mRNA_P-littoralis_Contig1054.15.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1054.15.1
Unique NamemRNA_P-littoralis_Contig1054.15.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1054.15.1 vs. uniprot
Match: Q8QN79_ESV1K (EsV-1-211 n=2 Tax=root TaxID=1 RepID=Q8QN79_ESV1K)

HSP 1 Score: 172 bits (437), Expect = 4.330e-46
Identity = 96/164 (58.54%), Postives = 123/164 (75.00%), Query Frame = 3
Query:  513 PVKENRSSKPFWFDHGTDEERRAYVSIEA-------KKSMVFGEIDIYDTCKQKLESVGRFATLDEIEYADRMKDVQRRASRRSDNLLTPAP-VDAS--AIAVATPVDGTIDPATALLIATHKCTKDVRRRETSICNEAAKLGIAVGEKAGQVGTVAKRLYIDQ 974
            P K+ R++ P WF++ T EE+RAY+SIEA       KK++V GEID++ TCK++L+SVG+F   DEIE+ADR+KDVQRRA+R  DN++T AP VD S  ++ VA PVD TIDP T LL AT KC+  VR  ETSIC EA K+GI+VGEKAGQVG V KRLY ++
Sbjct:  288 PAKKQRAAMPAWFEYATAEEKRAYISIEATTSIVLAKKALVLGEIDVFKTCKEELKSVGQFDQRDEIEFADRIKDVQRRATR-VDNMITAAPTVDTSPVSVCVAMPVDDTIDPETGLLTATPKCSPSVRGPETSICVEAGKMGISVGEKAGQVGKVVKRLYSER 450          
BLAST of mRNA_P-littoralis_Contig1054.15.1 vs. uniprot
Match: Q8QN80_ESV1K (EsV-1-210 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QN80_ESV1K)

HSP 1 Score: 160 bits (406), Expect = 1.520e-41
Identity = 90/157 (57.32%), Postives = 116/157 (73.89%), Query Frame = 3
Query:  510 PPVKENRSSKPFWFDHGTDEERRAYVSIEAKKSMVFGEIDIYDTCKQKLESVGRFATLDEIEYADRMKDVQRRASRRSDNLL-----TPAPVDASAIAVATPVDGTIDPATALLIATHKCTKDVRRRETSICNEAAKLGIAVGEKAGQVGTVAKRLY 965
            PP K    S P WF++ T +++ AYV+ + KKS+V  EI++++ CK  LESVG+FA  DEIEYADR++D QRRASR +DNLL     +PA V  SA+ +ATP+D +IDP T +LIATHK +  VR  ETSIC EAA+LGI+ GE+AGQVG VAKRLY
Sbjct:  303 PPKKHK--SLPEWFEYATSDQKSAYVAAKVKKSVVVTEIEMHEICKVGLESVGQFAGRDEIEYADRIRDTQRRASR-ADNLLGAPAPSPAVVGDSAMLIATPIDNSIDPETGMLIATHKVSASVRGPETSICVEAARLGISTGERAGQVGKVAKRLY 456          
BLAST of mRNA_P-littoralis_Contig1054.15.1 vs. uniprot
Match: A0A6H5K200_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K200_9PHAE)

HSP 1 Score: 156 bits (394), Expect = 7.270e-40
Identity = 90/164 (54.88%), Postives = 113/164 (68.90%), Query Frame = 1
Query:    1 MNNITIDASTGDIVVKSMTKCIMPNLHDSSILKSVRRILEDNDGPKMSTRLINGRQMSIATLGLCYDILEKMNGPNWRKWRQESEQAFNHALRERVEHVRSSAK------RSNPSHGNSRFARVETKAVVRQKALRSINIDGSVRIDEASGRASDLVNSFRGCK 474
            +NNI IDAS+GD+ VKSM K IMPNL +  ILK+V R+L D +GPKMSTRL+NGR    ATL LCY+IL+KM+GP WRKWR+ES  AF  AL ERVE VRSS++      +S P     +   + T   V QKALRSINI+GSVRID+  G+ S +  +   C+
Sbjct:    5 INNIVIDASSGDVAVKSMIKNIMPNLSEGGILKTVHRVLGDYNGPKMSTRLMNGRLACAATLELCYEILDKMSGPPWRKWREESGNAFKEALCERVESVRSSSQTEQFQLQSPPQPQPPQKVGITT--AVLQKALRSININGSVRIDDGCGKESIIDTTRLVCR 166          
BLAST of mRNA_P-littoralis_Contig1054.15.1 vs. uniprot
Match: D8LPL9_ECTSI (EsV-1-210 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPL9_ECTSI)

HSP 1 Score: 155 bits (392), Expect = 1.520e-39
Identity = 89/156 (57.05%), Postives = 115/156 (73.72%), Query Frame = 3
Query:  513 PVKENRSSKPFWFDHGTDEERRAYVSIEAKKSMVFGEIDIYDTCKQKLESVGRFATLDEIEYADRMKDVQRRASRRSDNLL-TPAP----VDASAIAVATPVDGTIDPATALLIATHKCTKDVRRRETSICNEAAKLGIAVGEKAGQVGTVAKRLY 965
            P K+++S  P WF++ T +++ AYV+ + KKS+V  E+++++ CK  LESVG+FA  DEIEYADR++D QRRASR +DNLL  PAP    V  S+  +ATP D +IDP T  LIATHK +  VR  ETSIC EAAKLGI+ GE+AGQVG VAKRLY
Sbjct:  303 PTKKHKSL-PEWFEYATSDQKSAYVAAKVKKSVVVTELEMHEVCKVGLESVGQFAGRDEIEYADRIRDTQRRASR-ADNLLGAPAPSPGDVGDSSTLIATPFDNSIDPETGKLIATHKVSASVRGPETSICVEAAKLGISTGERAGQVGKVAKRLY 456          
BLAST of mRNA_P-littoralis_Contig1054.15.1 vs. uniprot
Match: A0A6H5L5N7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5N7_9PHAE)

HSP 1 Score: 153 bits (387), Expect = 8.120e-38
Identity = 88/159 (55.35%), Postives = 109/159 (68.55%), Query Frame = 1
Query:    1 MNNITIDASTGDIVVKSMTKCIMPNLHDSSILKSVRRILEDNDGPKMSTRLINGRQMSIATLGLCYDILEKMNGPNWRKWRQESEQAFNHALRERVEHVRSSAKRSNPSHGNSRFA----RVETKAVVRQKALRSINIDGSVRIDEASGRASDLVNSFR 465
            +NNI IDAS+GD+ VKSM K IMPNL +S ILK+V R+L D +GPKMSTRL+NGR    ATL LC++IL+ M GP WRKWR ES  AF  ALRERVE VRS+++                +V  K  V Q ALRSINI GSVRID+  G+AS ++++ R
Sbjct:    5 INNIVIDASSGDVAVKSMIKNIMPNLSESGILKTVHRVLGDCNGPKMSTRLMNGRLACAATLELCFEILDTMTGPPWRKWRSESGNAFKGALRERVESVRSASQTEQLXXXXXXXXXXPQQVGIKTAVLQNALRSINIHGSVRIDDGLGKAS-IIDTVR 162          
BLAST of mRNA_P-littoralis_Contig1054.15.1 vs. uniprot
Match: A0A6H5JC19_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC19_9PHAE)

HSP 1 Score: 147 bits (370), Expect = 3.130e-37
Identity = 80/153 (52.29%), Postives = 106/153 (69.28%), Query Frame = 3
Query:  513 PVKENRSSKPFWFDHGTDEERRAYVSIEAKKSMVFGEIDIYDTCKQKLESVGRFATLDEIEYADRMKDVQRRASRRSDNLLTPAPVDA--SAIAVATPVDGTIDPATALLIATHKCTKDVRRRETSICNEAAKLGIAVGEKAGQVGTVAKRLY 965
            P K+ RS  PFWF+  + E++R YVS+ A K+M   ++D+  T K +L+SV +F   D IE+ADR+KD+Q RA   S N+L   P+DA  S +AVA PV+ +IDP T L IAT  C++ VR  ETSICNEAAK+G  +GEKAGQVG +AK LY
Sbjct:  166 PAKKQRSEAPFWFNFASGEQKRDYVSVMANKAMTLEQMDLCKTLKDELQSVNQFTGRDSIEFADRIKDIQMRALAPS-NMLAAVPMDADNSIVAVARPVNDSIDPETGLRIATATCSESVRGPETSICNEAAKMGFKLGEKAGQVGKMAKSLY 317          
BLAST of mRNA_P-littoralis_Contig1054.15.1 vs. uniprot
Match: B5LWM4_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWM4_9PHYC)

HSP 1 Score: 146 bits (368), Expect = 4.350e-37
Identity = 83/153 (54.25%), Postives = 106/153 (69.28%), Query Frame = 3
Query:  516 VKENRSSK-PFWFDHGTDEERRAYVSIEAKKSMVFGEIDIYDTCKQKLESVGRFATLDEIEYADRMKDVQRRASRRSDNLLTPAPVDASAI--AVATPVDGTIDPATALLIATHKCTKDVRRRETSICNEAAKLGIAVGEKAGQVGTVAKRLY 965
            VKE RS + P WF + T EE+RA+ S    K++V  E+++YD CK KLESVG+F T D IE+ DR++D QRRA R   N++T  PVD + +  AVA PVD TID AT L +AT +C++ VR  ETSICNEAAKLGI VGEK G++G    R Y
Sbjct:  165 VKELRSGEEPSWFKNATAEEKRAFASTMVNKAIVSEEVEMYDFCKAKLESVGQFTTRDMIEFGDRVRDAQRRALRAG-NMMTSTPVDDTVVISAVARPVDDTIDSATGLPLATPECSESVRGVETSICNEAAKLGICVGEKGGEIGKELIRRY 316          
BLAST of mRNA_P-littoralis_Contig1054.15.1 vs. uniprot
Match: A0A6H5JJP2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJP2_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 1.700e-27
Identity = 77/155 (49.68%), Postives = 98/155 (63.23%), Query Frame = 1
Query:    1 MNNITIDASTGDIVVKSMTKCIMPNLHDSSILKSVRRILEDNDGPKMSTRLINGRQMSIATLGLCYDILEKMNGPNWRKWRQESEQAFNHALRERVEHVRSSAK--RSNPSHGNSRFARVE---TKAVVRQKALRSINIDGSVRIDEASGRASDL 450
            M+ I IDA+TG + VK++   IMP LH SS+LK V R LED+ G  M T LINGR    AT+ LC  IL++M G  W +WRQ S   F  ALRERV  V SS +  +++P    +    VE   TKAV  +KALR++NI GSVR+DE SGR S +
Sbjct:    1 MDTIMIDATTGVVGVKTLIWHIMPQLHSSSVLKGVHRALEDS-GASMDTTLINGRFTKTATVDLCCSILDRMKGNQWDQWRQSSGLVFKRALRERVASVVSSGQVEQAHPPVQQAEEQHVEGVGTKAVALRKALRAMNIQGSVRVDERSGRVSGI 154          
BLAST of mRNA_P-littoralis_Contig1054.15.1 vs. uniprot
Match: A0A6H5JG13_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG13_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 5.370e-22
Identity = 62/156 (39.74%), Postives = 88/156 (56.41%), Query Frame = 1
Query:    1 MNNITIDASTGDIVVKSMTKCIMPNLHDSSILKSVRRILEDNDGPKMSTRLINGRQMSIATLGLCYDILEKMNGPNWRKWRQESEQAFNHALRERVEHVRSSAKRSNPSHGNSRFARV--------ETKAVVRQKALRSINIDGSVRIDEASGRAS 444
            M+NI +DA+ GD+ V SM K   P LH  S+L SVR  +++ DGP ++ +++ GR  ++A+L  C  IL+ M GP W  WR     +F  +L + V          N   G ++ A          ETK    +KA R++NIDGSVRIDEASG+AS
Sbjct:    1 MDNIVVDAA-GDVGVSSMIKAAKPELHSGSVLCSVRSAMKNFDGPGLTPKMVKGRTTTMASLDTCKYILDNMPGPRWVMWRSTQGNSFKESLTQHVAATHVQGVEDNVVEGVAQAAEAAEVEQEVAETKGSTLKKAFRTLNIDGSVRIDEASGKAS 155          
BLAST of mRNA_P-littoralis_Contig1054.15.1 vs. uniprot
Match: A0A6H5L807_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L807_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 1.440e-10
Identity = 31/64 (48.44%), Postives = 47/64 (73.44%), Query Frame = 3
Query:  537 KPFWFDHGTDEERRAYVSIEAKKSMVFGEIDIYDTCKQKLESVGRFATLDEIEYADRMKDVQRR 728
            +P WF+H + + +RAY S+E +K + FGEIDI  +CK++LES+G F  LD  E+AD ++ +QRR
Sbjct:  357 EPSWFEHASVDLKRAYASMEVRKMIAFGEIDILKSCKEELESIGCFGELDRHEFADGIRRIQRR 420          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1054.15.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
Q8QN79_ESV1K4.330e-4658.54EsV-1-211 n=2 Tax=root TaxID=1 RepID=Q8QN79_ESV1K[more]
Q8QN80_ESV1K1.520e-4157.32EsV-1-210 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
A0A6H5K200_9PHAE7.270e-4054.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LPL9_ECTSI1.520e-3957.05EsV-1-210 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5L5N7_9PHAE8.120e-3855.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JC19_9PHAE3.130e-3752.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
B5LWM4_9PHYC4.350e-3754.25Uncharacterized protein n=1 Tax=Feldmannia species... [more]
A0A6H5JJP2_9PHAE1.700e-2749.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JG13_9PHAE5.370e-2239.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L807_9PHAE1.440e-1048.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1054contigP-littoralis_Contig1054:25161..26192 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LPL9
Model size1015
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.75e-31
EggNOG OGs2EUDG@1|root,2SWJG@2759|Eukaryota
Cds size693
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789388.5387342-CDS-P-littoralis_Contig1054:25160..255031680789388.5387342-CDS-P-littoralis_Contig1054:25160..25503Pylaiella littoralis U1_48CDSP-littoralis_Contig1054 25161..25503 +
1680789388.5512395-CDS-P-littoralis_Contig1054:25520..258701680789388.5512395-CDS-P-littoralis_Contig1054:25520..25870Pylaiella littoralis U1_48CDSP-littoralis_Contig1054 25521..25870 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789388.5591242-UTR-P-littoralis_Contig1054:25870..261921680789388.5591242-UTR-P-littoralis_Contig1054:25870..26192Pylaiella littoralis U1_48UTRP-littoralis_Contig1054 25871..26192 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1054.15.1prot_P-littoralis_Contig1054.15.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1054 25161..25870 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1054.15.1

>prot_P-littoralis_Contig1054.15.1 ID=prot_P-littoralis_Contig1054.15.1|Name=mRNA_P-littoralis_Contig1054.15.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=231bp
MNNITIDASTGDIVVKSMTKCIMPNLHDSSILKSVRRILEDNDGPKMSTR
LINGRQMSIATLGLCYDILEKMNGPNWRKWRQESEQAFNHALRERVEHVR
SSAKRSNPSHGNSRFARVETKAVVRQKALRSINIDGSVRIDEASGRASDL
VNSFRGCKRRQDQRRDHRPALRSRRIGQASHFGSTTERMKRGGPMFRLRL
RKAWSLEKLISTTLANRNWSPWGGSPPSTK*
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mRNA from alignment at P-littoralis_Contig1054:25161..26192+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1054.15.1 ID=mRNA_P-littoralis_Contig1054.15.1|Name=mRNA_P-littoralis_Contig1054.15.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1032bp|location=Sequence derived from alignment at P-littoralis_Contig1054:25161..26192+ (Pylaiella littoralis U1_48)
ATGAACAACATCACGATCGACGCTTCCACAGGAGACATTGTGGTGAAAAG CATGACCAAATGCATCATGCCGAATTTGCACGACAGCAGTATTCTTAAGT CAGTGCGCCGCATACTCGAGGACAATGATGGCCCCAAAATGTCCACGCGT CTCATAAATGGCAGACAGATGTCTATTGCCACGCTTGGGTTGTGCTATGA CATCCTTGAAAAAATGAACGGCCCCAACTGGCGCAAGTGGCGTCAGGAGT CGGAACAGGCGTTCAACCACGCCCTGCGTGAGCGTGTTGAGCACGTTCGT TCCTCAGCCAAACGCAGCAACCCCAGCCACGGGAACAGCAGATGTAAGAA AATACTGCAGTCGCGCGGGTGGAGACAAAGGCGGTTGTTCGACAGAAAGC TCTTCGGTCCATCAACATCGATGGCTCTGTCAGGATTGACGAGGCCAGTG GCAGAGCGTCTGACCTGGTGAACAGCTTTCGTGGATGTAAGCGACGCCAA GACCAACGTCGAGATCATCGACCCGCCCTCCGGTCAAGGAGAATCGGTCA AGCAAGCCATTTTGGTTCGACCACGGAACGGATGAAGAGAGGAGGGCCTA TGTTTCGATTGAGGCTAAGAAAAGCATGGTCTTTGGAGAAATTGATATCT ACGACACTTGCAAACAGAAACTGGAGTCCGTGGGGCGGTTCGCCACCCTC GACGAAATAGAGTACGCCGATCGCATGAAAGATGTGCAGAGGCGCGCGAG CagaAGATCCGACAACCTTCTGACCCCTGCGCCTGTCGATGCGTCGGCCA TCGCCGTGGCAACGCCGGTAGACGGCACAATCGATCCGGCGACGGCTCTA CTGATTGCGACCCACAAATGTACCAAGGACGTTCGACGGCGCGAAACGTC CATTTGCAACGAAGCTGCGAAGCTCGGCATCGCTGTCGGCGAGAAGGCGG GCCAGGTCGGTACGGTGGCCAAGCGGCTGTACATCGATCAAACGGCGTCG AAGCTGGCCGCAACATCCCTAAGCGCGAGACG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1054:25161..26192+

>mRNA_P-littoralis_Contig1054.15.1 ID=mRNA_P-littoralis_Contig1054.15.1|Name=mRNA_P-littoralis_Contig1054.15.1|organism=Pylaiella littoralis U1_48|type=CDS|length=693bp|location=Sequence derived from alignment at P-littoralis_Contig1054:25161..26192+ (Pylaiella littoralis U1_48)
ATGAACAACATCACGATCGACGCTTCCACAGGAGACATTGTGGTGAAAAG
CATGACCAAATGCATCATGCCGAATTTGCACGACAGCAGTATTCTTAAGT
CAGTGCGCCGCATACTCGAGGACAATGATGGCCCCAAAATGTCCACGCGT
CTCATAAATGGCAGACAGATGTCTATTGCCACGCTTGGGTTGTGCTATGA
CATCCTTGAAAAAATGAACGGCCCCAACTGGCGCAAGTGGCGTCAGGAGT
CGGAACAGGCGTTCAACCACGCCCTGCGTGAGCGTGTTGAGCACGTTCGT
TCCTCAGCCAAACGCAGCAACCCCAGCCACGGGAACAGCAGATTCGCGCG
GGTGGAGACAAAGGCGGTTGTTCGACAGAAAGCTCTTCGGTCCATCAACA
TCGATGGCTCTGTCAGGATTGACGAGGCCAGTGGCAGAGCGTCTGACCTG
GTGAACAGCTTTCGTGGATGTAAGCGACGCCAAGACCAACGTCGAGATCA
TCGACCCGCCCTCCGGTCAAGGAGAATCGGTCAAGCAAGCCATTTTGGTT
CGACCACGGAACGGATGAAGAGAGGAGGGCCTATGTTTCGATTGAGGCTA
AGAAAAGCATGGTCTTTGGAGAAATTGATATCTACGACACTTGCAAACAG
AAACTGGAGTCCGTGGGGCGGTTCGCCACCCTCGACGAAATAG
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