mRNA_P-littoralis_Contig106.120.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig106.120.1
Unique NamemRNA_P-littoralis_Contig106.120.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig106.120.1 vs. uniprot
Match: D7G5I2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5I2_ECTSI)

HSP 1 Score: 248 bits (633), Expect = 2.960e-80
Identity = 131/140 (93.57%), Postives = 131/140 (93.57%), Query Frame = 1 
Query:  424 EKYVSLLGDGSVVSAGLDNKSKSYRIHLVADLPEGVRKEWRRTPIKRPKGRKTGRDRGAEHKFFEDRWPSEGGNVVELLRDSRHRIEAEAEAEVAAARTKRPRDCHVSAAEHERPEKRGGKREGAGRPCGSFGPKKLRQR 843
            EK VSLLGDGSVVSAGLDNKSKSYRIHLVADL EGVRKEWR TPIKRPKGRKTGRDRGAEHKFFED  PSEGGNVVE LRDSRHRIEAEAEAEVAAARTKRPRDCH SAAEH RPEKRGGKREGAGRP GSFGPKKLRQR
Sbjct:   15 EKCVSLLGDGSVVSAGLDNKSKSYRIHLVADLREGVRKEWRSTPIKRPKGRKTGRDRGAEHKFFEDWRPSEGGNVVERLRDSRHRIEAEAEAEVAAARTKRPRDCHASAAEHARPEKRGGKREGAGRPRGSFGPKKLRQR 154
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BLAST of mRNA_P-littoralis_Contig106.120.1 vs. uniprot
Match: A0A6H5JPF3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPF3_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 9.560e-8
Identity = 48/118 (40.68%), Postives = 58/118 (49.15%), Query Frame = 1 
Query:  484 SKSYRIHLVADLPEGVRKEWRRTPIKRPKGRKTGRDRGAEHKFFEDRWPSEGGNVVELLRDSRHRIEAEAEAEVAAARTKRPRDCHVSAAEHERPEKRGGKREGAGRPCGSFGPKKLR 837
            +K YR+ L ADL +G    WR   IK PKG+   RD  AE K+     PS       L  +   R   +        R KRPRDC  +A     P KR G  EGAGRP G+FG K+LR
Sbjct:   33 AKKYRLQLTADLSDGSSSMWRSDYIKYPKGQTKARDWSAEAKWAAAWRPSSSSGSAVLSTEDARRGSNDTPP---PPRGKRPRDCQPAAEILTPPPKRPGY-EGAGRPKGTFGRKRLR 146
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BLAST of mRNA_P-littoralis_Contig106.120.1 vs. uniprot
Match: A0A6H5JEX5_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEX5_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 4.750e-7
Identity = 48/118 (40.68%), Postives = 58/118 (49.15%), Query Frame = 1 
Query:  484 SKSYRIHLVADLPEGVRKEWRRTPIKRPKGRKTGRDRGAEHKFFEDRWPSEGGNVVELLRDSRHRIEAEAEAEVAAARTKRPRDCHVSAAEHERPEKRGGKREGAGRPCGSFGPKKLR 837
            +K YR+ L ADL +G    WR   IK PKG+   RD  AE K+     PS       L  +   R   +        R KRPRDC  +A     P KR G  EGAGRP G+FG K+LR
Sbjct:   33 AKKYRLQLTADLSDGSSSMWRSDYIKYPKGQTKARDWSAEAKWAAAWRPSSSSGSAVLSTEDARRGSNDTPP---PPRGKRPRDCQPAAEILTPPPKRPGY-EGAGRPKGTFGRKRLR 146
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig106.120.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G5I2_ECTSI2.960e-8093.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JPF3_9PHAE9.560e-840.68Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JEX5_9PHAE4.750e-740.68Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig106contigP-littoralis_Contig106:563096..563938 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size843
Hectar predicted targeting categoryother localisation
Exons1
Cds size441
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789394.4739692-UTR-P-littoralis_Contig106:563095..5634971680789394.4739692-UTR-P-littoralis_Contig106:563095..563497Pylaiella littoralis U1_48UTRP-littoralis_Contig106 563096..563497 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789394.4844549-CDS-P-littoralis_Contig106:563497..5639381680789394.4844549-CDS-P-littoralis_Contig106:563497..563938Pylaiella littoralis U1_48CDSP-littoralis_Contig106 563498..563938 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig106.120.1prot_P-littoralis_Contig106.120.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig106 563498..563938 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig106.120.1

>prot_P-littoralis_Contig106.120.1 ID=prot_P-littoralis_Contig106.120.1|Name=mRNA_P-littoralis_Contig106.120.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=147bp
MRHGVTSEKYVSLLGDGSVVSAGLDNKSKSYRIHLVADLPEGVRKEWRRT
PIKRPKGRKTGRDRGAEHKFFEDRWPSEGGNVVELLRDSRHRIEAEAEAE
VAAARTKRPRDCHVSAAEHERPEKRGGKREGAGRPCGSFGPKKLRQR
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mRNA from alignment at P-littoralis_Contig106:563096..563938+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig106.120.1 ID=mRNA_P-littoralis_Contig106.120.1|Name=mRNA_P-littoralis_Contig106.120.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=843bp|location=Sequence derived from alignment at P-littoralis_Contig106:563096..563938+ (Pylaiella littoralis U1_48)
GGGGTGGTTTGAAAAAAAAAAAAAAGTTGCCCATCGAATTAAAAAAAAAA
AAACACCACTGTAAAGCTCTCGCCAAGGGTGTTCGAATGAGCCATAGTTT
TTGGCGGGGTTCGCGCTGCGAGAAAAGTTATGGCCCTAATACCATCGTTG
TGAAGTGTACTTCACGCCACGAAAACCCACATATCTCAGCAACCACGCCG
AACCCCGCGTAAATTTTTGCAGCTATCGAAAGCTCTCGCCCACGCCTTTT
TTTTTCGCGGTGGAACCATTCCCCGAACCGGCGGGCAACGTCTGAAAAAA
ATTCAGAACCTCATTTTCAAATTTTTGCGGACAACGAGCCCCAGGTTGCA
CAAACAAAAACGTGTACTGTACCACGCAAGGTCATGTCGTCCACGTTCAG
CGATGAGACATGGCGTTACTTCGGAGAAGTATGTATCGCTTCTGGGAGAC
GGGAGTGTTGTCAGCGCGGGCCTAGACAACAAGAGCAAGTCGTATCGCAT
ACATCTTGTCGCGGACCTCCCTGAGGGCGTCAGGAAGGAGTGGAGGCGCA
CGCCGATCAAACGTCCAAAGGGCCGCAAGACGGGTCGCGACCGGGGTGCC
GAGCACAAGTTCTTCGAGGACCGGTGGCCGTCTGAGGGCGGCAACGTCGT
CGAGCTCCTGCGAGACTCCAGGCACCGCATTGAGGCGGAGGCAGAAGCGG
AGGTGGCGGCAGCTCGGACCAAGAGACCGCGGGACTGTCATGTCAGCGCC
GCCGAACATGAACGCCCCGAGAAGCGCGGCGGCAAGCGCGAAGGCGCAGG
CAGGCCATGCGGCAGCTTCGGCCCGAAGAAGCTACGCCAGAGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig106:563096..563938+

>mRNA_P-littoralis_Contig106.120.1 ID=mRNA_P-littoralis_Contig106.120.1|Name=mRNA_P-littoralis_Contig106.120.1|organism=Pylaiella littoralis U1_48|type=CDS|length=441bp|location=Sequence derived from alignment at P-littoralis_Contig106:563096..563938+ (Pylaiella littoralis U1_48)
ATGAGACATGGCGTTACTTCGGAGAAGTATGTATCGCTTCTGGGAGACGG
GAGTGTTGTCAGCGCGGGCCTAGACAACAAGAGCAAGTCGTATCGCATAC
ATCTTGTCGCGGACCTCCCTGAGGGCGTCAGGAAGGAGTGGAGGCGCACG
CCGATCAAACGTCCAAAGGGCCGCAAGACGGGTCGCGACCGGGGTGCCGA
GCACAAGTTCTTCGAGGACCGGTGGCCGTCTGAGGGCGGCAACGTCGTCG
AGCTCCTGCGAGACTCCAGGCACCGCATTGAGGCGGAGGCAGAAGCGGAG
GTGGCGGCAGCTCGGACCAAGAGACCGCGGGACTGTCATGTCAGCGCCGC
CGAACATGAACGCCCCGAGAAGCGCGGCGGCAAGCGCGAAGGCGCAGGCA
GGCCATGCGGCAGCTTCGGCCCGAAGAAGCTACGCCAGAGA
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