mRNA_P-littoralis_Contig1054.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1054.1.1
Unique NamemRNA_P-littoralis_Contig1054.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1054.1.1 vs. uniprot
Match: A0A6H5KHG3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHG3_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 8.050e-15
Identity = 63/146 (43.15%), Postives = 77/146 (52.74%), Query Frame = 3 
Query:  396 MTARPDGAAVEGEEDAIFDEPM--VGEELKGLMGETPSAGNESA-----------------HFIADTAARLAIESGCVDEAPLVLRGRITRRRNVRPTPVSYPRKVDLQRVLDRQTKRDGAPGYLLAKG*GTKVT-TTPTDLLCVG 773
            MTARPDGAA EG ED +FD+P+  VGEEL+GL+  +P + + +                   FI +TAARLA ESGC  EAPLV      + R    T       V  ++VLDRQ   DG PGY LAK    +V   T  DL C G
Sbjct:    1 MTARPDGAAEEGGEDTLFDDPVEVVGEELEGLLRLSPPSTSSTPVLAIITQHAIDSPETIRDFIEETAARLAKESGCQHEAPLVT---WKQDREAATTCGRLQAGVLSRKVLDRQMTHDGDPGYCLAKRVRNQVYYDTSIDLDCHG 143
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BLAST of mRNA_P-littoralis_Contig1054.1.1 vs. uniprot
Match: A0A6H5L174_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L174_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 1.640e-8
Identity = 39/95 (41.05%), Postives = 52/95 (54.74%), Query Frame = 3 
Query:  354 SAIADSAVVAERRSMTARPDGAAVEGEEDAIFDEPMVGEELKGLMGETPSAGNESA----------------HFIADTAARLAIESGCVDEAPLV 590
            +A+   A+ +   SMTAR  GAA EGE D IFD+P+VGEE++GLMG+ PS  ++                   FI + A  LAI +GC    PLV
Sbjct:   44 AAVRKHAIESPEXSMTARSRGAAPEGEPDPIFDDPVVGEEIEGLMGDPPSVSDDEELAAVRKHAIESPETVRAFIKERARSLAIGAGCPHSLPLV 138
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BLAST of mRNA_P-littoralis_Contig1054.1.1 vs. uniprot
Match: A0A6H5KC65_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC65_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 1.060e-7
Identity = 37/82 (45.12%), Postives = 46/82 (56.10%), Query Frame = 3 
Query:  393 SMTARPDGAAVEGEEDAIFDEPMVGEELKGLMGETPSAGNESA----------------HFIADTAARLAIESGCVDEAPLV 590
            SMTAR  GAA EGE D IFD+P+VGEE++GLMG+ PS  ++                   FI + A  LAI +GC    PLV
Sbjct:   53 SMTARSRGAAPEGEPDPIFDDPVVGEEIEGLMGDPPSVSDDEELAAVRKHAIESPETVRAFIKERARSLAIGAGCPHSLPLV 134
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BLAST of mRNA_P-littoralis_Contig1054.1.1 vs. uniprot
Match: A0A6H5KC02_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC02_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 1.110e-7
Identity = 36/82 (43.90%), Postives = 46/82 (56.10%), Query Frame = 3 
Query:  393 SMTARPDGAAVEGEEDAIFDEPMVGEELKGLMGETPSAGNESA----------------HFIADTAARLAIESGCVDEAPLV 590
            SMTAR  GAA EGE D IFD+P+VGEE++GLMG+ PS  ++                   FI + A  +AI +GC    PLV
Sbjct:   10 SMTARSRGAAPEGEPDPIFDDPVVGEEIEGLMGDPPSVSDDEELAAVRKHAIESPETVRAFIKERARSVAIGAGCPHSLPLV 91
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BLAST of mRNA_P-littoralis_Contig1054.1.1 vs. uniprot
Match: A0A6H5JL74_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL74_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 1.290e-6
Identity = 26/38 (68.42%), Postives = 31/38 (81.58%), Query Frame = 3 
Query:  396 MTARPDGAAVEGEEDAIFDEPMVGEELKGLMGETPSAG 509
            MTAR  GAA EGE D IFD+P+VGEE++GLMG+ PS G
Sbjct:    1 MTARSRGAAPEGEPDPIFDDPVVGEEIEGLMGDPPSRG 38
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1054.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KHG3_9PHAE8.050e-1543.15Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L174_9PHAE1.640e-841.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KC65_9PHAE1.060e-745.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KC02_9PHAE1.110e-743.90Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JL74_9PHAE1.290e-668.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1054contigP-littoralis_Contig1054:2288..4141 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size853
Hectar predicted targeting categoryother localisation
Exons2
Cds size549
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789388.4360363-UTR-P-littoralis_Contig1054:2287..24661680789388.4360363-UTR-P-littoralis_Contig1054:2287..2466Pylaiella littoralis U1_48UTRP-littoralis_Contig1054 2288..2466 +
1680789388.4617789-UTR-P-littoralis_Contig1054:4016..41411680789388.4617789-UTR-P-littoralis_Contig1054:4016..4141Pylaiella littoralis U1_48UTRP-littoralis_Contig1054 4017..4141 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789388.444532-CDS-P-littoralis_Contig1054:2466..29521680789388.444532-CDS-P-littoralis_Contig1054:2466..2952Pylaiella littoralis U1_48CDSP-littoralis_Contig1054 2467..2952 +
1680789388.4529607-CDS-P-littoralis_Contig1054:3953..40161680789388.4529607-CDS-P-littoralis_Contig1054:3953..4016Pylaiella littoralis U1_48CDSP-littoralis_Contig1054 3954..4016 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1054.1.1prot_P-littoralis_Contig1054.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1054 2467..4016 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1054.1.1

>prot_P-littoralis_Contig1054.1.1 ID=prot_P-littoralis_Contig1054.1.1|Name=mRNA_P-littoralis_Contig1054.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=183bp
MKQMESSTRLDAKRARKSTHVHQSFSHKREVDATKQQKEEQQQQQEYSSS
SSSSSPRESAIADSAVVAERRSMTARPDGAAVEGEEDAIFDEPMVGEELK
GLMGETPSAGNESAHFIADTAARLAIESGCVDEAPLVLRGRITRRRNVRP
TPVSYPRKVDLQRVLDRQTKRDGAPGYLLAKG*
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mRNA from alignment at P-littoralis_Contig1054:2288..4141+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1054.1.1 ID=mRNA_P-littoralis_Contig1054.1.1|Name=mRNA_P-littoralis_Contig1054.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1854bp|location=Sequence derived from alignment at P-littoralis_Contig1054:2288..4141+ (Pylaiella littoralis U1_48)
GCGGGACAGCTGAAACAAAATGCGTTCTTCTTGTAGGGGAGAAGAATAAG
GGGGTTCTGTTAGAATGTAAAAATGGACCCCCCCTCATGCTCAGCACATG
TGGTTCAATACCACCACAGGACGCTGCTGGGACTGCAACCAGGGCGGCGC
TGTGATACTGCCACGCCACAAGCGCGGAGATGAAACAAATGGAGTCTAGC
ACGAGGTTAGATGCGAAGCGGGCGCGCAAGTCCACACACGTACACCAAAG
CTTCTCCCACAAAAGAGAGGTAGACGCAACGAAACAGCAGAAAGAGGAGC
AGCAGCAGCAGCAGGAATACAGCAGCAGCAGTAGCAGCAGCAGCCCGCGG
GAGAGCGCCATTGCGGACTCAGCCGTGGTGGCTGAGCGGCGCTCCATGAC
CGCACGCCCCGATGGTGCTGCAGTGGAGGGCGAGGAGGATGCCATCTTTG
ACGAGCCCATGGTGGGGGAGGAGCTAAAGGGTTTGATGGGAGAGACGCCG
AGTGCCGGCAATGAATCCGCACACTTCATCGCGGATACAGCTGCTCGGCT
TGCGATCGAATCGGGTTGTGTAGACGAGGCGCCGCTCGTTCTACGCGGAA
GGATAACTCGGCGCAGAAACGTGCGGCCAACACCAGTCTCCTATCCTCGG
AAGGTTGACCTCCAGGTGATTCACCACAGCAAAAAAATCGCATGTTGTGC
AGCCTACTGCTGTATGGTCGTGTGTGCAAGAAAGAAAGTCGCAATCTATA
TTCGGTACTGCTGTAGTCCTCTATTCCTTTCTCCATTGCCTGGTATGTTT
TTGCTTGACCTGTTCACACGACCGCTGTACTAAACGTATCCTATGATACT
TACCCGTAATTTGTACAAGTGAATCACGTGCATAATAGTTACCCGTAGTT
TGTATTTGTGTGATTTGTATGGTAGAATCCGGGTTGTTGCATAACACAGC
ACACCATATTCTGGAAACCCATCAGCCAGCCTTCTACGTGCTTGCCTCAA
AACCAACCCATACCTATACTACAGCATACCTGTACGACATCCAAGGTCGG
ATGGTCCTGCTGTTTGGCGTTCGTGTTCGTACTATTTGCTGTGATATTAG
TGCGCATACAGACCATCGTAGTAGCAGCTACACCGCCATGTCAGAAGAGT
GATATTTCTGCTGCTGTTGTTGCTTTAGCTTTGGTTTCCTACGCCAACAC
CACCACCGCAGCAGCAGTAGGAGCACCTCGATGAAAAGTGCTGCTACTGC
TGCTGCTGTTGTTGTTGTTATGTTCTTTCGTACGGCAACAAAAATCGCCA
TGAGCCAGTCAGCACTCTGATGACAGCAGTAGCAGCAGTACTTGTAGCAA
GGTAAGATTGGGACGTCGCTGGATATACACAGCCGGATATGTACGACTGG
GACTGTCTGCGGGCCGAAACGATAGGGTGGAGGGTAATGCGGGCAAATAT
CAACCGACACGCTGCGGCTTTCTTTTTTGCTGAAAAGTTAGCAGTAAGTT
TTCGTCGTCCTTTCTTTCTTGTGACATGGTCAAACGAAAGTTGTATAACT
GCGGGAAACCCATGGCCACGGGCAAAGTATTTTAGCATGCTCTCACTTGC
CCCCCCCCCTCTCCATATCCCCGCCCACTTCCCTCCCCTGTTCTTGATTG
ACTTTGAATTATTTAGCGTGTGCTCGACAGGCAAACCAAACGCGACGGCG
CTCCTGGTTACCTCCTTGCGAAAGGGTGAGGAACCAAAGTTACTACGACA
CCTACAGACTTGCTCTGCGTCGGGGGCTTCCATGATCGCCGCTCTGAAGG
TGTTCGCGGGGCAGGGGGAGAATGGTATCCCCCGCGAGATTGTCTCCGCC
ATGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig1054:2288..4141+

>mRNA_P-littoralis_Contig1054.1.1 ID=mRNA_P-littoralis_Contig1054.1.1|Name=mRNA_P-littoralis_Contig1054.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=549bp|location=Sequence derived from alignment at P-littoralis_Contig1054:2288..4141+ (Pylaiella littoralis U1_48)
ATGAAACAAATGGAGTCTAGCACGAGGTTAGATGCGAAGCGGGCGCGCAA
GTCCACACACGTACACCAAAGCTTCTCCCACAAAAGAGAGGTAGACGCAA
CGAAACAGCAGAAAGAGGAGCAGCAGCAGCAGCAGGAATACAGCAGCAGC
AGTAGCAGCAGCAGCCCGCGGGAGAGCGCCATTGCGGACTCAGCCGTGGT
GGCTGAGCGGCGCTCCATGACCGCACGCCCCGATGGTGCTGCAGTGGAGG
GCGAGGAGGATGCCATCTTTGACGAGCCCATGGTGGGGGAGGAGCTAAAG
GGTTTGATGGGAGAGACGCCGAGTGCCGGCAATGAATCCGCACACTTCAT
CGCGGATACAGCTGCTCGGCTTGCGATCGAATCGGGTTGTGTAGACGAGG
CGCCGCTCGTTCTACGCGGAAGGATAACTCGGCGCAGAAACGTGCGGCCA
ACACCAGTCTCCTATCCTCGGAAGGTTGACCTCCAGCGTGTGCTCGACAG
GCAAACCAAACGCGACGGCGCTCCTGGTTACCTCCTTGCGAAAGGGTGA
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