mRNA_P-littoralis_Contig1060.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-littoralis_Contig1060.1.1
Unique Name	mRNA_P-littoralis_Contig1060.1.1
Type	mRNA
Organism	Pylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))

Homology

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BLAST of mRNA_P-littoralis_Contig1060.1.1 vs. uniprot
Match: A0A6H5KDP2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDP2_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 1.030e-20
Identity = 41/60 (68.33%), Postives = 51/60 (85.00%), Query Frame = 1

Query:    1 MQSVCIVYACLAVKRNAGILDKESKLAAAAKGYEEIAVPGFFRWARDNDIVLP-AWLTVE 177
            +Q+VCIVYACLAVKRNAGI+  E+K  AAAKGY++IAVPGFF+W ++N IV+  AWLT E
Sbjct:   42 LQNVCIVYACLAVKRNAGIVSTEAKYKAAAKGYKDIAVPGFFKWLKENGIVIKQAWLTFE 101

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BLAST of mRNA_P-littoralis_Contig1060.1.1 vs. uniprot
Match: A0A6H5L481_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L481_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 1.160e-20
Identity = 42/60 (70.00%), Postives = 53/60 (88.33%), Query Frame = 1

Query:    1 MQSVCIVYACLAVKRNAGILDKESKLAAAAKGYEEIAVPGFFRWARDNDIVLPAWLTVEK 180
            +Q+VCIVY+CLAVKRNAG++  E+K AAAA+GY EIAVPGFFRWARDNDI  P+ LT+++
Sbjct:   42 IQNVCIVYSCLAVKRNAGVVGTEAKRAAAAQGYREIAVPGFFRWARDNDITFPSELTMKR 101

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BLAST of mRNA_P-littoralis_Contig1060.1.1 vs. uniprot
Match: A0A6H5JUY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUY9_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 5.420e-20
Identity = 41/60 (68.33%), Postives = 51/60 (85.00%), Query Frame = 1

Query:    1 MQSVCIVYACLAVKRNAGILDKESKLAAAAKGYEEIAVPGFFRWARDNDIVLP-AWLTVE 177
            +Q+VCIVYACLAVKRNAGI+  E+K  AAAKGY++IAVPGFF+W ++N IV+  AWLT E
Sbjct:   42 LQNVCIVYACLAVKRNAGIVSTEAKYKAAAKGYKDIAVPGFFKWLKENGIVIKQAWLTFE 101

[Close]

BLAST of mRNA_P-littoralis_Contig1060.1.1 vs. uniprot
Match: A0A6H5JZP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZP4_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 6.060e-20
Identity = 41/60 (68.33%), Postives = 51/60 (85.00%), Query Frame = 1

Query:    1 MQSVCIVYACLAVKRNAGILDKESKLAAAAKGYEEIAVPGFFRWARDNDIVLP-AWLTVE 177
            +Q+VCIVYACLAVKRNAGI+  E+K  AAAKGY++IAVPGFF+W ++N IV+  AWLT E
Sbjct:   42 LQNVCIVYACLAVKRNAGIVSTEAKYKAAAKGYKDIAVPGFFKWLKENGIVIKQAWLTFE 101

[Close]

BLAST of mRNA_P-littoralis_Contig1060.1.1 vs. uniprot
Match: A0A6H5KFI6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFI6_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 6.670e-20
Identity = 41/59 (69.49%), Postives = 50/59 (84.75%), Query Frame = 1

Query:    4 QSVCIVYACLAVKRNAGILDKESKLAAAAKGYEEIAVPGFFRWARDNDIVLP-AWLTVE 177
            Q+VCIVYACLAVKRNAGI+  E+K  AAAKGY++IAVPGFF+W ++N IV+  AWLT E
Sbjct:   91 QNVCIVYACLAVKRNAGIVSTEAKYKAAAKGYKDIAVPGFFKWLKENGIVIKQAWLTFE 149

[Close]

BLAST of mRNA_P-littoralis_Contig1060.1.1 vs. uniprot
Match: A0A6H5JXZ8_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXZ8_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 7.750e-18
Identity = 38/63 (60.32%), Postives = 49/63 (77.78%), Query Frame = 1

Query:    1 MQSVCIVYACLAVKRNAGILDKESKLAAAAKGYEEIAVPGFFRWARDN----DIVLPAWLTVE 177
            +Q+VCIVYACLAVKRNAGI+  ++K AAA +GY++IAVPGFF+W ++N    D  L  WLT E
Sbjct:   43 LQNVCIVYACLAVKRNAGIVSTQAKHAAAPQGYKDIAVPGFFKWLQENLDKEDFFLQLWLTFE 105

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BLAST of mRNA_P-littoralis_Contig1060.1.1 vs. uniprot
Match: A0A6H5KBX2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBX2_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 2.680e-17
Identity = 39/63 (61.90%), Postives = 50/63 (79.37%), Query Frame = 1

Query:    1 MQSVCIVYACLAVKRNAGILDKESKLAAAAKGYEEIAVPGFFRWARDN----DIVLPAWLTVE 177
            +Q+VCIVYACLAVKRNAGI+  ++K AAAA+GY++IAVPGFF+W ++N    D  L  WLT E
Sbjct:   21 LQNVCIVYACLAVKRNAGIVSTQAKHAAAAQGYKDIAVPGFFKWLQENLDKEDFFLQPWLTFE 83

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BLAST of mRNA_P-littoralis_Contig1060.1.1 vs. uniprot
Match: A0A6H5JF32_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF32_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 4.210e-17
Identity = 37/63 (58.73%), Postives = 49/63 (77.78%), Query Frame = 1

Query:    1 MQSVCIVYACLAVKRNAGILDKESKLAAAAKGYEEIAVPGFFRWARDN----DIVLPAWLTVE 177
            +Q+VCIVYACLAVKRNAG++  ++K A AA+GY++IAVPGFF+W ++N    D  L  WLT E
Sbjct:   43 LQNVCIVYACLAVKRNAGMVFTQAKHATAAQGYKDIAVPGFFKWLQENLDKEDFFLQPWLTFE 105

[Close]

BLAST of mRNA_P-littoralis_Contig1060.1.1 vs. uniprot
Match: A0A6H5JJR6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJR6_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 1.300e-16
Identity = 37/63 (58.73%), Postives = 47/63 (74.60%), Query Frame = 1

Query:    1 MQSVCIVYACLAVKRNAGILDKESKLAAAAKGYEEIAVPGFFRWARDN----DIVLPAWLTVE 177
            +Q+VCIVYACLAVKRNAGI+  ++K AA AKGY++IAVPGFF+W ++N          WLT E
Sbjct:   44 LQNVCIVYACLAVKRNAGIVSTQAKHAAVAKGYKDIAVPGFFKWLKENLEADQYFSQPWLTFE 106

[Close]

BLAST of mRNA_P-littoralis_Contig1060.1.1 vs. uniprot
Match: A0A6H5K889_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K889_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 1.290e-14
Identity = 31/47 (65.96%), Postives = 42/47 (89.36%), Query Frame = 1

Query:    1 MQSVCIVYACLAVKRNAGILDKESKLAAAAKGYEEIAVPGFFRWARD 141
            +Q+VCIVYACLAVKRNAGI+  ++K AAA +GY++IAVPGFF+W ++
Sbjct:   43 LQNVCIVYACLAVKRNAGIVSTQAKHAAAVQGYKDIAVPGFFKWLQE 89

The following BLAST results are available for this feature:

BLAST of mRNA_P-littoralis_Contig1060.1.1 vs. uniprot

BLAST of mRNA_P-littoralis_Contig1060.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16


Match Name	E-value	Identity	Description
A0A6H5KDP2_9PHAE	1.030e-20	68.33	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L481_9PHAE	1.160e-20	70.00	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
A0A6H5JUY9_9PHAE	5.420e-20	68.33	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JZP4_9PHAE	6.060e-20	68.33	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KFI6_9PHAE	6.670e-20	69.49	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
A0A6H5JXZ8_9PHAE	7.750e-18	60.32	Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KBX2_9PHAE	2.680e-17	61.90	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JF32_9PHAE	4.210e-17	58.73	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JJR6_9PHAE	1.300e-16	58.73	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K889_9PHAE	1.290e-14	65.96	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-littoralis_Contig1060	contig	P-littoralis_Contig1060:645..824 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Pylaiella littoralis U1_48 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	0
Start	1
Model size	182
Hectar predicted targeting category	other localisation
Exons	1
Cds size	180

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680789394.579153-CDS-P-littoralis_Contig1060:644..824	1680789394.579153-CDS-P-littoralis_Contig1060:644..824	Pylaiella littoralis U1_48	CDS	P-littoralis_Contig1060 645..824 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-littoralis_Contig1060.1.1	prot_P-littoralis_Contig1060.1.1	Pylaiella littoralis U1_48	polypeptide	P-littoralis_Contig1060 645..824 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-littoralis_Contig1060:645..824-
coding sequence from alignment at P-littoralis_Contig1060:645..824-

protein sequence of mRNA_P-littoralis_Contig1060.1.1

>prot_P-littoralis_Contig1060.1.1 ID=prot_P-littoralis_Contig1060.1.1|Name=mRNA_P-littoralis_Contig1060.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=60bp
MQSVCIVYACLAVKRNAGILDKESKLAAAAKGYEEIAVPGFFRWARDNDI
VLPAWLTVEK

mRNA from alignment at P-littoralis_Contig1060:645..824-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-littoralis_Contig1060.1.1 ID=mRNA_P-littoralis_Contig1060.1.1|Name=mRNA_P-littoralis_Contig1060.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=180bp|location=Sequence derived from alignment at P-littoralis_Contig1060:645..824- (Pylaiella littoralis U1_48)
ATGCAGAGCGTGTGTATAGTCTACGCGTGCCTGGCAGTGAAGCGGAACGC
CGGCATATTGGATAAGGAAAGCAAACTCGCTGCTGCGGCGAAAGGATATG
AGGAGATCGCCGTTCCAGGCTTCTTTAGGTGGGCACGGGACAACGATATC
GTGCTTCCTGCGTGGCTGACTGTGGAGAAG

Coding sequence (CDS) from alignment at P-littoralis_Contig1060:645..824-

>mRNA_P-littoralis_Contig1060.1.1 ID=mRNA_P-littoralis_Contig1060.1.1|Name=mRNA_P-littoralis_Contig1060.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=180bp|location=Sequence derived from alignment at P-littoralis_Contig1060:645..824- (Pylaiella littoralis U1_48)
ATGCAGAGCGTGTGTATAGTCTACGCGTGCCTGGCAGTGAAGCGGAACGC
CGGCATATTGGATAAGGAAAGCAAACTCGCTGCTGCGGCGAAAGGATATG
AGGAGATCGCCGTTCCAGGCTTCTTTAGGTGGGCACGGGACAACGATATC
GTGCTTCCTGCGTGGCTGACTGTGGAGAAG