mRNA_P-littoralis_Contig1050.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1050.1.1
Unique NamemRNA_P-littoralis_Contig1050.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1050.1.1 vs. uniprot
Match: A0A6H5K953_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K953_9PHAE)

HSP 1 Score: 420 bits (1080), Expect = 4.470e-131
Identity = 269/571 (47.11%), Postives = 331/571 (57.97%), Query Frame = 2
Query:  224 SYVLSKELGIVKPHPSMYDQPRCLWDLTSAHSPVFSCGPELLHLDFLNHLGGVKSFFLCLLSRPRRAHVAGVIRQRRTLFGPGALPLKDPVKDYTRYTGAHKGLLGKCPAT---GVSRSTRIRRYDEALFELHGAQHTEQRSMGRPERRGCVGSAAP-ISPSIICPHVCRTR----PGLLGLSPT*PSRSGERLHSQC*AYG*PTGREDKHA--PVTSCRRFHPSPRTPSGCRRRRGRVPDS---QESRKIV*RSRSRGTSREENQHASGASTAHVACTLHGVSL---FTIRQTACDG-----EEVTSGPRCQRILTALGEGLRGGLANVHDETAGFTPTASASSGKHTGSARWRSTIVRDDDDHAAPSDDGRSTALGGNDDSCEACVSKGPVRPHATCILSANEVWYSCGRSGGDQTVCAEAACPRCWEGG--GLKTNDIVCSRFKHGAPPKASSCLGRFKGGDVKTATNAGPTSRDWCVGNGQGKLVELFTNPQAKAGGGLAGDGDVTLAVILYFFDLEGNRRLDSIAAASGPMMEYVLVYEYVTCGTERSSTCAHASHLPNVVLQNGG 1867
            +  LSK+LGIV+PHPSM  QPR LWDLTS HSP+ S GPELLHLDFLNHLGGV++FFL LLS   RAHV GV+RQR  L+GPGALPLKDP+KDYT YTG+HKGL G        G+  S    R+  +   L  AQ+ E    GR    G +      +  S       R +      L+ L      R+G+ + +     G    +   H    V    R H             GR  D+   +   +   RSR   ++R+   H +  +   +A  LH ++    +T  + +        E+VTSGP C+RIL ALG+ LRGGL  V D  A  TPTAS   GK+ GSA+W++TI+   D   A S+DG  +   G  +  E CVS+GPVRPHA  IL AN  W+SCGRS G    CA+A CP CWEGG   LK  +I CSRFKHG PPK SS LGRFKGGDVK AT  GPT R WCVG+G+G+ VE+FT+P+AK    L+GDG VTL +ILYFFDL+GN R    AAA  PMMEYVLVYEYVT G  RS      +  P   LQ GG
Sbjct:  368 AVALSKKLGIVEPHPSMRVQPRLLWDLTSHHSPMVSEGPELLHLDFLNHLGGVQTFFLGLLSPAGRAHVTGVVRQRGGLYGPGALPLKDPIKDYTGYTGSHKGLFGSVQLIVFRGLLASVGAMRHYLSSNALR-AQNIEV--WGRLNDEGVLDRLRQYLQASSALTFAARGQVFSDSDLVELH----VRAGDMVENSKLTLGREGVKTTMHQWLHVAESIRAH-------------GRPQDANVGEAGHQTHKRSRKSSSNRDPAAHHARRTNTFLA--LHRLTSPEPYTANRYSYSSKTKVTEQVTSGPGCRRILAALGDRLRGGLNGVVDADASTTPTASMKDGKYQGSAKWQATILGGGD--LACSEDGGGSVAAGAKEPWEVCVSEGPVRPHAGAILRANAEWFSCGRSDGALDDCADARCPLCWEGGHESLKARNISCSRFKHGVPPKTSSGLGRFKGGDVKKATATGPTPRHWCVGDGRGESVEIFTSPEAKRKD-LSGDGHVTLGLILYFFDLDGNPRPGPTAAAD-PMMEYVLVYEYVTRGAGRSKKADSVTLHPTYWLQGGG 912          
BLAST of mRNA_P-littoralis_Contig1050.1.1 vs. uniprot
Match: D7FZ46_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ46_ECTSI)

HSP 1 Score: 370 bits (949), Expect = 3.680e-114
Identity = 243/586 (41.47%), Postives = 310/586 (52.90%), Query Frame = 2
Query:  233 LSKELGIVKPHPSMYDQPRCLWDLTSAHSPVFSCGPELLHLDFLNHLGGVKSFFLCLLSRPRRAHVAGVIRQRRTLFGPGALPLKDPVKDYTRYTGAHKGLLGKCP---------ATGVSR----STRIRRYDEALFELHGAQHTEQRSMGRPERRGCVGSAAPISPSIICPHVCRTRPGLLGLSPT*PSRSGERLHSQC*AYG*PTGREDKH-----APVTSCRRFHPSPRTPSGCRRRRGRVPDSQESRKIV*RSRSRGTSREENQHASGASTAHVACT------LHGVSLFTIRQTACDGEEVTSGPRCQRILTALGEGLRGGLANVHDETAGFTPTASASSGKHTGSARWRSTIVRDDDDHAAPSDDGRSTA---------------LGGNDDSCEACVSKGPVRPHATCILSANEVWYSCGRSGGD-QTVCAEAACPRCWEGGG--LKTNDIVCSRFKHGAPPKASSCLGRFKGGDVKTATNAGPTSRDWCVGNGQGKLVELFTNPQAKAGGGLAGDGDVTLAVILYFFDLEGNRRLDSIAAASGPMMEYVLVYEYVTCGTERSSTCAHASHLPNVVLQNG 1864
            LSKELGIV+PHP++   PR LWDLTS HSP+   G ELLHL+ LNHLG  ++F L LLS   R HVAG+ RQ RTL G G  PLK+PVKDY  YTGA K L G            +T + +    ST +++Y+  ++     +    R +   +    +  AA             T   LL L     +R+G+ + +     G    R   H     A        H +     G  +   +   S             G+SR+   H +  +   +A         +  + ++  +     E VTSGP CQR+L AL + L GG+ NV D T G  PTA+  +G+  GSA WR+TI+R D   AAP+D    +A                GG  ++ EAC+SKG VRP A  IL+AN +WY+CGRS GD + VC E  C  CWEGGG  LK ++I+C R KHG P K SS LGRFKGGDVK AT  G T RDW  G+GQG  VE+FTNP AK    L+GDG VTL  ILYFFDLEGNRR DSI  A GP ME+VL YE+V CG+ RS      +  P   LQ G
Sbjct:   93 LSKELGIVEPHPTLVGHPRALWDLTSMHSPMVCVGSELLHLNNLNHLGQSQTFLLDLLSPAGREHVAGIFRQGRTLLGAGVSPLKNPVKDYPGYTGAQKALFGSVQLIVLRGLLLSTAMMKHYLNSTALKKYNGEIWGHVSPEEVRDRVLEYFQASSSLSFAANGQEF--------TDFDLLQLH----TRAGDYVENAKLTLGRAGVRTSNHMWLHFADSIKAHGHHQNADVSEGGHQHHKKHNKS-------------GSSRDPPAHHARNTNTKLALMRLATSETYTATRYSYSKKTMITETVTSGPGCQRVLQALDDSLSGGITNVVDGTEGTKPTAAMLAGQPHGSATWRATILRQD---AAPNDVRAGSAGSGVAPXXXXXXXXXXGGPREAWEACLSKGAVRPSAGAILNANTLWYACGRSDGDGRDVCKELRCSSCWEGGGKSLKNDEIICHRIKHGVPAKISSGLGRFKGGDVKAATAGGATPRDWVAGSGQGDAVEIFTNPMAKRDD-LSGDGHVTLGRILYFFDLEGNRRPDSIPDA-GPAMEFVLAYEFVACGSGRSKKADSVTQHPTYWLQGG 648          
BLAST of mRNA_P-littoralis_Contig1050.1.1 vs. uniprot
Match: A0A6H5JM61_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM61_9PHAE)

HSP 1 Score: 259 bits (662), Expect = 2.090e-74
Identity = 149/269 (55.39%), Postives = 178/269 (66.17%), Query Frame = 2
Query: 1070 EEVTSGPRCQRILTALGEGLRGGLANVHDETAGFTPTASASSGKHTGSARWRSTIVRDDDDHAAPSDDGR-STALGGNDDSCEACVSKGPVRPHATCILSANEVWYSCGRSGGD-QTVCAEAACPRCWEGGG--LKTNDIVCSRFKHGAPPKASSCLGRFKGGDVKTATNAGPTSRDWCVGNGQGKLVELFTNPQAKAGGGLAGDGDVTLAVILYFFDLEGNRRLDSIAAASGPMMEYVLVYEYVTCGTERSSTCAHASHLPNVVLQNG 1864
            E +TSGP CQR+L AL +   GG+ NV D T G  PTA+  +G+  GSA    T +R     AAP+D G  ST  GG  ++ EAC+S+G VRP A  IL+AN +WY+CGRS GD + VC E  C  CWEGGG  LK +DI+C R KHG P K SS LGRFKGGDVK AT  G T RDW VG+GQG  VE+FTNP+AK    L+GDG VTLA IL+FFD EGNRR DS A  +GP ME+VL YE+VTCG+ RS      +  P   LQ G
Sbjct:  298 ETLTSGPGCQRVLQALDDSRSGGITNVVDGTEGTKPTAAMLAGQPHGSA----TSLRGG---AAPNDVGTGSTGGGGPREAWEACLSEGAVRPSAGAILNANTLWYACGRSDGDGRDVCKELRCSSCWEGGGKSLKNDDIICYRIKHGVPAKISSGLGRFKGGDVKAATAGGATPRDWAVGSGQGDAVEIFTNPKAKRDD-LSGDGHVTLASILHFFDHEGNRRPDS-APDAGPAMEFVLAYEFVTCGSGRSKKADSVTQHPTYWLQRG 557          
BLAST of mRNA_P-littoralis_Contig1050.1.1 vs. uniprot
Match: A0A6H5KMA2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMA2_9PHAE)

HSP 1 Score: 241 bits (615), Expect = 2.930e-69
Identity = 148/311 (47.59%), Postives = 186/311 (59.81%), Query Frame = 2
Query:  959 GTSREENQHASGASTAHVACT------LHGVSLFTIRQTACDGEEVTSGPRCQRILTALGEGLRGGLANVHDETAGFTPTASASSGKHTGSARWRSTIVRDDDDHAAPSDDGR-STALGGNDDSCEACVSKGPVRPHATCILSANEVWYSCGRSGGDQTVCAEAACPRCWEGGGLKTNDIVCSRFKHGAPPKASSCLGRFKGGDVKTATNAGPTSRDWCVGNGQGKLVELFTNPQAKAGGGLAGDGDVTLAVILYFFDLEGNRRLDSIAAASGP--MMEYVLVYEYVTCGTERSSTCAHASHLPNVVLQNG 1864
            G+SR+   H + ++ A +A         +  + ++  +     E VTSGP CQR+L AL + L GG+ NV D T G  PTA+  +G+  GSA WR+TI+R D   AAP D G  ST  GG  ++ EAC+S+G VRP A  IL+AN +WY+CGRS GD                 LK +DI+C R KHG P + SS LGRFKGGDVK AT  G T R W VG+GQG  VE+FTN +AK    L+GDG VTLA ILYFFD +GNRR DS   A GP   ME+VL YE+VTCG+ RS      +  P   LQ G
Sbjct:   35 GSSRDPPAHHARSTNAKLALMRLATTETYTATRYSYSKKTKITETVTSGPGCQRVLQALDDSLSGGITNVVDGTEGTKPTAAMLAGQPHGSATWRATILRQD---AAPDDVGTGSTGGGGPREAWEACLSEGAVRPSAGAILNANTLWYACGRSDGDGRDS-------------LKNDDIICYRIKHGVPAEISSGLGRFKGGDVKAATAGGATPRHWAVGSGQGDAVEIFTNHKAKRDD-LSGDGHVTLARILYFFDHKGNRRPDSTPDA-GPDSAMEFVLAYEFVTCGSGRSKKADSVTQHPTYWLQRG 327          
BLAST of mRNA_P-littoralis_Contig1050.1.1 vs. uniprot
Match: A0A6H5K8R0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8R0_9PHAE)

HSP 1 Score: 229 bits (583), Expect = 1.050e-64
Identity = 132/270 (48.89%), Postives = 167/270 (61.85%), Query Frame = 2
Query: 1076 VTSGPRCQRILTALGEGLRGGLANVHDETAGFTPTASASSGKHTGSARWRSTIVRDDDDHAAPSDDGRSTALGGNDDSCEACVSKGP-VRPHATCILSANEVWYSCGRSGGD-QTVCAEAACPRCWEGGG--LKTNDIVCSRFKHGAPPKASSCLGRFKGGDVKTATNAGPTSRDWCVGNGQGKLVELFTNPQAKAGGGLAGDGDVTLAVILYFFDLEGNRRLDSIAAASGPMMEYVLVYEYVTCGTERSSTCAHASHLPNVVLQNGGCT 1873
            VTSG  CQR+L A+G  L+ G+A+V D T G  PTA+AS+ +H GSARW S+++ D+     P+     +A  G  +  EAC++    +RP    IL+A  +WY CG   GD   VC+E  CP CWEGGG  L  ++I CSR KHG P K+SS +  FKGGDVK ATN G + RDW VG G G+ VE+FT P+A+    L+GDG VTL  ILYFF++  NRR     +A GP ME VLVYEYVTCG  RS     A+  P   LQ G  T
Sbjct:   54 VTSGSGCQRVLKAVGSMLQVGMAHVEDATVGVVPTAAASTAQHQGSARWESSVLPDEP--LVPNHSHLGSAGKGPKEPWEACMAGADGIRPRKERILAAARIWYGCGSGKGDLSAVCSELRCPCCWEGGGGKLDNSNISCSRIKHGVPAKSSSGMCYFKGGDVKAATNEGTSPRDWAVGAGGGQDVEIFTTPKAREDD-LSGDGGVTLGKILYFFNVNLNRRPG--CSAPGPAMECVLVYEYVTCGLGRSKKEDLATKHPTYWLQGGAAT 318          
BLAST of mRNA_P-littoralis_Contig1050.1.1 vs. uniprot
Match: A0A6H5K7Z2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Z2_9PHAE)

HSP 1 Score: 221 bits (564), Expect = 3.050e-63
Identity = 127/241 (52.70%), Postives = 151/241 (62.66%), Query Frame = 2
Query: 1196 GKHTGSARWRSTIVRDDDDHAAPSDDGRSTALGGND---------------DSCEACVSKGPVRPHATCILSANEVWYSCGRSGGD-QTVCAEAACPRCWEGGG--LKTNDIVCSRFKHGAPPKASSCLGRFKGGDVKTATNAGPTSRDWCVGNGQGKLVELFTNPQAKAGGGLAGDGDVTLAVILYFFDLEGNRRLDSIAAASGPMMEYVLVYEYVTCGTERSSTCAHASHLPNVVLQNG 1864
            G+  GSA WR+TI+R D   AAP D    +A GG                 ++ EAC+S+  VRP A  IL+AN +WY+CGRS GD + VC E  C  CWEGGG  LK +DI+C R KHG P K SS LGRFKGGDVK AT  G T RDW VG+GQG  VE+FTNP+AK    L+GDG VTL+ ILYF D EGNRR DS   A GP +E+VL YE+VTCG+ RS      +  P   LQ G
Sbjct:    4 GQPHGSATWRATILRQD---AAPDDVKAGSARGGXXXXXXXXXXXXXXGPREAWEACLSEDAVRPSAGAILNANTLWYACGRSDGDGRDVCKELRCSSCWEGGGKSLKNDDIICYRIKHGVPAKISSGLGRFKGGDVKAATAGGATPRDWAVGSGQGDAVEIFTNPKAKRDD-LSGDGHVTLSRILYFVDHEGNRRPDSTPDA-GPAVEFVLTYEFVTCGSGRSKKADSVTQHPTYWLQGG 239          
BLAST of mRNA_P-littoralis_Contig1050.1.1 vs. uniprot
Match: A0A6H5K8J7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8J7_9PHAE)

HSP 1 Score: 130 bits (328), Expect = 6.940e-29
Identity = 89/248 (35.89%), Postives = 126/248 (50.81%), Query Frame = 2
Query: 1070 EEVTSGPRCQRILTALGEGLRGGLANVH-DETAGFTPTASASSGKHTGSARWRSTIVRDDDDHAAPSDDGRSTALGGNDDSCEACVSKGPVRPHATCILSANEVWYSCGRSGGDQTVCAEAACPRCW-EGGGLKTNDIVCSRFKHGAPPKASSCLGRFKGGDVKTATNAGPTSRDWCVGNGQGKLVELFTNP--QAKAGGGLAGDGDVTLAVILYFFDLEGNRRLDSIAAASGPMMEYVLVYEYVTCG 1801
            E V +G  C  +L +LG  L GGL++   D  A  TPTA+  + +  G+A W S +        A S  G   + GG     E+ ++ GP+RP    ++ A   ++SCGR+ G   +C E  C  CW     L   DI+C+RFKHGAP +A S LGR+KG DV+ +T   P   DW +G G G+ VE F           G A    ++LA ILY  +  GN R  S      P+  +VL ++YV+ G
Sbjct:  134 ETVKAGSGCSAVLWSLGNVLPGGLSSTPTDARAASTPTAAQRAAQFPGAATWTSVLWE------AGSPWGNDASGGG----WESRIATGPLRPDEKTLIGAYNTYFSCGRADGG-ALCEEPRCADCWLNSSTLDDKDIICTRFKHGAPLRAGSGLGRWKGDDVRASTRTAPGG-DWWLGEGCGEDVEFFKEQPFDDDVHDGPAQASGLSLARILYLLEHRGNTRQGS---HDHPLTSWVLAFDYVSDG 366          
BLAST of mRNA_P-littoralis_Contig1050.1.1 vs. uniprot
Match: A0A6H5K1N3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1N3_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 5.630e-23
Identity = 85/248 (34.27%), Postives = 119/248 (47.98%), Query Frame = 2
Query: 1070 EEVTSGPRCQRILTALGEGLRGGLANVH-DETAGFTPTASASSGKHTGSARWRSTIVRDDDDHAAPSDDGRSTALGGNDDSCEACVSKGPVRPHATCILSANEVWYSCGRSGGDQTVCAEAACPRCW-EGGGLKTNDIVCSRFKHGAPPKASSCLGRFKGGDVKTATNAGPTSRDWCVGNGQGKLVELFTNP--QAKAGGGLAGDGDVTLAVILYFFDLEGNRRLDSIAAASGPMMEYVLVYEYVTCG 1801
            E V +G  C  +L +LG+ L GGL +   D  A  TPTA+  +    G+A W + +   +          R+ A GG     E+ ++ GP+RP    ++ A   ++SCGR+ G   +C E  C  CW     L   DIVC+RFKHGAP +ASS LGR+KGGD+               G G G+ VE F           G A    ++ A ILYF +  GN R  S      P+  +VL ++YV  G
Sbjct:  203 ETVKAGSGCSAVLRSLGDVLPGGLPSAPTDARAASTPTAAQRAAHFPGAASWTTVLWEAESPR-------RNDAGGGG---WESRIATGPLRPDERTLIGAYNTYFSCGRADGG-ALCEEPRCTDCWLNSSTLDDKDIVCTRFKHGAPLRASSGLGRWKGGDL---------------GEGCGEDVEFFKEQPFDNDVHDGPAQASGLSSARILYFSEHTGNTRQGS---HDRPLTSWVLAFDYVFDG 421          
BLAST of mRNA_P-littoralis_Contig1050.1.1 vs. uniprot
Match: A0A6H5KKN3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKN3_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 5.100e-22
Identity = 62/150 (41.33%), Postives = 82/150 (54.67%), Query Frame = 2
Query: 1340 RPHATCILSANEVWYSCGRSGGDQTVCAEAACPRCWEGGGLKTNDIVCSRFKHGAPPKASSCLGRFKGGDVKTATNAGPTSRDWCVGNGQGKLVELFTNPQAKAGGGLAGDGDVTLAVILYFFDLEGNRRLDSIAAASGPMMEYVLVYEY 1789
            RP    +L A + +Y CG +G     C+ + CP CW+G  L+   I CSR+   AP  AS  LGR KGGDVK+A  AGP   +W +G+G G  VE++         G A   D+TL  +LYFF  +GNR L  +     P+M  VL YEY
Sbjct:   47 RPDEQTLLRAYQTYYGCGMAG----PCSSSRCPNCWDGDTLQQASIDCSRYIR-APMVASCGLGRLKGGDVKSAAQAGPRD-EWALGSGGGDNVEVYKQLPPMPAAGRADPTDLTLVKVLYFFRHKGNRPL--MGGNPPPLMWRVLGYEY 188          
BLAST of mRNA_P-littoralis_Contig1050.1.1 vs. uniprot
Match: A0A6H5KNJ3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNJ3_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 2.090e-21
Identity = 77/240 (32.08%), Postives = 112/240 (46.67%), Query Frame = 2
Query: 1076 VTSGPRCQRILTALGEGLRGGLA--NVHDETAGFTPTASASSGKHTGSARWRSTIVRDDDDHAAPSDDGRSTALGGNDDSCEACVSKGPVRPHATCILSANEVWYSCGRSGGDQTVCAEAACPRCWEGGGLKTNDIVCSRFKHGAPPKASSCLGRFKGGDVKTATNAGPTSRDWCVGNGQGKLVELFTNPQAKAGGGLAGDGDVTLAVILYFFDLEGNRRLDSIAAASGPMMEYVLVYEY 1789
            V  G  C R++ +L   L       ++H E      T +  SG++ GSA W +++  + D+     D                 +     RP    +L A + +Y CG +G     C+ + CP CW+G  L+   I CSR+   AP  AS  LGR KGGDVK+A  AGP   +W +G+G G  VE++         G A   D+TL  +LYFF  + NR L  +     P+  +VL YEY
Sbjct:  104 VRPGDGCVRLMQSLASFLGHDRVPTDIHAEAV---QTPAQLSGQYPGSAVWTASLFNNGDEQQLDGD-------------WRPRLVSSKFRPDEQTLLRAYQTYYGCGMAG----PCSSSRCPNCWDGDTLQQASIDCSRYIR-APMVASCGLGRLKGGDVKSAAQAGPRD-EWALGSGGGDNVEVYKQLPPMPAAGRADPTDLTLVKVLYFFRHKANRPL--MGGNPPPLTWWVLGYEY 319          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1050.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
A0A6H5K953_9PHAE4.470e-13147.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZ46_ECTSI3.680e-11441.47Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A6H5JM61_9PHAE2.090e-7455.39Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KMA2_9PHAE2.930e-6947.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K8R0_9PHAE1.050e-6448.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7Z2_9PHAE3.050e-6352.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K8J7_9PHAE6.940e-2935.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1N3_9PHAE5.630e-2334.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KKN3_9PHAE5.100e-2241.33Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNJ3_9PHAE2.090e-2132.08Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1050contigP-littoralis_Contig1050:17484..21832 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2033
Hectar predicted targeting categoryother localisation
Exons5
Cds size486
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1050.1.1prot_P-littoralis_Contig1050.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1050 20494..21561 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789387.029291-UTR-P-littoralis_Contig1050:17483..186431680789387.029291-UTR-P-littoralis_Contig1050:17483..18643Pylaiella littoralis U1_48UTRP-littoralis_Contig1050 17484..18643 -
1680789387.040988-UTR-P-littoralis_Contig1050:19412..195031680789387.040988-UTR-P-littoralis_Contig1050:19412..19503Pylaiella littoralis U1_48UTRP-littoralis_Contig1050 19413..19503 -
1680789387.0511212-UTR-P-littoralis_Contig1050:20468..204931680789387.0511212-UTR-P-littoralis_Contig1050:20468..20493Pylaiella littoralis U1_48UTRP-littoralis_Contig1050 20469..20493 -
1680789387.0924413-UTR-P-littoralis_Contig1050:21561..218321680789387.0924413-UTR-P-littoralis_Contig1050:21561..21832Pylaiella littoralis U1_48UTRP-littoralis_Contig1050 21562..21832 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789387.0651853-CDS-P-littoralis_Contig1050:20493..206571680789387.0651853-CDS-P-littoralis_Contig1050:20493..20657Pylaiella littoralis U1_48CDSP-littoralis_Contig1050 20494..20657 -
1680789387.0742137-CDS-P-littoralis_Contig1050:20888..211171680789387.0742137-CDS-P-littoralis_Contig1050:20888..21117Pylaiella littoralis U1_48CDSP-littoralis_Contig1050 20889..21117 -
1680789387.0833902-CDS-P-littoralis_Contig1050:21468..215611680789387.0833902-CDS-P-littoralis_Contig1050:21468..21561Pylaiella littoralis U1_48CDSP-littoralis_Contig1050 21469..21561 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1050.1.1

>prot_P-littoralis_Contig1050.1.1 ID=prot_P-littoralis_Contig1050.1.1|Name=mRNA_P-littoralis_Contig1050.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=162bp
MYDQPRCLWDLTSAHSPVFSCGPELLHLDFLNHLGGVKSFFLCLLSRPRR
AHVAGVIRQRRTLFGPGALPLKDPVKDYTRYTGAHKGLLGKCPATGVSRS
TRIRRYDEALFELHGAQHTEQRSMGRPERRGCVGSAAPISPSIICPHVCR
TRPGLLGLSPT*
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mRNA from alignment at P-littoralis_Contig1050:17484..21832-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1050.1.1 ID=mRNA_P-littoralis_Contig1050.1.1|Name=mRNA_P-littoralis_Contig1050.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4349bp|location=Sequence derived from alignment at P-littoralis_Contig1050:17484..21832- (Pylaiella littoralis U1_48)
ATGCACTCAAAGACGGGCGATAGCCCCCAGAGGGCCGGAGAGCTCGGAAT GAAGCAGCAAAATAGAAAGACGCAAGTGCCTTGCACGCTCTGTACGGCAA CTTAGAGCAAAATCGAGAGCGAGGTAGGAGGCGATATCGGCAACAGGGAT TTCGATGTCGGAAGCGCGGGGAGGTCGAACGAGGTCGGGCGCAGCTGCTT AAGCTCGGGTTCGGGACACCTGAAGCTACGTATTGTCGAAGGAACTCGGC ATCGTCAAGCCGCACCCTTCCATGTACGATCAACCACGGTGCTTATGGGA TCTGACGTCTGCACACTCGCCCGTGTTTTCGTGCGGCCCCGAGCTTCTCC ACCTGGACTTTCTGGTGTGTTGGGGTACCAACCTGTGCTGTATTCTCGGA TTCGAAACCCGCACGCACTCTATTAAATTCACACCACGTGTTACGTTTCG TTCCGTGAGGGGAAGGAAATCTTGGTTAATCACAGAGTGTGCCTACGTTA TCCGAACCTGTTTCTGCCTTTCGGATCGCCACGACCTATTGCGGCATCAT CAAGGTCATCGGCAAGGGCCCAAAGCCCCTGATAAAAAATGAAACGGGGC AAGAAGATATACAAATTTGCATAAGGCCAACGGGTATTTTTTCTCGTTCT ATGATCTCTTGCCTAAGCCGCCATCTTCTAACCCGCTGCGTTTACTCGTA TCTCCCGAACACCAGAACCACCTTGGGGGCGTAAAATCTTTCTTCCTCTG TTTACTTTCGCGACCTCGCCGCGCGCATGTCGCGGGAGTAATTCGCCAGC GACGCACGCTTTTTGGCCCGGGAGCGCTGCCACTGAAAGATCCTGTGAAG GACTACACCAGGTACACAGGCGCACACAAGGGTCTTCTCGGAAAGTGTCC AGCTACTGGTGTTTCGCGGTCCACTCGCATCCGCCGCTACGATGGTAAGA AGGCGAACACGTAGTTGCCCGACGCACGACGGGTGCTTATCTTGTCAGCG TTGGAGTTCACACCAACACACTATATACAGACGGCGCGTTCGTATTCCCC CGTTCGTGACAGGCGACACAACTTTGTGGTGATGCCTTCGTTCTGTTTAG TTCACCCTAACACAACGCACAAAACCTTTGCCCCGTCATCATGCTTGTGC TGCGATCGCACAAAAAACGAAACAGAAGCACTTTTTGAACTCCACGGCGC TCAACACACTGAACAGCGAAGTATGGGGCGACCTGAACGACGAGGGTGTG TTGGATCGGCTGCGCCAATATCTCCAAGCATCATCTGCCCTCACGTTTGC CGCACGCGGCCAGGTCTTCTCGGACTCTCACCTACGTGACCTTCACGTTC GGGTGAAAGACTACGTGAGCATCATGACCGCGCGAAAGCGCAAACTTTTT CGCATACTCTCCGTAGATAACAAGAAGCAATGGGCGGCCATATGCAGCGC GAAAGCACTACTTTCGGTACATACATGAAGCACACGGGTGGCTTCGAAGC TTCCACACCCCTCGTTGCTCTTGCATGCATCACTCGATGCCAACCATTCA TTGTACTCTGCGTTGGAGCCTAGTGGAGGGCGTCTTGTTGGGTTGTCGTT TCGAAGGACGTACCGTAAAACCCTCTGTTGTCCGCCCCCCCCCCCCCCCC CCTGGTTTCCCCCCTCCCGTAGAACAATGTGTCGGCCGAAAAGCATCAAA ACTTTATTCAACACCCGGGGGGAACTAGATATAGAACAAAACGTTCCTCT CCTCCAGACACGGTTTCCTCCCGTGGTAACATTTTCAAAGTGGATAGCCC CCTTGGGTATTTTTTGGACGGGAATTTTCTTGGGCTTTTGGCGTTGTACT GCCAAAGTGGAAAGCAGCTGCTTTTGGGGTCGAACAAGCCGCTTTCATTC ATTCGGCAATTGTACGGCGGCATTTGCTTGGATGGGGTTGTTGCATGCAT TGCTCATCATCTACCGTAGATATTGGGGTTGTTTGTTGGCGTTGTTTGGT GTTGTGTTGTTGTTGTTTACCATTGGAATGCAGAGCAGGTACGGCCTGTA TGTGTTTGTGAGGGCAGTCGTTTTATTTTTGGGCTTTACCCCCCGGGGTT GAGTACCAGAAAAGAAATAAGATGGCTTTCCTGCGGGGGGGATTTCTCCC CGGGGAATATATAGAACCCCCCCCCGCCCCACCCCAAACATTTTACCCGC GGGGGTAGTGTTTTCAGGAAAAAAAACATCCACCCGCCGGGGGGATCTTA GAGGGTCTTACGGTAATCCGATCAAATAACGCCACCGCCCGGTCTTCTTG CGCATGCCATCCAATAACACTAACGCCAGATTCACAATGCTAAGCTTACG GTTGACCGACCGGGCGTGAGGACAAGCACGCACCAGTGACTTCATGTCGC AGGTTCCATCCGAGCCCACGGTGGGAACAACGGAATATTCGTAGGCCTAC CCAAAATCGTACTCGAGATGTGTATATTTCCGTTGAGATTTTAAATGATT GCAAGGGTTTCGTTACTTCGAGGACGTGCCAATGTTGAATCGGCGTTGGC GTGCACAGAGGCGCGGCACTTGTAAAGCTCACATTGTTTACTACCCACGC ATGTAGTCAATACAGATGATTGGTCCCAGCATTTTCCACTTCACGGTGCA TCACCTCGGGTCGGTTGTTTTTGTTCAAAAATAACCTAACCCACGTTCAT ACTTCTGTGGTCAACGTCTTGACCCCCCTTTTCTTTTCCATCAATTCGGA GTTATACACGACGCGTCATTTTCTTGAACACCAAAAACATTTTGTTGTGC GACGGGCTCTGACAAACCTCCCCTATCCCTTTTTGTGCATGGTTCAGCTC CGTCGCAACCTCTCGGTTCGTTTGCGTCACGTTGGTGGCTCGTATCCCTT CATGGTGCACCACACCTCGATTGGAGAGTTCAGACACACCCTAAAACTAA TATAAACTCCAAGCATTATTTTTGACAACAAAACGTGACATTAAAAACAC CATGAAGCCGAAAGCGCGAGAATTCTAACCCCCTCGTTGCGGCAAGGACC GCGATGATTGCACCTAGTGGCTTAAGTGGCCCACGATTCGCCATCGTATT CAGGGAACCTTGTGCTATCATTTTGCCGGCAAAAGTATCCTTTAATACCG AGCAACGGCAACGACCCTCTTTCCCATTGTTGCGTAAAGGACGCCCTCGG GATGCAGACGTCGGCGAGGCAGGGTACCAGACTCACAAGAGAGCCGCAAA ATCGTGTAGCGATCGAGATCCCGCGGCACATCACGCGAGGAGAACCAACA CGCTTCTGGCGCTTCGACGGCTCATGTCGCCTGCACCCTACACGGCGTCT CGCTTTTCACCATCCGTCAAACGGCATGTGACGGAGAGGAAGTTACTTCT GGTCCCAGGTGCCAGCGCATCCTCACTGCGCTCGGCGAGGGCCTTCGGGG AGGACTCGCCAACGTCCACGACGAAACCGCCGGGTTTACCCCGACGGCAT CAGCGTCGTCGGGGAAACATACGGGCTCGGCAAGGTGGCGATCGACGATC GTGCGTGATGATGATGATCATGCTGCACCATCTGACGACGGCAGAAGTAC GGCCCTCGGGGGGAACGATGATTCATGTGAGGCATGTGTAAGCAAAGGCC CCGTCCGTCCCCACGCTACATGTATACTTAGTGCAAATGAAGTGTGGTAT TCCTGCGGCCGATCCGGTGGCGATCAAACCGTCTGTGCGGAAGCTGCGTG TCCTCGATGTTGGGAGGGGGGGGGGCTGAAAACCAACGACATTGTTTGCT CTCGGTTCAAGCATGGTGCGCCTCCGAAGGCCAGCAGCTGCCTGGGACGG TTCAAAGGAGGCGACGTTAAGACCGCCACGAACGCGGGTCCAACCTCGAG GGACTGGTGTGTTGGCAACGGGCAAGGGAAATTGGTTGAGTTATTCACAA ACCCACAGGCCAAAGCAGGCGGCGGTCTAGCCGGCGACGGCGACGTCACC TTGGCGGTAATACTGTACTTCTTCGACCTCGAGGGCAACCGCCGCCTTGA TTCCATAGCAGCGGCTTCGGGCCCCATGATGGAGTACGTACTTGTCTACG AGTACGTGACCTGCGGAACTGAACGTTCGTCGACATGTGCACATGCATCA CATCTGCCCAACGTCGTGCTACAAAACGGGGGCTGCACACTCTGCAGCCT CGCCGGTTCAGTCTTGCGGTCTTCGCGACGACGACGTAGCCAAAGGTGGC GGGAAGATTTGGAAGCACCACTACAACTTCGCCGCTGCCAATACGCCGAA CGGGAAGAGAAACGCCTACATGCTGAACGAGCATTGGAAGAGTGCATTC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1050:17484..21832-

>mRNA_P-littoralis_Contig1050.1.1 ID=mRNA_P-littoralis_Contig1050.1.1|Name=mRNA_P-littoralis_Contig1050.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=486bp|location=Sequence derived from alignment at P-littoralis_Contig1050:17484..21832- (Pylaiella littoralis U1_48)
ATGTACGATCAACCACGGTGCTTATGGGATCTGACGTCTGCACACTCGCC
CGTGTTTTCGTGCGGCCCCGAGCTTCTCCACCTGGACTTTCTGAACCACC
TTGGGGGCGTAAAATCTTTCTTCCTCTGTTTACTTTCGCGACCTCGCCGC
GCGCATGTCGCGGGAGTAATTCGCCAGCGACGCACGCTTTTTGGCCCGGG
AGCGCTGCCACTGAAAGATCCTGTGAAGGACTACACCAGGTACACAGGCG
CACACAAGGGTCTTCTCGGAAAGTGTCCAGCTACTGGTGTTTCGCGGTCC
ACTCGCATCCGCCGCTACGATGAAGCACTTTTTGAACTCCACGGCGCTCA
ACACACTGAACAGCGAAGTATGGGGCGACCTGAACGACGAGGGTGTGTTG
GATCGGCTGCGCCAATATCTCCAAGCATCATCTGCCCTCACGTTTGCCGC
ACGCGGCCAGGTCTTCTCGGACTCTCACCTACGTGA
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