mRNA_P-littoralis_Contig1054.17.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1054.17.1
Unique NamemRNA_P-littoralis_Contig1054.17.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1054.17.1 vs. uniprot
Match: A0A6H5K2U9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2U9_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 9.890e-18
Identity = 46/83 (55.42%), Postives = 59/83 (71.08%), Query Frame = 1 
Query:   10 NATIRVDHASKRASLVDVAQMVLDCGEDVAKAALHKLLGSTADVDEDCPR*QINNRGGFTQVADVDFLKEIVWLLRPEIADDI 258
            +A IRVD AS + S+ DVA++VL C ++ A+ A+ KLLG+T+D D D  R QINNRG  T VA V+ L EIVWLL   IADD+
Sbjct:    2 DAVIRVDRASNKGSVTDVAKLVLKCDDEEAEKAVRKLLGATSDTDRDFLRVQINNRGRLTLVAGVNMLVEIVWLLPGVIADDV 84
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BLAST of mRNA_P-littoralis_Contig1054.17.1 vs. uniprot
Match: B5LWM3_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWM3_9PHYC)

HSP 1 Score: 57.8 bits (138), Expect = 2.660e-6
Identity = 35/102 (34.31%), Postives = 57/102 (55.88%), Query Frame = 1 
Query:   10 NATIRVDHASKRASLVDVAQMVLDCGEDVAKAALHKL----LGSTADVDEDCPR*QINNRGGFTQVADVDFLKEIVWLLRPEIADDIFTGRCATRCVNCVAG 303
            NATIR+D+A+++ S++DV +MVL C    A  A  +L    L S A+    C   +IN +G  T VA+   L EI++ L  ++A + F  + A++    + G
Sbjct:   10 NATIRIDNATQKGSVIDVIRMVLRCDASSANTAFRRLKDDMLKSRAEFGAACSHLRINGKGRLTPVANAKTLVEIIFSLPGKLARE-FRRKSASQICRLLGG 110
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1054.17.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K2U9_9PHAE9.890e-1855.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
B5LWM3_9PHYC2.660e-634.31Uncharacterized protein n=1 Tax=Feldmannia species... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1054contigP-littoralis_Contig1054:26329..27002 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LP49
Model size674
Max annot lvl2880.D8LP49|-
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.94e-07
EggNOG OGs2EUDG@1|root,2SWJG@2759|Eukaryota
Cds size405
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789388.5947218-UTR-P-littoralis_Contig1054:26328..265971680789388.5947218-UTR-P-littoralis_Contig1054:26328..26597Pylaiella littoralis U1_48UTRP-littoralis_Contig1054 26329..26597 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789388.6062107-CDS-P-littoralis_Contig1054:26597..270021680789388.6062107-CDS-P-littoralis_Contig1054:26597..27002Pylaiella littoralis U1_48CDSP-littoralis_Contig1054 26598..27002 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1054.17.1prot_P-littoralis_Contig1054.17.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1054 26598..27002 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1054.17.1

>prot_P-littoralis_Contig1054.17.1 ID=prot_P-littoralis_Contig1054.17.1|Name=mRNA_P-littoralis_Contig1054.17.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=135bp
MCHSVCKLCGGDARLVGDAEERHIAMREASLRAKAQAGKKDNMPASFELL
GVQDQQELAKKMVEQFPKSRDRNIQRKALELEEAKISLKCTRCDTVIYIY
QSLEELEITLDPRAQVYILDTIAQITKPDISEVV*
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mRNA from alignment at P-littoralis_Contig1054:26329..27002+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1054.17.1 ID=mRNA_P-littoralis_Contig1054.17.1|Name=mRNA_P-littoralis_Contig1054.17.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=674bp|location=Sequence derived from alignment at P-littoralis_Contig1054:26329..27002+ (Pylaiella littoralis U1_48)
AGCCTCGAAAATGCTACTATTCGCGTCGACCATGCCTCCAAAAGGGCATC
ACTCGTCGACGTGGCACAAATGGTATTGGACTGTGGCGAAGACGTAGCGA
AAGCTGCGCTGCACAAGCTTCTCGGCTCAACCGCTGACGTGGACGAAGAC
TGTCCTAGATAGCAGATAAACAACAGAGGAGGGTTCACGCAAGTCGCGGA
CGTTGATTTTCTGAAAGAGATCGTTTGGTTGCTGCGTCCTGAAATCGCTG
ATGACATATTCACCGGAAGATGTGCCACTCGGTGTGTAAATTGTGTGGCG
GGGACGCAAGGCTGGTGGGCGATGCGGAGGAGCGTCACATCGCTATGCGT
GAGGCGAGCCTTCGCGCCAAGGCTCAGGCGGGTAAGAAGGACAACATGCC
GGCCAGCTTTGAACTTTTAGGGGTACAAGATCAACAAGAGCTCGCAAAGA
AAATGGTGGAACAGTTCCCGAAGAGCCGGGATCGAAACATCCAGCGGAAG
GCCCTTGAACTAGAAGAAGCGAAGATCTCGCTAAAATGCACACGTTGCGA
CACTGTTATCTATATATACCAATCCTTAGAGGAGCTTGAGATCACGCTCG
ATCCGCGCGCTCAAGTTTACATTTTAGATACGATAGCCCAAATCACCAAA
CCAGACATTAGCGAGGTGGTGTAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1054:26329..27002+

>mRNA_P-littoralis_Contig1054.17.1 ID=mRNA_P-littoralis_Contig1054.17.1|Name=mRNA_P-littoralis_Contig1054.17.1|organism=Pylaiella littoralis U1_48|type=CDS|length=405bp|location=Sequence derived from alignment at P-littoralis_Contig1054:26329..27002+ (Pylaiella littoralis U1_48)
ATGTGCCACTCGGTGTGTAAATTGTGTGGCGGGGACGCAAGGCTGGTGGG
CGATGCGGAGGAGCGTCACATCGCTATGCGTGAGGCGAGCCTTCGCGCCA
AGGCTCAGGCGGGTAAGAAGGACAACATGCCGGCCAGCTTTGAACTTTTA
GGGGTACAAGATCAACAAGAGCTCGCAAAGAAAATGGTGGAACAGTTCCC
GAAGAGCCGGGATCGAAACATCCAGCGGAAGGCCCTTGAACTAGAAGAAG
CGAAGATCTCGCTAAAATGCACACGTTGCGACACTGTTATCTATATATAC
CAATCCTTAGAGGAGCTTGAGATCACGCTCGATCCGCGCGCTCAAGTTTA
CATTTTAGATACGATAGCCCAAATCACCAAACCAGACATTAGCGAGGTGG
TGTAA
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