mRNA_P-littoralis_Contig1054.11.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1054.11.1
Unique NamemRNA_P-littoralis_Contig1054.11.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1054.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1054contigP-littoralis_Contig1054:13617..14409 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size188
Hectar predicted targeting categoryother localisation
Exons2
Cds size186
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789388.2961316-CDS-P-littoralis_Contig1054:13616..137211680789388.2961316-CDS-P-littoralis_Contig1054:13616..13721Pylaiella littoralis U1_48CDSP-littoralis_Contig1054 13617..13721 -
1680789388.3047023-CDS-P-littoralis_Contig1054:14328..144091680789388.3047023-CDS-P-littoralis_Contig1054:14328..14409Pylaiella littoralis U1_48CDSP-littoralis_Contig1054 14329..14409 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1054.11.1prot_P-littoralis_Contig1054.11.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1054 13617..14409 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1054.11.1

>prot_P-littoralis_Contig1054.11.1 ID=prot_P-littoralis_Contig1054.11.1|Name=mRNA_P-littoralis_Contig1054.11.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=62bp
KARELPQSQFRNCVKHLIGNLNKGIGPNVTLALFEASKTPHSTTFNKIME
ETVLSEMPHAY*
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mRNA from alignment at P-littoralis_Contig1054:13617..14409-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1054.11.1 ID=mRNA_P-littoralis_Contig1054.11.1|Name=mRNA_P-littoralis_Contig1054.11.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=793bp|location=Sequence derived from alignment at P-littoralis_Contig1054:13617..14409- (Pylaiella littoralis U1_48)
AAGGCGAGGGAGCTCCCGCAGTCACAGTTTCGCAACTGCGTCAAGCATCT
CATCGGCAACCTCAATAAGGGGATCGGACCGGTGAGCGTTACTTCGTGAT
ACAGCTTGTTGCATAGACGACGCTGCTGCACACACCGGTTGTGCATTGTC
TATTTTTCGCTTATGGCAGGAAGGACTGTCCTGTCCTGGGTTGCAGCAGA
AGCGCAGAGGGTTCGTGACCAAAAGTTCCTGAAGTACGCATTGAAACGCG
TGTGGGTCTTTTTTTCCACGGTGGGGCGTGTTTGGCTCATTGCGGCAAAA
AGTGTGACGGAGGAGCATTGAAAGGGGGGAAGTATATACTGCTGTGAGCT
GCCCATGATAAGAGAATGAAAAGTAGTGGGATGCACATGACTGCAGCTGT
AGCATTCTCAATGAATAACCATGTGCAAGAGGGCCGTAATAGAGTGAGGA
GACTGCTTTTGAAACAAGGACTTGTCCCTAACACCTGGAGTGATCTGCCA
TGTAGGTGATGTGGTTCTATTGCGCAAAACATTGTGCGCGTATCATGCGA
CACGTGGTTTTTTGTTATGGTGTTCGTGTTTTCTTGATTTTGCTCTACCG
CAGAAGCGACACCATTTTATGACGTCTCATTCGCAGCGCCACTTGGACGC
GCGTACCTACTGTGAACGTAATTCGCCAATTTTTCCAGAATGTCACATTG
GCTCTTTTCGAGGCGTCGAAGACCCCCCACTCGACCACCTTCAACAAGAT
CATGGAGGAGACGGTCTTGAGCGAAATGCCCCATGCATACTAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1054:13617..14409-

>mRNA_P-littoralis_Contig1054.11.1 ID=mRNA_P-littoralis_Contig1054.11.1|Name=mRNA_P-littoralis_Contig1054.11.1|organism=Pylaiella littoralis U1_48|type=CDS|length=186bp|location=Sequence derived from alignment at P-littoralis_Contig1054:13617..14409- (Pylaiella littoralis U1_48)
AAGGCGAGGGAGCTCCCGCAGTCACAGTTTCGCAACTGCGTCAAGCATCT
CATCGGCAACCTCAATAAGGGGATCGGACCGAATGTCACATTGGCTCTTT
TCGAGGCGTCGAAGACCCCCCACTCGACCACCTTCAACAAGATCATGGAG
GAGACGGTCTTGAGCGAAATGCCCCATGCATACTAG
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