mRNA_P-littoralis_Contig1065.13.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1065.13.1
Unique NamemRNA_P-littoralis_Contig1065.13.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1065.13.1 vs. uniprot
Match: A0A6H5KGW0_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGW0_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 1.850e-38
Identity = 65/120 (54.17%), Postives = 86/120 (71.67%), Query Frame = 1
Query:    4 QEGEVVKDRGDMTLARSPSGLAVITWMNSQVVHLMSSNQIFEEDWQPMEYRRRVTGQNGQVLTSKQPVARFDYVGGMGGVDVADQCLNAHAHDHKPMTYFWRRVFDQKLQQAISNAYLLF 363
            +EG    +RGDM  ARS   L ++ W++SQ V+LMS+  +FE++W P+ Y RR    NG  + S QP+AR +YV  +GGVDVADQ L+AHAH H+PMT+FW RV DQK  QA+SNA+LLF
Sbjct:  118 KEGLKATERGDMLTARSDE-LVIVKWIDSQEVYLMSTKHVFEDEWAPLAYERRAANNNGDKVPSHQPLARKEYVKNIGGVDVADQRLSAHAHTHRPMTFFWGRVLDQKFAQAVSNAWLLF 236          
BLAST of mRNA_P-littoralis_Contig1065.13.1 vs. uniprot
Match: A0A6H5KQZ5_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQZ5_9PHAE)

HSP 1 Score: 142 bits (359), Expect = 6.340e-38
Identity = 63/120 (52.50%), Postives = 88/120 (73.33%), Query Frame = 1
Query:    4 QEGEVVKDRGDMTLARSPSGLAVITWMNSQVVHLMSSNQIFEEDWQPMEYRRRVTGQNGQVLTSKQPVARFDYVGGMGGVDVADQCLNAHAHDHKPMTYFWRRVFDQKLQQAISNAYLLF 363
            +EG    +RG M  ARS   L ++ W++SQ V+LMS+  +F ++W+P+ Y +R    NG+ ++S+QP+AR +YV  MGGVDVADQ L +HAH H+PMT+FWRRVFDQK  QA+SN +LLF
Sbjct:  197 KEGMAATERGQMLTARSDE-LVIVKWIDSQEVYLMSTKHVFADEWEPLAYEKRAANNNGEKVSSRQPLARKEYVKNMGGVDVADQRLGSHAHKHRPMTFFWRRVFDQKFAQAVSNGWLLF 315          
BLAST of mRNA_P-littoralis_Contig1065.13.1 vs. uniprot
Match: A0A6H5JDZ7_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDZ7_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 2.470e-34
Identity = 65/121 (53.72%), Postives = 84/121 (69.42%), Query Frame = 1
Query:    4 QEGEVVKDRGDMTLARSPSGLAVITWMNSQVVHLMSSNQIFEEDWQPMEY-RRRVTGQNGQVLTSKQPVARFDYVGGMGGVDVADQCLNAHAHDHKPMTYFWRRVFDQKLQQAISNAYLLF 363
            +EG    +R  M  ARS   L ++ W+ SQ VHLMS+  +F  +W+P+   R+R    NG+ ++S QP+AR  YV  MGGVDVADQ L AHAH H+PMT+FWRRVFDQKL  A+SNA+LLF
Sbjct:  224 REGTKATEREQMLKARSDE-LVIVKWIGSQEVHLMSAKHVFAAEWEPLTLERKRAADNNGEKVSSSQPLARKKYVKNMGGVDVADQRLGAHAHTHRPMTFFWRRVFDQKLSHAVSNAWLLF 343          
BLAST of mRNA_P-littoralis_Contig1065.13.1 vs. uniprot
Match: A0A6H5K972_9PHAE (DDE_Tnp_1_7 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K972_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 8.560e-32
Identity = 60/111 (54.05%), Postives = 77/111 (69.37%), Query Frame = 1
Query:   31 GDMTLARSPSGLAVITWMNSQVVHLMSSNQIFEEDWQPMEYRRRVTGQNGQVLTSKQPVARFDYVGGMGGVDVADQCLNAHAHDHKPMTYFWRRVFDQKLQQAISNAYLLF 363
            G    ARS + + +I W++S+ VHLMS+  +F+EDW P+   +R    +G  ++S QP+AR DYV  MGGVDVADQ L  H H HK  T+FWRRVFDQK  QAISNAYLL+
Sbjct:  255 GRHVFARS-NHIVIIEWVDSKTVHLMSTKHVFDEDWNPVLQTKRAALNDGNSVSSLQPLARLDYVVRMGGVDVADQRLMTHQHGHKQKTFFWRRVFDQKFAQAISNAYLLY 364          
BLAST of mRNA_P-littoralis_Contig1065.13.1 vs. uniprot
Match: A0A6H5KG44_9PHAE (DDE_Tnp_1_7 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG44_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 5.080e-29
Identity = 52/100 (52.00%), Postives = 73/100 (73.00%), Query Frame = 1
Query:    4 QEGEVVKDRGDMTLARSPSGLAVITWMNSQVVHLMSSNQIFEEDWQPMEYRRRVTGQNGQVLTSKQPVARFDYVGGMGGVDVADQCLNAHAHDHKPMTYF 303
            +EG    +RGDM  ARS   L ++ W++SQ V+LMS+  +FE++W P+ Y RR    NG+ ++S+QP+AR +YV  MGGVDVADQ L+AHAH H+PMT+F
Sbjct:  159 KEGLKATERGDMLTARSDE-LVIVKWIDSQEVYLMSTKHVFEDEWAPLAYERRAANNNGEKVSSQQPLARKEYVKNMGGVDVADQRLSAHAHTHRPMTFF 257          
BLAST of mRNA_P-littoralis_Contig1065.13.1 vs. uniprot
Match: A0A6H5JC56_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC56_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 6.140e-22
Identity = 43/69 (62.32%), Postives = 54/69 (78.26%), Query Frame = 1
Query:  157 RRVTGQNGQVLTSKQPVARFDYVGGMGGVDVADQCLNAHAHDHKPMTYFWRRVFDQKLQQAISNAYLLF 363
            +R    NG+ ++S QP+AR ++V  MGGVDVADQ L AHAH H+PMT+FWRRVFDQK  QA+SNA+ LF
Sbjct:  291 KRAADHNGEKVSSSQPLARKEHVKNMGGVDVADQWLGAHAHTHRPMTFFWRRVFDQKFSQAVSNAWFLF 359          
BLAST of mRNA_P-littoralis_Contig1065.13.1 vs. uniprot
Match: A0A6H5LEE0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LEE0_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 6.200e-22
Identity = 51/129 (39.53%), Postives = 77/129 (59.69%), Query Frame = 1
Query:   10 GEVVKDRGDMTLARSPSGLAVITWMNSQVVHLMSSNQIFE-----------EDWQPMEYRRRVTGQNGQVLTSKQPVARFDYVGGMGGVDVADQCLNAHAHDHKPMTYFWRRVFDQKLQQAISNAYLLF 363
            G  + +RGDM   RS   +A + W +S+ + L+S+  + +           + ++P+    R  G+NG+ L  +QP  R DYV  M GVD+ADQ   +H HDHK  T FWRRV+D KL+QA++NA+L+F
Sbjct:  534 GRTIPNRGDMNFCRSGQ-VACVQWADSKDIFLISTIHVAQPAKGKEEAGGIDHFKPLPLSLRAKGRNGEPLDLQQPYMRMDYVLNMLGVDLADQQNGSHTHDHKSYTNFWRRVYDAKLEQALTNAFLIF 661          
BLAST of mRNA_P-littoralis_Contig1065.13.1 vs. uniprot
Match: A0A6H5JHH7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHH7_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 1.120e-19
Identity = 42/63 (66.67%), Postives = 51/63 (80.95%), Query Frame = 1
Query:  175 NGQVLTSKQPVARFDYVGGMGGVDVADQCLNAHAHDHKPMTYFWRRVFDQKLQQAISNAYLLF 363
            NG+ ++S QP+AR +YV  MGGVDVADQ L AHA  H+PMT+FWRRVF QK  QA+SNA+LLF
Sbjct:  303 NGEKVSSSQPLARKEYVKNMGGVDVADQRLGAHARTHRPMTFFWRRVFAQKFSQAVSNAWLLF 365          
BLAST of mRNA_P-littoralis_Contig1065.13.1 vs. uniprot
Match: A0A6H5JER6_9PHAE (DDE_Tnp_1_7 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JER6_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 1.830e-16
Identity = 38/78 (48.72%), Postives = 53/78 (67.95%), Query Frame = 1
Query:  130 EDWQPMEYRRRVTGQNGQVLTSKQPVARFDYVGGMGGVDVADQCLNAHAHDHKPMTYFWRRVFDQKLQQAISNAYLLF 363
            + ++P+    R  G+NG+ L  +QP  R DY   M GVD+ADQ   +H HDHK  T FWRRV+D KL+QA++NA+L+F
Sbjct:  260 DHFKPLPLSLRAKGRNGEPLDLQQPWTRMDYFLNMLGVDLADQQNGSHTHDHKSYTNFWRRVYDAKLEQALTNAFLIF 337          
BLAST of mRNA_P-littoralis_Contig1065.13.1 vs. uniprot
Match: A0A6H5KMF5_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMF5_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 9.300e-16
Identity = 48/119 (40.34%), Postives = 65/119 (54.62%), Query Frame = 1
Query:   31 GDMTLARSPSGLAVITWMNSQVVHLMSSNQIFE--------EDWQPMEYRRRVTGQNGQVLTSKQPVARFDYVGGMGGVDVADQCLNAHAHDHKPMTYFWRRVFDQKLQQAISNAYLLF 363
            GDMT  RS   +A + W +S+ + L S+  I E          ++P+    +  G  G+     QPV R DYV  MGGVD ADQ   +H HDH+  T  WRRVFD K+ Q ++N +LLF
Sbjct:  249 GDMTFCRSGE-MAFVQWRDSKEILLCSTVHIGETGEEGGDINHFKPVPLALKGKGWAGKHKEHDQPVMRMDYVKYMGGVDRADQQNESHYHDHRSYTNHWRRVFDAKIMQMLTNNFLLF 366          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1065.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6H5KGW0_9PHAE1.850e-3854.17DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5KQZ5_9PHAE6.340e-3852.50DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5JDZ7_9PHAE2.470e-3453.72DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5K972_9PHAE8.560e-3254.05DDE_Tnp_1_7 domain-containing protein (Fragment) n... [more]
A0A6H5KG44_9PHAE5.080e-2952.00DDE_Tnp_1_7 domain-containing protein n=2 Tax=Ecto... [more]
A0A6H5JC56_9PHAE6.140e-2262.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LEE0_9PHAE6.200e-2239.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHH7_9PHAE1.120e-1966.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JER6_9PHAE1.830e-1648.72DDE_Tnp_1_7 domain-containing protein (Fragment) n... [more]
A0A6H5KMF5_9PHAE9.300e-1640.34DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1065contigP-littoralis_Contig1065:23161..24009 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog32507.XP_006781967.1
PFAMsDDE_Tnp_1_7
Model size366
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons2
Evalue4.79e-05
EggNOG OGs28P4Z@1|root,2QVRU@2759|Eukaryota,38G0P@33154|Opisthokonta,3BGQ6@33208|Metazoa,3E61I@33213|Bilateria,48S1N@7711|Chordata,49NH8@7742|Vertebrata,4A94I@7898|Actinopterygii
DescriptionpiggyBac transposable element-derived protein
Cds size366
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789396.9936697-CDS-P-littoralis_Contig1065:23160..233151680789396.9936697-CDS-P-littoralis_Contig1065:23160..23315Pylaiella littoralis U1_48CDSP-littoralis_Contig1065 23161..23315 +
1680789397.0030887-CDS-P-littoralis_Contig1065:23798..240091680789397.0030887-CDS-P-littoralis_Contig1065:23798..24009Pylaiella littoralis U1_48CDSP-littoralis_Contig1065 23799..24009 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1065.13.1prot_P-littoralis_Contig1065.13.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1065 23161..24009 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1065.13.1

>prot_P-littoralis_Contig1065.13.1 ID=prot_P-littoralis_Contig1065.13.1|Name=mRNA_P-littoralis_Contig1065.13.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=122bp
KQEGEVVKDRGDMTLARSPSGLAVITWMNSQVVHLMSSNQIFEEDWQPME
YRRRVTGQNGQVLTSKQPVARFDYVGGMGGVDVADQCLNAHAHDHKPMTY
FWRRVFDQKLQQAISNAYLLFC
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mRNA from alignment at P-littoralis_Contig1065:23161..24009+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1065.13.1 ID=mRNA_P-littoralis_Contig1065.13.1|Name=mRNA_P-littoralis_Contig1065.13.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=849bp|location=Sequence derived from alignment at P-littoralis_Contig1065:23161..24009+ (Pylaiella littoralis U1_48)
AAGCAGGAAGGGGAGGTGGTTAAGGACCGTGGCGATATGACCCTTGCGCG CTCGCCGTCGGGGCTTGCGGTCATCACCTGGATGAACTCACAGGTTGTGC ACCTGATGTCGTCGAACCAAATCTTCGAAGAAGACTGGCAGCCTATGGAG TACAGGTGAGCTTTTAGTTGCGATTGGCCTGTCGTTTCGACTGGGGCATG AATCAGGTTGCTGTTTTGTAAGGGTCTCTGAGTCGCTCCCAATGGGTTTC GTCAAGCCTTGAGTGCGTTACCCCAATTTTAGTACCCGCTGCCCAATAAT TTCACCAAACAAACAACACATCTTCTCCCTGCTGTAGAGTTGGTTTGGTG ACTGTGTGGGTTGGCGCTGTCGGAGAAAAATAAAGCGTGCCGTATGAGTG TCGTCGAAAGTCATAGCAATTGGTGTATAAGGTGATGTTGTCGCTCTGAT TTTTCCTGTCCGGGGAGTCCGAGGACCTGGTCGGGATTGTTTATACCCCC CCCGCACCATCTCCTACTGCTCTTTTTACCCCCCCCCGCACTATCTCCTA CTGCTCTTTCTGTACTCAACCGCAACGAATTTTCGACATATCTCCGGCCG CCCTCATGCGCAAAATCCACCCGTTTCTTTAATTGCAGGAGACGTGTTAC AGGCCAAAACGGGCAGGTGCTAACTAGCAAGCAGCCGGTTGCTCGTTTCG ACTACGTGGGGGGCATGGGTGGTGTAGACGTCGCCGATCAGTGCTTAAAC GCGCACGCCCACGATCACAAGCCCATGACGTATTTCTGGCGGCGTGTGTT CGACCAGAAATTGCAACAGGCCATCAGCAACGCGTACCTCCTCTTCTGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig1065:23161..24009+

>mRNA_P-littoralis_Contig1065.13.1 ID=mRNA_P-littoralis_Contig1065.13.1|Name=mRNA_P-littoralis_Contig1065.13.1|organism=Pylaiella littoralis U1_48|type=CDS|length=366bp|location=Sequence derived from alignment at P-littoralis_Contig1065:23161..24009+ (Pylaiella littoralis U1_48)
AAGCAGGAAGGGGAGGTGGTTAAGGACCGTGGCGATATGACCCTTGCGCG
CTCGCCGTCGGGGCTTGCGGTCATCACCTGGATGAACTCACAGGTTGTGC
ACCTGATGTCGTCGAACCAAATCTTCGAAGAAGACTGGCAGCCTATGGAG
TACAGGAGACGTGTTACAGGCCAAAACGGGCAGGTGCTAACTAGCAAGCA
GCCGGTTGCTCGTTTCGACTACGTGGGGGGCATGGGTGGTGTAGACGTCG
CCGATCAGTGCTTAAACGCGCACGCCCACGATCACAAGCCCATGACGTAT
TTCTGGCGGCGTGTGTTCGACCAGAAATTGCAACAGGCCATCAGCAACGC
GTACCTCCTCTTCTGT
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