mRNA_P-littoralis_Contig1065.19.10 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1065.19.10
Unique NamemRNA_P-littoralis_Contig1065.19.10
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1065.19.10 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1065contigP-littoralis_Contig1065:60450..62009 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size268
Hectar predicted targeting categoryother localisation
Exons2
Cds size264
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789396.6640863-CDS-P-littoralis_Contig1065:60451..605301680789396.6640863-CDS-P-littoralis_Contig1065:60451..60530Pylaiella littoralis U1_48CDSP-littoralis_Contig1065 60452..60530 -
1680789396.6782-CDS-P-littoralis_Contig1065:61824..620091680789396.6782-CDS-P-littoralis_Contig1065:61824..62009Pylaiella littoralis U1_48CDSP-littoralis_Contig1065 61825..62009 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1065.19.10prot_P-littoralis_Contig1065.19.10Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1065 60452..62009 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1065.19.10

>prot_P-littoralis_Contig1065.19.10 ID=prot_P-littoralis_Contig1065.19.10|Name=mRNA_P-littoralis_Contig1065.19.10|organism=Pylaiella littoralis U1_48|type=polypeptide|length=88bp
AHITRTSHTTTSTPHTATSTRRGPEWDKRLWHSSSSSSSRAAHGDGASLV
LLCVRGERSTDSGNTHGTFHGVLWCNALPDGPCVRITP
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mRNA from alignment at P-littoralis_Contig1065:60450..62009-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1065.19.10 ID=mRNA_P-littoralis_Contig1065.19.10|Name=mRNA_P-littoralis_Contig1065.19.10|organism=Pylaiella littoralis U1_48|type=mRNA|length=1560bp|location=Sequence derived from alignment at P-littoralis_Contig1065:60450..62009- (Pylaiella littoralis U1_48)
GCACACATAACACGTACATCTCACACAACGACATCTACACCTCACACAGC
GACATCTACCCGGAGAGGGCCAGAGTGGGACAAGAGACTTTGGCACAGCA
GTAGTAGTAGTAGTAGTCGTGCGGCTCATGGTGACGGAGCGAGCCTAGTG
CTGCTGTGTGTGAGGGGGGAGAGGAGCACAGACAGGTACTCCTGCTGCTG
TAGTGAGATGGCGGCAGCGATACATACACTCTCTTATTGGTTGCTTGTGG
TAGAACGTCTCACCTGCCCCACCAAGCACCAAGCAAGGAGGTGATCTCTA
CTTACTTGCTTGCTTGTGTCTCCTGCCAGCACCCCACTTTCTTATCCAGC
CTCTACCCTGCCAGCACCACACGTTTTTGTTATCCAGCGTCCACCTACCA
GCTACCTGCTGTGCTGGCTGTGCTGTGTGCTCTGCTACTACCACCACTGC
AGTACTGATGTGTGTCCTTTTTACTGTGTACCTGGTATTGATCTATCTTA
CACATCATTCATGCGTCTCAACACACATACACACATCCATCCATCCAATA
CATACATCACCGGTCGCCCCGGTGGACTAGTCGTCCCCTCGTTAACCACT
AGATGCAGAGGAACGGGGGTTCGATTCCCGGTGAATGTGTTCTTCTGCTA
CTTTGAAAGCGGCTATGCTGTTAGTAAAACCAGATTTGGCTTCGCCGACG
AGGGTAGGGACCGCGGATCCCTGCTCGCGAGAAAACATCTCACGCATGTA
CCGCAGAAGGAAGGTGGGGGTAACTCCTCCTGTGTTGACCTTCCTCCTGT
GTGACCCTGTCGATGGGCCTAGCCTGTAGTTTGAACCGCAGGGTGCAGAC
TAGTGTGCCAGAGAATATGGGATGACAACAAACATACATACATACACACA
TACATACATTGTACATACATACAGCTAATGTGAGAATCAACAACAACAAC
AACATACATTCATGCAGCAGCCCCATCTCGACGTACTCCATGTGCGAACC
ACAACCTGCCCAGAAACACTCACGGAAGGTTCCACTCTGGGTGTTGTGGT
GTTTGAGGATTACTCCGATAGTACATGTGACGGAGCGAGGCTAGTGCTGT
GTATGATGGGGGAAAGGAGCACACCACACTTTGTTATCCAGCGTCCAGCT
CCCAGCTACCTGCTGTGCTGGATGTGCTGTGTTCTTTGCTACTACCACCG
GATAAGTACTGCTGTGTGTACTTTTTTTGCTGTGTGTTGTTCTATCATCT
TACTCATCATGCGTCTCACACAGCATTAGTACAGCAGTATACACACAACC
TCGTCGGACCAGAGATATATATCTCGATCGACTGGGAGAGAAGCGGAGAG
ATGGGCGTGCACATCTTGTTCCTCCGACGTACTGGTCGTACGAACCACAA
CATGGGCGTGCTAAGAAGACACCTCGCACCACATCTTGTTTCTCCGACGT
ACTCGACGTACGAACCGCCACATGCACAGCGGGAACACTCACGGAACGTT
CCACGGGGTGTTGTGGTGTAACGCTTTACCAGACGGGCCGTGTGTGAGGA
TTACTCCGGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1065:60450..62009-

>mRNA_P-littoralis_Contig1065.19.10 ID=mRNA_P-littoralis_Contig1065.19.10|Name=mRNA_P-littoralis_Contig1065.19.10|organism=Pylaiella littoralis U1_48|type=CDS|length=264bp|location=Sequence derived from alignment at P-littoralis_Contig1065:60450..62009- (Pylaiella littoralis U1_48)
GCACACATAACACGTACATCTCACACAACGACATCTACACCTCACACAGC
GACATCTACCCGGAGAGGGCCAGAGTGGGACAAGAGACTTTGGCACAGCA
GTAGTAGTAGTAGTAGTCGTGCGGCTCATGGTGACGGAGCGAGCCTAGTG
CTGCTGTGTGTGAGGGGGGAGAGGAGCACAGACAGCGGGAACACTCACGG
AACGTTCCACGGGGTGTTGTGGTGTAACGCTTTACCAGACGGGCCGTGTG
TGAGGATTACTCCG
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