mRNA_P-littoralis_Contig1054.34.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1054.34.1
Unique NamemRNA_P-littoralis_Contig1054.34.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1054.34.1 vs. uniprot
Match: Q8QNP2_ESV1K (EsV-1-19 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNP2_ESV1K)

HSP 1 Score: 246 bits (629), Expect = 1.080e-79
Identity = 118/170 (69.41%), Postives = 135/170 (79.41%), Query Frame = 2 
Query:  146 LKKIQGWREGFGNESRECHTAFMWDGLVYYISKSDKPKTSHEWELLLTKQRFLECVICFEGTTKSEDATQCVR*LQL--------EAVPECPVCKAFDMKTYVRRRNVYAAQVLPQLGITMADLKKSKDLCANQIKELTGFDHLDDLIGKAMAVAGEKVYDVRDQLVSQR 631
            + KIQ WREGFGNESRECHT F+WD L+YYIS+SDKPKT  EWELLL+KQ+ LECVICFE  T S DA  C+    +        +++PECPVCKAFDMK+YVR R VYAAQ+LPQLGI MAD+KKSKD+CA+QIKELTGFDHL+DLI  AM  AGEKVYDVRDQL   R
Sbjct:   55 IAKIQEWREGFGNESRECHTIFVWDSLIYYISESDKPKTLKEWELLLSKQQSLECVICFERITASADARPCLTCHAMCCADCNWKQSLPECPVCKAFDMKSYVRNRGVYAAQLLPQLGIPMADVKKSKDMCASQIKELTGFDHLEDLIDSAMVAAGEKVYDVRDQLTLSR 224
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1054.34.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Q8QNP2_ESV1K1.080e-7969.41EsV-1-19 n=1 Tax=Ectocarpus siliculosus virus 1 (i... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1054contigP-littoralis_Contig1054:43047..43677 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size631
Hectar predicted targeting categoryother localisation
Exons1
Cds size324
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789388.3926673-CDS-P-littoralis_Contig1054:43046..433701680789388.3926673-CDS-P-littoralis_Contig1054:43046..43370Pylaiella littoralis U1_48CDSP-littoralis_Contig1054 43047..43370 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789388.4044104-UTR-P-littoralis_Contig1054:43370..436771680789388.4044104-UTR-P-littoralis_Contig1054:43370..43677Pylaiella littoralis U1_48UTRP-littoralis_Contig1054 43371..43677 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1054.34.1prot_P-littoralis_Contig1054.34.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1054 43047..43370 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1054.34.1

>prot_P-littoralis_Contig1054.34.1 ID=prot_P-littoralis_Contig1054.34.1|Name=mRNA_P-littoralis_Contig1054.34.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=108bp
MDSVRFCAAKLGYTVIDRKITSKVELEVIARVCAKDKTKILVFSDEDDVK
KDSGVARRVRKRITGVSHGLHVGWPGLLHQQVGQAQDVARMGAFAHQTEI
PRVCHLL*
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mRNA from alignment at P-littoralis_Contig1054:43047..43677+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1054.34.1 ID=mRNA_P-littoralis_Contig1054.34.1|Name=mRNA_P-littoralis_Contig1054.34.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=631bp|location=Sequence derived from alignment at P-littoralis_Contig1054:43047..43677+ (Pylaiella littoralis U1_48)
ATGGATTCCGTCAGGTTTTGCGCGGCCAAGCTCGGCTACACCGTAATCGA
CAGAAAGATAACTTCAAAAGTGGAGCTCGAAGTAATCGCGCGCGTCTGTG
CGAAGGACAAGACCAAGATTTTGGTGTTCTCGGACGAAGATGATGTTAAA
AAAGATTCAGGGGTGGCGCGAAGGGTTCGGAAACGAATCACGGGAGTGTC
ACACGGCCTTCATGTGGGATGGCCTGGTCTACTACATCAGCAAGTCGGAC
AAGCCCAAGACGTCGCACGAATGGGAGCTTTTGCTCACCAAACAGAGATT
CCTAGAGTGTGTCATTTGCTTTGAAGGAACAACGAAATCGGAAGATGCCA
CGCAATGTGTGCGCTGATTGCAGTTGGAAGCAGTCCCGGAATGCCCCGTT
TGCAAAGCCTTCGATATGAAAACGTACGTGCGTCGCCGGAATGTTTACGC
GGCCCAGGTGCTTCCGCAGCTGGGTATCACGATGGCCGACCTGAAAAAGT
CGAAAGATTTGTGCGCGAACCAAATCAAAGAGCTGACCGGGTTTGACCAT
CTAGATGACTTGATTGGCAAAGCAATGGCGGTGGCTGGGGAGAAGGTTTA
CGACGTTCGTGACCAGCTGGTGTCGCAGAGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1054:43047..43677+

>mRNA_P-littoralis_Contig1054.34.1 ID=mRNA_P-littoralis_Contig1054.34.1|Name=mRNA_P-littoralis_Contig1054.34.1|organism=Pylaiella littoralis U1_48|type=CDS|length=324bp|location=Sequence derived from alignment at P-littoralis_Contig1054:43047..43677+ (Pylaiella littoralis U1_48)
ATGGATTCCGTCAGGTTTTGCGCGGCCAAGCTCGGCTACACCGTAATCGA
CAGAAAGATAACTTCAAAAGTGGAGCTCGAAGTAATCGCGCGCGTCTGTG
CGAAGGACAAGACCAAGATTTTGGTGTTCTCGGACGAAGATGATGTTAAA
AAAGATTCAGGGGTGGCGCGAAGGGTTCGGAAACGAATCACGGGAGTGTC
ACACGGCCTTCATGTGGGATGGCCTGGTCTACTACATCAGCAAGTCGGAC
AAGCCCAAGACGTCGCACGAATGGGAGCTTTTGCTCACCAAACAGAGATT
CCTAGAGTGTGTCATTTGCTTTGA
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