mRNA_P-littoralis_Contig1065.13.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig1065.13.1 vs. uniprot
Match: A0A6H5KGW0_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGW0_9PHAE) HSP 1 Score: 140 bits (352), Expect = 1.850e-38 Identity = 65/120 (54.17%), Postives = 86/120 (71.67%), Query Frame = 1
Query: 4 QEGEVVKDRGDMTLARSPSGLAVITWMNSQVVHLMSSNQIFEEDWQPMEYRRRVTGQNGQVLTSKQPVARFDYVGGMGGVDVADQCLNAHAHDHKPMTYFWRRVFDQKLQQAISNAYLLF 363
+EG +RGDM ARS L ++ W++SQ V+LMS+ +FE++W P+ Y RR NG + S QP+AR +YV +GGVDVADQ L+AHAH H+PMT+FW RV DQK QA+SNA+LLF
Sbjct: 118 KEGLKATERGDMLTARSDE-LVIVKWIDSQEVYLMSTKHVFEDEWAPLAYERRAANNNGDKVPSHQPLARKEYVKNIGGVDVADQRLSAHAHTHRPMTFFWGRVLDQKFAQAVSNAWLLF 236
BLAST of mRNA_P-littoralis_Contig1065.13.1 vs. uniprot
Match: A0A6H5KQZ5_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQZ5_9PHAE) HSP 1 Score: 142 bits (359), Expect = 6.340e-38 Identity = 63/120 (52.50%), Postives = 88/120 (73.33%), Query Frame = 1
Query: 4 QEGEVVKDRGDMTLARSPSGLAVITWMNSQVVHLMSSNQIFEEDWQPMEYRRRVTGQNGQVLTSKQPVARFDYVGGMGGVDVADQCLNAHAHDHKPMTYFWRRVFDQKLQQAISNAYLLF 363
+EG +RG M ARS L ++ W++SQ V+LMS+ +F ++W+P+ Y +R NG+ ++S+QP+AR +YV MGGVDVADQ L +HAH H+PMT+FWRRVFDQK QA+SN +LLF
Sbjct: 197 KEGMAATERGQMLTARSDE-LVIVKWIDSQEVYLMSTKHVFADEWEPLAYEKRAANNNGEKVSSRQPLARKEYVKNMGGVDVADQRLGSHAHKHRPMTFFWRRVFDQKFAQAVSNGWLLF 315
BLAST of mRNA_P-littoralis_Contig1065.13.1 vs. uniprot
Match: A0A6H5JDZ7_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDZ7_9PHAE) HSP 1 Score: 134 bits (337), Expect = 2.470e-34 Identity = 65/121 (53.72%), Postives = 84/121 (69.42%), Query Frame = 1
Query: 4 QEGEVVKDRGDMTLARSPSGLAVITWMNSQVVHLMSSNQIFEEDWQPMEY-RRRVTGQNGQVLTSKQPVARFDYVGGMGGVDVADQCLNAHAHDHKPMTYFWRRVFDQKLQQAISNAYLLF 363
+EG +R M ARS L ++ W+ SQ VHLMS+ +F +W+P+ R+R NG+ ++S QP+AR YV MGGVDVADQ L AHAH H+PMT+FWRRVFDQKL A+SNA+LLF
Sbjct: 224 REGTKATEREQMLKARSDE-LVIVKWIGSQEVHLMSAKHVFAAEWEPLTLERKRAADNNGEKVSSSQPLARKKYVKNMGGVDVADQRLGAHAHTHRPMTFFWRRVFDQKLSHAVSNAWLLF 343
BLAST of mRNA_P-littoralis_Contig1065.13.1 vs. uniprot
Match: A0A6H5K972_9PHAE (DDE_Tnp_1_7 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K972_9PHAE) HSP 1 Score: 124 bits (312), Expect = 8.560e-32 Identity = 60/111 (54.05%), Postives = 77/111 (69.37%), Query Frame = 1
Query: 31 GDMTLARSPSGLAVITWMNSQVVHLMSSNQIFEEDWQPMEYRRRVTGQNGQVLTSKQPVARFDYVGGMGGVDVADQCLNAHAHDHKPMTYFWRRVFDQKLQQAISNAYLLF 363
G ARS + + +I W++S+ VHLMS+ +F+EDW P+ +R +G ++S QP+AR DYV MGGVDVADQ L H H HK T+FWRRVFDQK QAISNAYLL+
Sbjct: 255 GRHVFARS-NHIVIIEWVDSKTVHLMSTKHVFDEDWNPVLQTKRAALNDGNSVSSLQPLARLDYVVRMGGVDVADQRLMTHQHGHKQKTFFWRRVFDQKFAQAISNAYLLY 364
BLAST of mRNA_P-littoralis_Contig1065.13.1 vs. uniprot
Match: A0A6H5KG44_9PHAE (DDE_Tnp_1_7 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG44_9PHAE) HSP 1 Score: 114 bits (286), Expect = 5.080e-29 Identity = 52/100 (52.00%), Postives = 73/100 (73.00%), Query Frame = 1
Query: 4 QEGEVVKDRGDMTLARSPSGLAVITWMNSQVVHLMSSNQIFEEDWQPMEYRRRVTGQNGQVLTSKQPVARFDYVGGMGGVDVADQCLNAHAHDHKPMTYF 303
+EG +RGDM ARS L ++ W++SQ V+LMS+ +FE++W P+ Y RR NG+ ++S+QP+AR +YV MGGVDVADQ L+AHAH H+PMT+F
Sbjct: 159 KEGLKATERGDMLTARSDE-LVIVKWIDSQEVYLMSTKHVFEDEWAPLAYERRAANNNGEKVSSQQPLARKEYVKNMGGVDVADQRLSAHAHTHRPMTFF 257
BLAST of mRNA_P-littoralis_Contig1065.13.1 vs. uniprot
Match: A0A6H5JC56_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC56_9PHAE) HSP 1 Score: 98.2 bits (243), Expect = 6.140e-22 Identity = 43/69 (62.32%), Postives = 54/69 (78.26%), Query Frame = 1
Query: 157 RRVTGQNGQVLTSKQPVARFDYVGGMGGVDVADQCLNAHAHDHKPMTYFWRRVFDQKLQQAISNAYLLF 363
+R NG+ ++S QP+AR ++V MGGVDVADQ L AHAH H+PMT+FWRRVFDQK QA+SNA+ LF
Sbjct: 291 KRAADHNGEKVSSSQPLARKEHVKNMGGVDVADQWLGAHAHTHRPMTFFWRRVFDQKFSQAVSNAWFLF 359
BLAST of mRNA_P-littoralis_Contig1065.13.1 vs. uniprot
Match: A0A6H5LEE0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LEE0_9PHAE) HSP 1 Score: 99.8 bits (247), Expect = 6.200e-22 Identity = 51/129 (39.53%), Postives = 77/129 (59.69%), Query Frame = 1
Query: 10 GEVVKDRGDMTLARSPSGLAVITWMNSQVVHLMSSNQIFE-----------EDWQPMEYRRRVTGQNGQVLTSKQPVARFDYVGGMGGVDVADQCLNAHAHDHKPMTYFWRRVFDQKLQQAISNAYLLF 363
G + +RGDM RS +A + W +S+ + L+S+ + + + ++P+ R G+NG+ L +QP R DYV M GVD+ADQ +H HDHK T FWRRV+D KL+QA++NA+L+F
Sbjct: 534 GRTIPNRGDMNFCRSGQ-VACVQWADSKDIFLISTIHVAQPAKGKEEAGGIDHFKPLPLSLRAKGRNGEPLDLQQPYMRMDYVLNMLGVDLADQQNGSHTHDHKSYTNFWRRVYDAKLEQALTNAFLIF 661
BLAST of mRNA_P-littoralis_Contig1065.13.1 vs. uniprot
Match: A0A6H5JHH7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHH7_9PHAE) HSP 1 Score: 93.2 bits (230), Expect = 1.120e-19 Identity = 42/63 (66.67%), Postives = 51/63 (80.95%), Query Frame = 1
Query: 175 NGQVLTSKQPVARFDYVGGMGGVDVADQCLNAHAHDHKPMTYFWRRVFDQKLQQAISNAYLLF 363
NG+ ++S QP+AR +YV MGGVDVADQ L AHA H+PMT+FWRRVF QK QA+SNA+LLF
Sbjct: 303 NGEKVSSSQPLARKEYVKNMGGVDVADQRLGAHARTHRPMTFFWRRVFAQKFSQAVSNAWLLF 365
BLAST of mRNA_P-littoralis_Contig1065.13.1 vs. uniprot
Match: A0A6H5JER6_9PHAE (DDE_Tnp_1_7 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JER6_9PHAE) HSP 1 Score: 84.0 bits (206), Expect = 1.830e-16 Identity = 38/78 (48.72%), Postives = 53/78 (67.95%), Query Frame = 1
Query: 130 EDWQPMEYRRRVTGQNGQVLTSKQPVARFDYVGGMGGVDVADQCLNAHAHDHKPMTYFWRRVFDQKLQQAISNAYLLF 363
+ ++P+ R G+NG+ L +QP R DY M GVD+ADQ +H HDHK T FWRRV+D KL+QA++NA+L+F
Sbjct: 260 DHFKPLPLSLRAKGRNGEPLDLQQPWTRMDYFLNMLGVDLADQQNGSHTHDHKSYTNFWRRVYDAKLEQALTNAFLIF 337
BLAST of mRNA_P-littoralis_Contig1065.13.1 vs. uniprot
Match: A0A6H5KMF5_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMF5_9PHAE) HSP 1 Score: 82.0 bits (201), Expect = 9.300e-16 Identity = 48/119 (40.34%), Postives = 65/119 (54.62%), Query Frame = 1
Query: 31 GDMTLARSPSGLAVITWMNSQVVHLMSSNQIFE--------EDWQPMEYRRRVTGQNGQVLTSKQPVARFDYVGGMGGVDVADQCLNAHAHDHKPMTYFWRRVFDQKLQQAISNAYLLF 363
GDMT RS +A + W +S+ + L S+ I E ++P+ + G G+ QPV R DYV MGGVD ADQ +H HDH+ T WRRVFD K+ Q ++N +LLF
Sbjct: 249 GDMTFCRSGE-MAFVQWRDSKEILLCSTVHIGETGEEGGDINHFKPVPLALKGKGWAGKHKEHDQPVMRMDYVKYMGGVDRADQQNESHYHDHRSYTNHWRRVFDAKIMQMLTNNFLLF 366 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1065.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1065.13.1 >prot_P-littoralis_Contig1065.13.1 ID=prot_P-littoralis_Contig1065.13.1|Name=mRNA_P-littoralis_Contig1065.13.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=122bp KQEGEVVKDRGDMTLARSPSGLAVITWMNSQVVHLMSSNQIFEEDWQPMEback to top mRNA from alignment at P-littoralis_Contig1065:23161..24009+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1065.13.1 ID=mRNA_P-littoralis_Contig1065.13.1|Name=mRNA_P-littoralis_Contig1065.13.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=849bp|location=Sequence derived from alignment at P-littoralis_Contig1065:23161..24009+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1065:23161..24009+ >mRNA_P-littoralis_Contig1065.13.1 ID=mRNA_P-littoralis_Contig1065.13.1|Name=mRNA_P-littoralis_Contig1065.13.1|organism=Pylaiella littoralis U1_48|type=CDS|length=366bp|location=Sequence derived from alignment at P-littoralis_Contig1065:23161..24009+ (Pylaiella littoralis U1_48)back to top |