), Query Frame = 1
Query:   22 EFGLNRKQRLAFYIFANGLLAQHRPDPPEALRLYIGGGAGTGKSHVLKAMKAFIDCPAIAGQIPPGRLLTVAFQGKMASAVGGRTAHSTCSSDGARD--GSLSGDHDDQTSLNESKALAWKNVTTLAIEEVSMIGYKLLVSLHKAACSMFPLHKGKPFGNRL------VVMLGDFNQL 531
            EFGLNRKQRLAF++F+NG+LA+      ++LRLYIGGGA +GKSHVLKAMKAFI+CPA+ GQI   R+L VAF+G+ A+AVGG T HS C   G +   GSLS +HDDQ+ + +++A+ WK V  LA+EEVSM+G +LLV+L+KAACSMFP+HK KPFGN        +V+ G FNQL
Sbjct: 1399 EFGLNRKQRLAFFVFSNGMLAKKVSPGSDSLRLYIGGGAKSGKSHVLKAMKAFIECPALVGQIEDSRMLAVAFRGQQAAAVGGTTIHSVCQV-GRKTFRGSLSRNHDDQSPMKDTQAIHWKGVNMLAVEEVSMVGCELLVALNKAACSMFPMHKDKPFGNLQPFGNLPLVLCGGFNQL 1575          
BLAST of mRNA_P-littoralis_Contig1065.4.1 vs. uniprot
Match: A0A6H5L0L4_9PHAE (Helitron_like_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0L4_9PHAE)

HSP 1 Score: 168 bits (426), Expect = 4.400e-45
Identity = 84/88 (95.45%), Postives = 86/88 (97.73%), Query Frame = 1
Query:    1 VAFSIAQEFGLNRKQRLAFYIFANGLLAQHRPDPPEALRLYIGGGAGTGKSHVLKAMKAFIDCPAIAGQIPPGRLLTVAFQGKMASAV 264
            VA SIAQEFGLNRKQRLAFYIFANGLLAQ+RPDPPEALRLYIGGGAGTGKSHVLKAMKAFIDCP +AGQIPPGRLLTVAFQGKMASAV
Sbjct: 1492 VAVSIAQEFGLNRKQRLAFYIFANGLLAQNRPDPPEALRLYIGGGAGTGKSHVLKAMKAFIDCPTLAGQIPPGRLLTVAFQGKMASAV 1579          
BLAST of mRNA_P-littoralis_Contig1065.4.1 vs. uniprot
Match: A0A6H5JT57_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT57_9PHAE)

HSP 1 Score: 165 bits (418), Expect = 5.100e-44
Identity = 93/178 (52.25%), Postives = 115/178 (64.61%), Query Frame = 1
Query:   13 IAQEFGLNRKQRLAFYIFANGLLAQHRPDPPEALRLYIGGGAGTGKSHVLKAMKAFIDCPAIAGQIPPGRLLTVAFQGKMASAVGGRTAHSTC-----SSDGARDGSLSGDHDDQTSLNESKALAWKNVTTLAIEEVSMIGYKLLVSLHKAACSMFPLHKGKPFGNRLVVMLGDFNQL 531
            IA EFGLNRKQRLAF+IF    +A+     P ALRL++ GGAG+GKS+VL+A+ A IDCPA+ G + PG LLTVAFQGK A+ VGG T HS       ++DGA D ++      QT L+E+KA  W +   LAIEEVSM+    L SLHKAA S+ P     PF   + V  GD NQL
Sbjct:  750 IADEFGLNRKQRLAFFIFGAAWIARDGVPTPNALRLHVSGGAGSGKSYVLRAIVALIDCPALKGVVQPGGLLTVAFQGKAAANVGGNTVHSVADVPRKNNDGAMDNTIG-----QTGLSEAKAARWTHAAALAIEEVSMVSCLQLGSLHKAAVSVRPSSASLPFAGMIYVTFGDLNQL 922          
BLAST of mRNA_P-littoralis_Contig1065.4.1 vs. uniprot
Match: A0A6H5KPD9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPD9_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 6.160e-33
Identity = 66/131 (50.38%), Postives = 86/131 (65.65%), Query Frame = 1
Query:   13 IAQEFGLNRKQRLAFYIFANGLLAQHRPDPPEALRLYIGGGAGTGKSHVLKAMKAFIDCPAIAGQIPPGRLLTVAFQGKMASAVGGRTAHSTCSSDGARDGSLSGDHDDQTSLNESKALAWKNVTTLAIEE 405
            IA E GLNRKQRLAF++F    + +      +ALRL++ GGAG+G S VL+A+KA IDCPA+ G + PGRLLT+AFQGK A+ VGG T HS         G    +   Q+ L+++K + WKNV  LAIEE
Sbjct:   31 IADELGLNRKQRLAFFLFGAAWIRRTASPTADALRLHVSGGAGSGNSCVLRAIKALIDCPALKGVVRPGRLLTLAFQGKQAACVGGNTVHSATDVPRTDKGGTLDNTAGQSGLSDAKVVFWKNVAVLAIEE 161          
BLAST of mRNA_P-littoralis_Contig1065.4.1 vs. uniprot
Match: A0A6H5J5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5A5_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 1.070e-13
Identity = 43/61 (70.49%), Postives = 47/61 (77.05%), Query Frame = 1
Query:    1 VAFSIAQEFGLNRKQRLAFYIFANGLLAQHRPDPPEALRLYIGGGAGTGKSHVLKAMKAFI 183
            VAF IAQEFGLNR+QR AFYIFAN + A+ R   P AL LYIGGGAG  KS VLKA+K FI
Sbjct: 1123 VAFRIAQEFGLNREQRFAFYIFANCMFAKKRSHSP-ALILYIGGGAGAEKSWVLKAIKTFI 1182          
BLAST of mRNA_P-littoralis_Contig1065.4.1 vs. uniprot
Match: A0A8H5BD74_9AGAR (ATP-dependent DNA helicase n=1 Tax=Tulosesus angulatus TaxID=980116 RepID=A0A8H5BD74_9AGAR)

HSP 1 Score: 77.4 bits (189), Expect = 2.780e-13
Identity = 65/179 (36.31%), Postives = 88/179 (49.16%), Query Frame = 1
Query:   10 SIAQEFGLNRKQRLAFYIFANGLLAQHRPDPPEALRLYIGGGAGTGKSHVLKAMKAFIDCPAIAGQIPPG---RLLTVAFQGKMASAVGGRTAHSTCSSDGARDGSLSGDHDDQTSLNESKALAWKNVTTLAIEEVSMIGYKLLVSLHKAACSMFPLHKGK--PFGNRLVVMLGDFNQL 531
            +I Q+F LN +Q  AF I AN  L + RPD P  LR+++GG  GTGKS V+ A+K F         I  G   RL   +F G  A  + G T HS  +    +  S +G    +  L       W+ V  L ++EVSMIG +LL+ +  A        KG   PFG   ++  GDF QL
Sbjct: 1268 NIVQQFTLNSEQARAFQIIANHALVR-RPDHP--LRMFLGGAGGTGKSRVIDALKEFF--------IQRGERERLRLASFTGVAARNISGSTLHSALNL--VQRKSKAGSDKSKRDL----IALWEGVDFLFVDEVSMIGCRLLLEISNALVDA----KGNTAPFGGLNIIFAGDFAQL 1425          
BLAST of mRNA_P-littoralis_Contig1065.4.1 vs. uniprot
Match: A0A8H5CJ70_9AGAR (ATP-dependent DNA helicase n=1 Tax=Tulosesus angulatus TaxID=980116 RepID=A0A8H5CJ70_9AGAR)

HSP 1 Score: 75.5 bits (184), Expect = 1.130e-12
Identity = 64/175 (36.57%), Postives = 84/175 (48.00%), Query Frame = 1
Query:   13 IAQEFGLNRKQRLAFYIFANGLLAQHRPDPPEALRLYIGGGAGTGKSHVLKAMKAFIDCPAIAGQIPPGRLLTVAFQGKMASAVGGRTAHSTCSSDGARDGSLSGDHDDQTSLNESKALAWKNVTTLAIEEVSMIGYKLLVSLHKAACSMFPLHKGK--PFGNRLVVMLGDFNQL 531
            + +EF LN +Q  AF I A   L +    P + LR+++GG  GTGKS VL A+K F            GRL   +F G  AS + G T HS  S    +  S +G    + +L       W+ V  L I+EVSMIG KLL  +  A        KG   PFG   ++  GDF QL
Sbjct:  111 VIKEFTLNTEQGRAFKIIAGQALGRI---PVQPLRMFLGGAGGTGKSRVLDALKEFFTKRG-----ERGRLRLASFTGVAASNITGSTLHSALSL--VQRKSKAGADKSKRNL----IAMWEGVDFLFIDEVSMIGCKLLFQISNALVDA----KGNTAPFGGINIIFAGDFAQL 267          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1065.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3U9_ECTSI1.610e-8176.97ATP-dependent DNA helicase n=2 Tax=Ectocarpus sili... [more]
A0A6H5KIB1_9PHAE1.060e-7170.62ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5KXW4_9PHAE6.230e-6967.98ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5JN07_9PHAE8.970e-5759.55ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5L0L4_9PHAE4.400e-4595.45Helitron_like_N domain-containing protein n=1 Tax=... [more]
A0A6H5JT57_9PHAE5.100e-4452.25ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5KPD9_9PHAE6.160e-3350.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J5A5_9PHAE1.070e-1370.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A8H5BD74_9AGAR2.780e-1336.31ATP-dependent DNA helicase n=1 Tax=Tulosesus angul... [more]
A0A8H5CJ70_9AGAR1.130e-1236.57ATP-dependent DNA helicase n=1 Tax=Tulosesus angul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1065contigP-littoralis_Contig1065:8006..8542 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7G3U9
PFAMsHelitron_like_N,PIF1
Model size537
Max annot lvl2759|Eukaryota
KEGG koko:K15255,ko:K20647
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.63e-82
EggNOG OGsCOG0507@1|root,KOG0987@2759|Eukaryota
EC3.6.4.12
DescriptionG-quadruplex DNA unwinding
Cds size537
COG categoryL
BRITEko00000,ko01000,ko03029,ko03032,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789396.8742852-CDS-P-littoralis_Contig1065:8005..85421680789396.8742852-CDS-P-littoralis_Contig1065:8005..8542Pylaiella littoralis U1_48CDSP-littoralis_Contig1065 8006..8542 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1065.4.1prot_P-littoralis_Contig1065.4.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1065 8006..8542 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1065.4.1

>prot_P-littoralis_Contig1065.4.1 ID=prot_P-littoralis_Contig1065.4.1|Name=mRNA_P-littoralis_Contig1065.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=179bp
VAFSIAQEFGLNRKQRLAFYIFANGLLAQHRPDPPEALRLYIGGGAGTGK
SHVLKAMKAFIDCPAIAGQIPPGRLLTVAFQGKMASAVGGRTAHSTCSSD
GARDGSLSGDHDDQTSLNESKALAWKNVTTLAIEEVSMIGYKLLVSLHKA
ACSMFPLHKGKPFGNRLVVMLGDFNQLR*
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mRNA from alignment at P-littoralis_Contig1065:8006..8542+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1065.4.1 ID=mRNA_P-littoralis_Contig1065.4.1|Name=mRNA_P-littoralis_Contig1065.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=537bp|location=Sequence derived from alignment at P-littoralis_Contig1065:8006..8542+ (Pylaiella littoralis U1_48)
GTTGCCTTCAGCATCGCACAGGAATTTGGCCTCAACCGAAAGCAGCGACT AGCTTTTTACATCTTCGCCAACGGTCTCCTGGCTCAGCACCGCCCAGACC CTCCTGAAGCACTTCGGCTTTACATCGGTGGCGGAGCCGGGACAGGAAAG TCGCACGTGCTCAAGGCCATGAAAGCTTTCATCGACTGTCCGGCTATTGC TGGCCAAATCCCACCAGGTCGTCTATTGACCGTTGCATTTCAAGGGAAAA TGGCCTCGGCTGTGGGAGGACGAACTGCACACTCCACTTGCTCCAGCGAC GGAGCACGCGACGGCAGCTTATCCGGCGACCACGATGATCAAACTTCGCT TAACGAGAGCAAAGCACTAGCGTGGAAGAACGTCACCACCCTGGCTATTG AAGAGGTCAGCATGATCGGCTACAAACTTTTAGTTAGTCTTCACAAGGCC GCGTGCTCCATGTTCCCGCTTCACAAGGGGAAACCTTTCGGCAACCGTCT TGTCGTCATGCTCGGTGACTTCAACCAACTGAGGTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1065:8006..8542+

>mRNA_P-littoralis_Contig1065.4.1 ID=mRNA_P-littoralis_Contig1065.4.1|Name=mRNA_P-littoralis_Contig1065.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=537bp|location=Sequence derived from alignment at P-littoralis_Contig1065:8006..8542+ (Pylaiella littoralis U1_48)
GTTGCCTTCAGCATCGCACAGGAATTTGGCCTCAACCGAAAGCAGCGACT
AGCTTTTTACATCTTCGCCAACGGTCTCCTGGCTCAGCACCGCCCAGACC
CTCCTGAAGCACTTCGGCTTTACATCGGTGGCGGAGCCGGGACAGGAAAG
TCGCACGTGCTCAAGGCCATGAAAGCTTTCATCGACTGTCCGGCTATTGC
TGGCCAAATCCCACCAGGTCGTCTATTGACCGTTGCATTTCAAGGGAAAA
TGGCCTCGGCTGTGGGAGGACGAACTGCACACTCCACTTGCTCCAGCGAC
GGAGCACGCGACGGCAGCTTATCCGGCGACCACGATGATCAAACTTCGCT
TAACGAGAGCAAAGCACTAGCGTGGAAGAACGTCACCACCCTGGCTATTG
AAGAGGTCAGCATGATCGGCTACAAACTTTTAGTTAGTCTTCACAAGGCC
GCGTGCTCCATGTTCCCGCTTCACAAGGGGAAACCTTTCGGCAACCGTCT
TGTCGTCATGCTCGGTGACTTCAACCAACTGAGGTGA
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