mRNA_P-littoralis_Contig1064.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1064.1.1
Unique NamemRNA_P-littoralis_Contig1064.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1064.1.1 vs. uniprot
Match: A0A6H5KCK7_9PHAE (DDE_Tnp_1_7 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCK7_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 5.810e-21
Identity = 53/105 (50.48%), Postives = 64/105 (60.95%), Query Frame = 1
Query:    1 GFPGDPKLRAWADCPLGRTCRMVLFVLFGACPALAAQLLLFPGNHIAMDNFYTSPILFLCLYWNGVFAVGTLRQIHRGATDAVRYWTVTKQAPKKKGQMVFARFG 315
            G  GDPKLR W DCPLGRT R VL VL GAC     ++    G +IAMDN++TSP LF CL  + +FAVGT R    G   AV Y     + P ++G+M FAR G
Sbjct:   21 GMNGDPKLRVWFDCPLGRTTRHVLHVLLGACKKFGDKID-GSGVYIAMDNYFTSPTLFECLASHDIFAVGTCRSNRTGG--AVPYLQSLDRRPVERGEMHFARAG 122          
BLAST of mRNA_P-littoralis_Contig1064.1.1 vs. uniprot
Match: A0A6H5JW40_9PHAE (HTH La-type RNA-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW40_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 4.990e-20
Identity = 52/105 (49.52%), Postives = 63/105 (60.00%), Query Frame = 1
Query:    1 GFPGDPKLRAWADCPLGRTCRMVLFVLFGACPALAAQLLLFPGNHIAMDNFYTSPILFLCLYWNGVFAVGTLRQIHRGATDAVRYWTVTKQAPKKKGQMVFARFG 315
            G  GDPKLR W DCPLGRT R VL VL GAC     ++    G +IAMDN++ SP LF CL  + +FAVGT R    G   AV Y     + P ++G+M FAR G
Sbjct:  850 GMNGDPKLRVWFDCPLGRTTRHVLHVLLGACKKFGDKID-GSGAYIAMDNYFKSPTLFECLASHDIFAVGTCRSNRTGG--AVPYLQSLDRRPVERGEMHFARAG 951          
BLAST of mRNA_P-littoralis_Contig1064.1.1 vs. uniprot
Match: A0A6H5JJP9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJP9_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 6.800e-20
Identity = 53/105 (50.48%), Postives = 62/105 (59.05%), Query Frame = 1
Query:    1 GFPGDPKLRAWADCPLGRTCRMVLFVLFGACPALAAQLLLFPGNHIAMDNFYTSPILFLCLYWNGVFAVGTLRQIHRGATDAVRYWTVTKQAPKKKGQMVFARFG 315
            G  GDPKLR W DCPLGRT R VL VL GAC     ++    G HIAM N +TSP LF CL  + +FAVGT R    G   AV Y     + P ++G+M FAR G
Sbjct:  796 GMNGDPKLRVWFDCPLGRTTRHVLHVLLGACKKFGDKID-GSGVHIAMSNNFTSPTLFECLASHDIFAVGTCRSNRTGG--AVPYLQSLDRRPVERGEMHFARAG 897          
BLAST of mRNA_P-littoralis_Contig1064.1.1 vs. uniprot
Match: A0A6H5KCC7_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCC7_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 5.330e-17
Identity = 50/105 (47.62%), Postives = 58/105 (55.24%), Query Frame = 1
Query:    1 GFPGDPKLRAWADCPLGRTCRMVLFVLFGACPALAAQLLLFPGNHIAMDNFYTSPILFLCLYWNGVFAVGTLRQIHRGATDAVRYWTVTKQAPKKKGQMVFARFG 315
            G  GDPKLR + DCPLGRT R VL VL G C  L  Q +   G  IAMDN++TSP LF CL  + +FAVGT R       DA  Y     +    +G M F R G
Sbjct:  165 GMKGDPKLRPYMDCPLGRTTRHVLHVLLGECGVLR-QKIDGSGVFIAMDNYFTSPTLFECLASHDIFAVGTCRADRTAGADA--YLESLGRTIPNRGDMNFCRSG 266          
BLAST of mRNA_P-littoralis_Contig1064.1.1 vs. uniprot
Match: A0A6H5LEE0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LEE0_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 6.240e-17
Identity = 50/105 (47.62%), Postives = 58/105 (55.24%), Query Frame = 1
Query:    1 GFPGDPKLRAWADCPLGRTCRMVLFVLFGACPALAAQLLLFPGNHIAMDNFYTSPILFLCLYWNGVFAVGTLRQIHRGATDAVRYWTVTKQAPKKKGQMVFARFG 315
            G  GDPKLR + DCPLGRT R VL VL G C  L  Q +   G  IAMDN++TSP LF CL  + +FAVGT R       DA  Y     +    +G M F R G
Sbjct:  448 GMKGDPKLRPYMDCPLGRTTRHVLHVLLGECGVLR-QKIDGSGVFIAMDNYFTSPTLFECLASHDIFAVGTCRADRTAGADA--YLESLGRTIPNRGDMNFCRSG 549          
BLAST of mRNA_P-littoralis_Contig1064.1.1 vs. uniprot
Match: A0A6H5JXZ2_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXZ2_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 5.800e-15
Identity = 47/105 (44.76%), Postives = 57/105 (54.29%), Query Frame = 1
Query:    1 GFPGDPKLRAWADCPLGRTCRMVLFVLFGACPALAAQLLLFPGNH--IAMDNFYTSPILFLCLYWNGVFAVGTLRQIHRGATDAVRYWTVTKQAPKKKGQMVFAR 309
            G  GDPKLR + DCPLGRT R VL VL G C  L  ++    G+   IAMDN++TS  LF CL  + +FAVGT R       DA  Y     +    +G M F R
Sbjct:  128 GMKGDPKLRPYMDCPLGRTTRHVLHVLLGECGVLRQKI---DGSEVFIAMDNYFTSLTLFECLASHDIFAVGTCRADRTAGADA--YLETLGRTIPNRGDMNFCR 227          
BLAST of mRNA_P-littoralis_Contig1064.1.1 vs. uniprot
Match: A0A6H5KJJ0_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJJ0_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 1.180e-14
Identity = 47/105 (44.76%), Postives = 55/105 (52.38%), Query Frame = 1
Query:    1 GFPGDPKLRAWADCPLGRTCRMVLFVLFGACPALAAQLLLFPGNHIAMDNFYTSPILFLCLYWNGVFAVGTLRQIHRGATDAVRYWTVTKQAPKKKGQMVFARFG 315
            G  GDPKLR + DCPLGR  R VL VL G C  L  Q +   G  IAMDN++TSP +F CL    +FAVGT R       DA  Y     +    +G M   R G
Sbjct:  179 GMKGDPKLRPYMDCPLGRATRHVLHVLLGECGVLR-QKIDGSGVFIAMDNYFTSPTVFECLASYDIFAVGTCRADRTAGADA--YLESLGRTIPNRGDMNLCRSG 280          
BLAST of mRNA_P-littoralis_Contig1064.1.1 vs. uniprot
Match: A0A6H5KMJ3_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMJ3_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 8.020e-13
Identity = 38/68 (55.88%), Postives = 44/68 (64.71%), Query Frame = 1
Query:    1 GFPGDPKLRAWADCPLGRTCRMVLFVLFGACPALAAQLLLFPGNHIAMDNFYTSPILFLCLYWNGVFA 204
            G  GDPKLR + DCPLGRT R VL VL G C  L  Q +   G  IAMDN++TSP LF CL  + +FA
Sbjct:  178 GMKGDPKLRPYMDCPLGRTTRHVLHVLLGECGVLR-QKIDGSGLFIAMDNYFTSPTLFECLASHDIFA 244          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1064.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5KCK7_9PHAE5.810e-2150.48DDE_Tnp_1_7 domain-containing protein n=3 Tax=Ecto... [more]
A0A6H5JW40_9PHAE4.990e-2049.52HTH La-type RNA-binding domain-containing protein ... [more]
A0A6H5JJP9_9PHAE6.800e-2050.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCC7_9PHAE5.330e-1747.62DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5LEE0_9PHAE6.240e-1747.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXZ2_9PHAE5.800e-1544.76DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5KJJ0_9PHAE1.180e-1444.76DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5KMJ3_9PHAE8.020e-1355.88DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1064contigP-littoralis_Contig1064:2396..2714 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size319
Hectar predicted targeting categorysignal peptide
Exons1
Cds size318
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789396.424178-CDS-P-littoralis_Contig1064:2395..27131680789396.424178-CDS-P-littoralis_Contig1064:2395..2713Pylaiella littoralis U1_48CDSP-littoralis_Contig1064 2396..2713 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1064.1.1prot_P-littoralis_Contig1064.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1064 2396..2713 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1064.1.1

>prot_P-littoralis_Contig1064.1.1 ID=prot_P-littoralis_Contig1064.1.1|Name=mRNA_P-littoralis_Contig1064.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=106bp
GFPGDPKLRAWADCPLGRTCRMVLFVLFGACPALAAQLLLFPGNHIAMDN
FYTSPILFLCLYWNGVFAVGTLRQIHRGATDAVRYWTVTKQAPKKKGQMV
FARFGF
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mRNA from alignment at P-littoralis_Contig1064:2396..2714+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1064.1.1 ID=mRNA_P-littoralis_Contig1064.1.1|Name=mRNA_P-littoralis_Contig1064.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=319bp|location=Sequence derived from alignment at P-littoralis_Contig1064:2396..2714+ (Pylaiella littoralis U1_48)
GGGTTTCCGGGAGATCCGAAGCTACGCGCGTGGGCGGATTGCCCGCTAGG ACGCACGTGCCGGATGGTACTGTTCGTACTGTTTGGCGCGTGCCCTGCTC TGGCGGCTCAACTACTCCTGTTTCCTGGCAACCACATCGCCATGGACAAC TTCTACACTTCACCAATCCTCTTCTTGTGCCTGTACTGGAATGGGGTTTT CGCTGTTGGGACCCTCAGGCAGATCCACCGGGGTGCGACGGATGCCGTGC GATATTGGACGGTCACCAAGCAGGCTCCCAAGAAGAAGGGGCAGATGGTT TTCGCAAGATTCGGGTTCT
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Coding sequence (CDS) from alignment at P-littoralis_Contig1064:2396..2714+

>mRNA_P-littoralis_Contig1064.1.1 ID=mRNA_P-littoralis_Contig1064.1.1|Name=mRNA_P-littoralis_Contig1064.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=318bp|location=Sequence derived from alignment at P-littoralis_Contig1064:2396..2714+ (Pylaiella littoralis U1_48)
GGGTTTCCGGGAGATCCGAAGCTACGCGCGTGGGCGGATTGCCCGCTAGG
ACGCACGTGCCGGATGGTACTGTTCGTACTGTTTGGCGCGTGCCCTGCTC
TGGCGGCTCAACTACTCCTGTTTCCTGGCAACCACATCGCCATGGACAAC
TTCTACACTTCACCAATCCTCTTCTTGTGCCTGTACTGGAATGGGGTTTT
CGCTGTTGGGACCCTCAGGCAGATCCACCGGGGTGCGACGGATGCCGTGC
GATATTGGACGGTCACCAAGCAGGCTCCCAAGAAGAAGGGGCAGATGGTT
TTCGCAAGATTCGGGTTC
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