mRNA_P-littoralis_Contig106.118.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig106.118.1 vs. uniprot
Match: D8LJJ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJJ6_ECTSI) HSP 1 Score: 696 bits (1795), Expect = 6.700e-226 Identity = 435/825 (52.73%), Postives = 518/825 (62.79%), Query Frame = 1
Query: 1411 YRMEPVRDILSKAPGLRTWKEINYVARNVLSHHVAFQQMPALALERVASRLTATTVVRRGEVLAEHGEKVTGFLLLLRGSARVMGISKAREFHLNNFIHGDLGLVRAAEKQAMVDPPVSAAAMRSLAISPERRSRRDVRIIADELRTPNSGLDVVRFRHIPICLKTRIAAVCRLEVLPAFFELRRDEKDAKTHLVIIKGSISLQAVTKSNRFTMENLDMPASGLLKTLDVDSGLALEDWRASGLGPCAAVQFERQVLGEFPLSEESVQSVRAVTRRETTVAVVDSELYTRNLSRVNYSDSHSAICREVLAQLKRCPMGDQT-GVGGVEADMLCRLLKENPVLKKRISISCRPRIAGNFALRRYKAGEIVTDEEDFGDNLYIILEGLLEYAVQDTHRGVIDRALAKEVSITPGLRCVGVMTAGDFFAPESMLGKRKGRKPRTLASGSYRIRCSPDVQDGGVGGGGGAICLILPRGKIEAAVHRDHQVKRSL-----QTMRTTDVAT-------------AENSNMARSSGG--LGTVSFGGPGE---LKHRYLSDEKEEGGVLLGGEMGKKNGEKHSDDIPTDGDKPETGAGAPALG---GVAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGACLKGTAERADDGRRTKEKHAAFLTGVPLPHVAIIGELEHSPETPMDISSTIAELQDRRN-PPQGGTILLSAAAAGDFSEYDA--GVAGTSGRAAAHDGGGVCEGEGNGTIPAEDMSHSWYDTSLTPSVGNPSEDGLTSCLQQGEQSVN-----LLTAGAQSWAGASECSGG 3780
++ +PVR L+K PGLRTW+EI+Y+ARNVLSHHVAFQQM AL+LER+ASRLT TVV GEVL EHG+KVTGFL+LLRGSAR+M +SK I GD+ LVRAAEKQA + PV A+RSLA+ PERR+RRDV+ I +EL TP GLD+ RFRH+P CLKTRIAA RLEV PAF EL RDEKD KT+L I+KGSISLQAVT +NRFT+E LD+PA+G LK DVD+ L+LEDWRASGLGPCAA+ F+RQVLGE+P SEESV SVRAVTR TT AVVD+E+Y L+R NYSDSHSA+CREVLAQLKR P D GV G+EA+MLCRLLKENPVLK RI+ C PR+ G+ AL+RYK GE+VT+EEDFGD+LYIILEGLLEYAV+D+HRGVIDR+LAKEV I PGLRCVGVMTAGDFFAPESMLG+ KGR+PR LASGSYR+RCSPDVQDGG G G A C +LPRGK+EAAVHRDH +KRS Q+ + A + +N++ SS L VSFGGPGE L H L+ GG + GG G + D G A+G VAG GTAE + G E + FLTGVP H+ + + T IS++++ LQ P L S AG DA GV G+ A GGG+ EG GN E S S +D L S+GN S G Q + + N ++ A AQ W+ SEC G
Sbjct: 41 WQWQPVRRTLAKTPGLRTWREISYIARNVLSHHVAFQQMAALSLERIASRLTNRTVVAGGEVLVEHGKKVTGFLILLRGSARIMEVSKV--------IRGDVELVRAAEKQAGGEHPVGTRALRSLAVPPERRTRRDVKNIVNELSTPKGGLDIARFRHVPACLKTRIAAALRLEVWPAFSELIRDEKDPKTYLFIVKGSISLQAVTNANRFTVETLDIPAAGHLKNFDVDNALSLEDWRASGLGPCAAMHFDRQVLGEYPNSEESVLSVRAVTREGTTAAVVDTEVYANGLARENYSDSHSAVCREVLAQLKRFPSDDVVPGVAGLEAEMLCRLLKENPVLK-RINGPCFPRLIGSIALKRYKPGEVVTEEEDFGDSLYIILEGLLEYAVKDSHRGVIDRSLAKEVGIAPGLRCVGVMTAGDFFAPESMLGRSKGRRPRVLASGSYRVRCSPDVQDGGAGSDG-ATCFVLPRGKVEAAVHRDHHLKRSRLFQSNQSNHNNNSAVDSKGLTMSPIAGHRQTANISGSSSNDELARVSFGGPGEPPGLAHLSLAG----GGAMEGGRRNPGGGGR---------DVAAERVGMAAVGESKNVAGGNALAEDCGVGGSNLPAPSSMQVVA-------------------------GASAGTAEASGGGGGLTEGRS-FLTGVPSTHIKPERLVNQATPTGA-ISTSVSNLQGMGGFYPSDSATLASGVTAGGRGGDDADFGV----GKPPAG-GGGIGEGGGNAKQAGE-ASQSCHDGPLASSIGNSSVAGSID-FPQHQNATNHSTEAVIAAAAQPWSDTSECCSG 808
BLAST of mRNA_P-littoralis_Contig106.118.1 vs. uniprot
Match: A0A6H5KBT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBT9_9PHAE) HSP 1 Score: 635 bits (1639), Expect = 3.480e-204 Identity = 399/789 (50.57%), Postives = 479/789 (60.71%), Query Frame = 1
Query: 1525 MPALALERVASRLTATTVVRRGEVLAEHGEKVTGFLLLLRGSARVMGISKAREFHLNNFIHGDLGLVRAAEKQAMVDPPVSAAAMRSLAISPERRSRRDVRIIADELRTPNSGLDVVRFRHIPICLKTRIAAVCRLEVLPAFFELRRDEKDAKTHLVIIKGSISLQAVTKSNRFTMENLDMPASGLLKTLDVDSGLALEDWRASGLGPCAAVQFERQVLGEFPLSEESVQSVRAVTRRETTVAVVDSELYTRNLSRVNYSDSHSAICREVLAQLKRCPMGDQT-GVGGVEADMLCRLLKENPVLKKRISISCRPRIAGNFALRRYKAGEIVTDEEDFGDNLYIILEGLLEYAVQDTHRGVIDRALAKEVSITPGLRCVGVMTAGDFFAPESMLGKRKGRKPRTLASGSYRIRCSPDVQDGGVGGGGGAICLILPRGKIEAAVHRDHQVKRS---------------LQTMRTTDVATAENSNMARSSGG----LGTVSFGGPGELKH-RYLSDEKEEGGVLLGGEMGKKNGEKHSDDIPTDGDKPETGAGAPALG-----------GVAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGACLKGTAERADDGRRTKEKHAAFLTGVPLPHVAIIGELEHSPETPMDISSTIAELQDRRNP-PQGGTILLSAAAAGDFSEYDAGVAGTSGRAAAHDGGGVCEGEGNGTIPAEDMSHSWYDTSLTPSVGNPSEDGLTSCLQQ----GEQSVNLLTAGAQSWAGASECSGG 3780
M AL+LER+ASRLT TVV GEVL EHG+KVTGFL+LLRGSAR+M +SKA I GD+ LVRAAEK+A + PV A AMRSLA+ PERR++RDV+ I +E+ TP GLD+ RFRHIP CLKTR+AA RLEV PAF EL R EKD KT+L I+KGS+SLQAVTK+NRFT+E LD+PA+G LK+LDVD+ L+LEDWRASGLGPCAA+ F+RQVLGE+P SEESV SVRAVTR ETT AVVD+E+Y L+R NYSDSHSA+CREVLAQLKRCP GV G+EA+MLCRLLKENPVLK RI+ C PR+ G+ AL+RYK GE+VT+EEDFGD+LYIILEG LEYAV+D+HRGVIDR+LAKEV I PGLRCVGVMTAGDFFAPESMLG+ KGR+PR LASGSYR+RCSPD+QDGG G G A C +LPRGK+EAAVHRDH +KR+ + + T + AE+ A SG L V FGGPGE YLS L GGE P +G + + G G G XXXX G AE A G + AFLTGVP H+ + + T +S+ +++LQ P L S AG + +AG+ GGG EG AE+ S S +D L S+ N S T Q + ++ A Q W+ SEC GG
Sbjct: 1 MAALSLERIASRLTNRTVVAGGEVLIEHGKKVTGFLILLRGSARIMEVSKA--------IRGDVELVRAAEKRASGEHPVGARAMRSLAVPPERRTQRDVKNIVNEMSTPKGGLDIARFRHIPACLKTRLAAALRLEVWPAFSELIRHEKDPKTYLFIVKGSVSLQAVTKANRFTVETLDIPAAGHLKSLDVDNALSLEDWRASGLGPCAAMHFDRQVLGEYPNSEESVLSVRAVTREETTAAVVDTEIYADGLARENYSDSHSAVCREVLAQLKRCPSDTVVPGVAGLEAEMLCRLLKENPVLK-RINGPCFPRLTGSIALKRYKPGEVVTEEEDFGDSLYIILEGRLEYAVKDSHRGVIDRSLAKEVGIAPGLRCVGVMTAGDFFAPESMLGRSKGRRPRVLASGSYRVRCSPDIQDGGAGSEG-ATCFVLPRGKVEAAVHRDHNMKRARLSQSNQSNHNNNSAVDSKGLTMSSIAEHQQTANISGSSKVELARVCFGGPGEPPRLAYLS--------LAGGE-------------PVEGGRRQPGGGXXXXXXXXXXXXXXXXGXXXXXXXRDVATERSGTDAVGEPKNVAGGNAFAEDCGVGGSNLPTPSSMQVVAGASAGAAE-ASGGGGALTQGRAFLTGVPSTHIKTERPVNQATPTGA-VSTIVSDLQGMEGSCPSDSATLASGVTAGGWGGDNAGLC----VGKLPTGGGSSAEEGGKAKQAEEASQSCHDGPLASSIANSSVTDSTDYPQNLSATDHSTEAVIAAAEQPWSDTSECCGG 752 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig106.118.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig106.118.1 >prot_P-littoralis_Contig106.118.1 ID=prot_P-littoralis_Contig106.118.1|Name=mRNA_P-littoralis_Contig106.118.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=1775bp MGESTAGFDEKDCAVLLRLLKIPWRQRESEDVFEIANSLYRATFIRQLDVback to top mRNA from alignment at P-littoralis_Contig106:472274..492609+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig106.118.1 ID=mRNA_P-littoralis_Contig106.118.1|Name=mRNA_P-littoralis_Contig106.118.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=20336bp|location=Sequence derived from alignment at P-littoralis_Contig106:472274..492609+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig106:472274..492609+ >mRNA_P-littoralis_Contig106.118.1 ID=mRNA_P-littoralis_Contig106.118.1|Name=mRNA_P-littoralis_Contig106.118.1|organism=Pylaiella littoralis U1_48|type=CDS|length=5325bp|location=Sequence derived from alignment at P-littoralis_Contig106:472274..492609+ (Pylaiella littoralis U1_48)back to top |