mRNA_P-littoralis_Contig1064.1.1 (mRNA) Pylaiella littoralis U1_48
|
Overview
Homology
BLAST of mRNA_P-littoralis_Contig1064.1.1 vs. uniprot
Match: A0A6H5KCK7_9PHAE (DDE_Tnp_1_7 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCK7_9PHAE) HSP 1 Score: 95.5 bits (236), Expect = 5.810e-21 Identity = 53/105 (50.48%), Postives = 64/105 (60.95%), Query Frame = 1
Query: 1 GFPGDPKLRAWADCPLGRTCRMVLFVLFGACPALAAQLLLFPGNHIAMDNFYTSPILFLCLYWNGVFAVGTLRQIHRGATDAVRYWTVTKQAPKKKGQMVFARFG 315
G GDPKLR W DCPLGRT R VL VL GAC ++ G +IAMDN++TSP LF CL + +FAVGT R G AV Y + P ++G+M FAR G
Sbjct: 21 GMNGDPKLRVWFDCPLGRTTRHVLHVLLGACKKFGDKID-GSGVYIAMDNYFTSPTLFECLASHDIFAVGTCRSNRTGG--AVPYLQSLDRRPVERGEMHFARAG 122
BLAST of mRNA_P-littoralis_Contig1064.1.1 vs. uniprot
Match: A0A6H5JW40_9PHAE (HTH La-type RNA-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW40_9PHAE) HSP 1 Score: 93.6 bits (231), Expect = 4.990e-20 Identity = 52/105 (49.52%), Postives = 63/105 (60.00%), Query Frame = 1
Query: 1 GFPGDPKLRAWADCPLGRTCRMVLFVLFGACPALAAQLLLFPGNHIAMDNFYTSPILFLCLYWNGVFAVGTLRQIHRGATDAVRYWTVTKQAPKKKGQMVFARFG 315
G GDPKLR W DCPLGRT R VL VL GAC ++ G +IAMDN++ SP LF CL + +FAVGT R G AV Y + P ++G+M FAR G
Sbjct: 850 GMNGDPKLRVWFDCPLGRTTRHVLHVLLGACKKFGDKID-GSGAYIAMDNYFKSPTLFECLASHDIFAVGTCRSNRTGG--AVPYLQSLDRRPVERGEMHFARAG 951
BLAST of mRNA_P-littoralis_Contig1064.1.1 vs. uniprot
Match: A0A6H5JJP9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJP9_9PHAE) HSP 1 Score: 93.2 bits (230), Expect = 6.800e-20 Identity = 53/105 (50.48%), Postives = 62/105 (59.05%), Query Frame = 1
Query: 1 GFPGDPKLRAWADCPLGRTCRMVLFVLFGACPALAAQLLLFPGNHIAMDNFYTSPILFLCLYWNGVFAVGTLRQIHRGATDAVRYWTVTKQAPKKKGQMVFARFG 315
G GDPKLR W DCPLGRT R VL VL GAC ++ G HIAM N +TSP LF CL + +FAVGT R G AV Y + P ++G+M FAR G
Sbjct: 796 GMNGDPKLRVWFDCPLGRTTRHVLHVLLGACKKFGDKID-GSGVHIAMSNNFTSPTLFECLASHDIFAVGTCRSNRTGG--AVPYLQSLDRRPVERGEMHFARAG 897
BLAST of mRNA_P-littoralis_Contig1064.1.1 vs. uniprot
Match: A0A6H5KCC7_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCC7_9PHAE) HSP 1 Score: 84.7 bits (208), Expect = 5.330e-17 Identity = 50/105 (47.62%), Postives = 58/105 (55.24%), Query Frame = 1
Query: 1 GFPGDPKLRAWADCPLGRTCRMVLFVLFGACPALAAQLLLFPGNHIAMDNFYTSPILFLCLYWNGVFAVGTLRQIHRGATDAVRYWTVTKQAPKKKGQMVFARFG 315
G GDPKLR + DCPLGRT R VL VL G C L Q + G IAMDN++TSP LF CL + +FAVGT R DA Y + +G M F R G
Sbjct: 165 GMKGDPKLRPYMDCPLGRTTRHVLHVLLGECGVLR-QKIDGSGVFIAMDNYFTSPTLFECLASHDIFAVGTCRADRTAGADA--YLESLGRTIPNRGDMNFCRSG 266
BLAST of mRNA_P-littoralis_Contig1064.1.1 vs. uniprot
Match: A0A6H5LEE0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LEE0_9PHAE) HSP 1 Score: 84.7 bits (208), Expect = 6.240e-17 Identity = 50/105 (47.62%), Postives = 58/105 (55.24%), Query Frame = 1
Query: 1 GFPGDPKLRAWADCPLGRTCRMVLFVLFGACPALAAQLLLFPGNHIAMDNFYTSPILFLCLYWNGVFAVGTLRQIHRGATDAVRYWTVTKQAPKKKGQMVFARFG 315
G GDPKLR + DCPLGRT R VL VL G C L Q + G IAMDN++TSP LF CL + +FAVGT R DA Y + +G M F R G
Sbjct: 448 GMKGDPKLRPYMDCPLGRTTRHVLHVLLGECGVLR-QKIDGSGVFIAMDNYFTSPTLFECLASHDIFAVGTCRADRTAGADA--YLESLGRTIPNRGDMNFCRSG 549
BLAST of mRNA_P-littoralis_Contig1064.1.1 vs. uniprot
Match: A0A6H5JXZ2_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXZ2_9PHAE) HSP 1 Score: 79.0 bits (193), Expect = 5.800e-15 Identity = 47/105 (44.76%), Postives = 57/105 (54.29%), Query Frame = 1
Query: 1 GFPGDPKLRAWADCPLGRTCRMVLFVLFGACPALAAQLLLFPGNH--IAMDNFYTSPILFLCLYWNGVFAVGTLRQIHRGATDAVRYWTVTKQAPKKKGQMVFAR 309
G GDPKLR + DCPLGRT R VL VL G C L ++ G+ IAMDN++TS LF CL + +FAVGT R DA Y + +G M F R
Sbjct: 128 GMKGDPKLRPYMDCPLGRTTRHVLHVLLGECGVLRQKI---DGSEVFIAMDNYFTSLTLFECLASHDIFAVGTCRADRTAGADA--YLETLGRTIPNRGDMNFCR 227
BLAST of mRNA_P-littoralis_Contig1064.1.1 vs. uniprot
Match: A0A6H5KJJ0_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJJ0_9PHAE) HSP 1 Score: 78.2 bits (191), Expect = 1.180e-14 Identity = 47/105 (44.76%), Postives = 55/105 (52.38%), Query Frame = 1
Query: 1 GFPGDPKLRAWADCPLGRTCRMVLFVLFGACPALAAQLLLFPGNHIAMDNFYTSPILFLCLYWNGVFAVGTLRQIHRGATDAVRYWTVTKQAPKKKGQMVFARFG 315
G GDPKLR + DCPLGR R VL VL G C L Q + G IAMDN++TSP +F CL +FAVGT R DA Y + +G M R G
Sbjct: 179 GMKGDPKLRPYMDCPLGRATRHVLHVLLGECGVLR-QKIDGSGVFIAMDNYFTSPTVFECLASYDIFAVGTCRADRTAGADA--YLESLGRTIPNRGDMNLCRSG 280
BLAST of mRNA_P-littoralis_Contig1064.1.1 vs. uniprot
Match: A0A6H5KMJ3_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMJ3_9PHAE) HSP 1 Score: 72.0 bits (175), Expect = 8.020e-13 Identity = 38/68 (55.88%), Postives = 44/68 (64.71%), Query Frame = 1
Query: 1 GFPGDPKLRAWADCPLGRTCRMVLFVLFGACPALAAQLLLFPGNHIAMDNFYTSPILFLCLYWNGVFA 204
G GDPKLR + DCPLGRT R VL VL G C L Q + G IAMDN++TSP LF CL + +FA
Sbjct: 178 GMKGDPKLRPYMDCPLGRTTRHVLHVLLGECGVLR-QKIDGSGLFIAMDNYFTSPTLFECLASHDIFA 244 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1064.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1064.1.1 >prot_P-littoralis_Contig1064.1.1 ID=prot_P-littoralis_Contig1064.1.1|Name=mRNA_P-littoralis_Contig1064.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=106bp GFPGDPKLRAWADCPLGRTCRMVLFVLFGACPALAAQLLLFPGNHIAMDNback to top mRNA from alignment at P-littoralis_Contig1064:2396..2714+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1064.1.1 ID=mRNA_P-littoralis_Contig1064.1.1|Name=mRNA_P-littoralis_Contig1064.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=319bp|location=Sequence derived from alignment at P-littoralis_Contig1064:2396..2714+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1064:2396..2714+ >mRNA_P-littoralis_Contig1064.1.1 ID=mRNA_P-littoralis_Contig1064.1.1|Name=mRNA_P-littoralis_Contig1064.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=318bp|location=Sequence derived from alignment at P-littoralis_Contig1064:2396..2714+ (Pylaiella littoralis U1_48)back to top |