mRNA_P-littoralis_Contig105.124.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig105.124.2
Unique NamemRNA_P-littoralis_Contig105.124.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig105.124.2 vs. uniprot
Match: D7G6E9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6E9_ECTSI)

HSP 1 Score: 287 bits (735), Expect = 7.990e-90
Identity = 192/262 (73.28%), Postives = 208/262 (79.39%), Query Frame = 1 
Query:    1 MADDDIDLDAMLESALDEGFAVPAAAETGDEDVGDXXXXXXXXEAMVASVLEGGNGDGDVTAEKSRASSDFGPSQQWLQRRQGGRGNDTAGGAREVFAFLRPQRKEAWEAALAEDGERQADMDKQRPFSRAYRSFYSAGREEGGIVVHLGSGAXXXXXXXXXXXXXXXXXXXXXXXXXVPLDVDEGG-GGPADGIFEDVLSKGVSSSGVEEPPMIGEGDYEALDRLKASYLGLVAKDVRARVSKDPDVSMDRFPGIVWKILT 783
            MADDDIDLDAML+SALDEGFA P  A  G E  G XXXXXXXX AMVAS   G        A+++RASSDFGPSQQWLQR+QGG GN TAGGAR  F+FLRP+R+EAW+AA AEDG+ QADMDKQRP SRAYRSFYSAG+EEGGIVVHLGSGA          XXXXXXXXXXXXXX       EGG GG AD IFEDVLSKGVSSSGV+EPP++GE D+EALDRLKASYL LVAKDVRARVSKDPDVS DRFP I  KIL+
Sbjct:    1 MADDDIDLDAMLDSALDEGFADPPEA-GGAEGDGXXXXXXXXXXAMVASAPGG------AAAKEARASSDFGPSQQWLQRKQGGGGNGTAGGARNGFSFLRPERREAWKAAFAEDGKLQADMDKQRPLSRAYRSFYSAGKEEGGIVVHLGSGAAEGAAQGKGVXXXXXXXXXXXXXXA------EGGKGGAADDIFEDVLSKGVSSSGVKEPPVVGEADFEALDRLKASYLRLVAKDVRARVSKDPDVSADRFPCITSKILS 249
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig105.124.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G6E9_ECTSI7.990e-9073.28Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig105contigP-littoralis_Contig105:537263..543218 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1848
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-10_001600.1
Cds size786
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig105.124.2prot_P-littoralis_Contig105.124.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig105 538325..543218 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789386.8068464-UTR-P-littoralis_Contig105:537262..5383241680789386.8068464-UTR-P-littoralis_Contig105:537262..538324Pylaiella littoralis U1_48UTRP-littoralis_Contig105 537263..538324 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789386.8169265-CDS-P-littoralis_Contig105:538324..5384321680789386.8169265-CDS-P-littoralis_Contig105:538324..538432Pylaiella littoralis U1_48CDSP-littoralis_Contig105 538325..538432 -
1680789386.827112-CDS-P-littoralis_Contig105:539122..5392111680789386.827112-CDS-P-littoralis_Contig105:539122..539211Pylaiella littoralis U1_48CDSP-littoralis_Contig105 539123..539211 -
1680789386.8386025-CDS-P-littoralis_Contig105:539537..5397691680789386.8386025-CDS-P-littoralis_Contig105:539537..539769Pylaiella littoralis U1_48CDSP-littoralis_Contig105 539538..539769 -
1680789386.8496525-CDS-P-littoralis_Contig105:542023..5421831680789386.8496525-CDS-P-littoralis_Contig105:542023..542183Pylaiella littoralis U1_48CDSP-littoralis_Contig105 542024..542183 -
1680789386.859208-CDS-P-littoralis_Contig105:543021..5432181680789386.859208-CDS-P-littoralis_Contig105:543021..543218Pylaiella littoralis U1_48CDSP-littoralis_Contig105 543022..543218 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig105.124.2

>prot_P-littoralis_Contig105.124.2 ID=prot_P-littoralis_Contig105.124.2|Name=mRNA_P-littoralis_Contig105.124.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=262bp
MADDDIDLDAMLESALDEGFAVPAAAETGDEDVGDIDLDAMLDEAMVASV
LEGGNGDGDVTAEKSRASSDFGPSQQWLQRRQGGRGNDTAGGAREVFAFL
RPQRKEAWEAALAEDGERQADMDKQRPFSRAYRSFYSAGREEGGIVVHLG
SGAAAAATNGAEEALQRGAAGGVGGGGGVPLDVDEGGGGPADGIFEDVLS
KGVSSSGVEEPPMIGEGDYEALDRLKASYLGLVAKDVRARVSKDPDVSMD
RFPGIVWKILT*
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mRNA from alignment at P-littoralis_Contig105:537263..543218-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig105.124.2 ID=mRNA_P-littoralis_Contig105.124.2|Name=mRNA_P-littoralis_Contig105.124.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=5956bp|location=Sequence derived from alignment at P-littoralis_Contig105:537263..543218- (Pylaiella littoralis U1_48)
ATGGCCGACGATGACATCGATCTCGATGCGATGCTGGAATCGGCGCTCGA
CGAAGGGTTCGCCGTCCCGGCTGCTGCGGAGACAGGCGATGAAGACGTTG
GTGACATCGATTTGGACGCAATGCTCGACGAGGCAATGGTAGCCTCCGTG
CTGGAGGGTGGTAATGGCGATGGAGATGTAACGGCGGAGAAATCAAGGTC
TGTAGCTACCAATTGTCCGGTGACAGCTCGTATTTCTGCTGTCATGCCGT
TGACATTCTTCGCTCGATGGGTAGGTGCGTGCGACAGGTAACCTTCGAAC
TGCTCCAATTGCCGTCCACATTCCGCCCGAAACCAACAGAACACGTGCTC
AATGCCATGACATCCGGATGGCCACAACCGTACAACAGCTGCAGCAAGAG
ATGTTGTACCTGAGCATACGTATAATAGGTACCGGCAGAATCGTCGCAAT
CAGAGCGGTAACATGCACGCTCGCGGGCAAAATATAGGCTACATGAAGTG
CTGTGATGTCGCAAACACGACGCAGCATGGCAGCGTACAAGCGTAGCTCG
GTAGCTGGTGCTGGCTGGCCAAGAGACGGAGCGGTACGCCGCGCTAATCA
CGAAGGCAGCACAGGAACACAGGCAAAGGGTAGTACCTCTGTAAACTCTC
GTGCGTCTCATCTCCGATAAACTGCCGGCTTGGACATGTTCATTCATCAT
GCAAAAGGTCAAGTCAGGTAAGGTCGGAGAGGATCGGAGTGGCGAGGTTT
GGACTTGGCCGAACGACGGCCGCTTCCATTTCCGCACGTGTGTGTGTGAC
ATCGCCAACTCATTCTTATCCTGCTGTGCCGGGTTGGGACGCATGGCTCC
AATACTACCGACTGCATGGTGTTGGTTCTGCTCCGGCCCACCAAAGGGGC
CGCCCCGCACCCTTTCCCTGCCAGAAACAATCCGCAAAACACTGCTATAT
CGTTGCTTTAGTCGTATCATATCATATCGTTTCGTCAAGAACACTTGATG
AGCTGATGTATCTCCGTCGCACGCCGTGCACCCAGGGCAAGTAGCGACTT
CGGTCCTTCGCAACAGTGGCTGCAACGCAGGCAGGGGGGGAGGGGGAATG
ATACGGCGGGGGGCGCGAGGGAGGTGTTTGCGTTTTTGAGGCCACAGAGA
AAGGAGGCGTGGGAGGCGGCGCTGGCAGAGGATGGTGAACGGCAGGTGGG
CAACGGCGATCTTCGCTGTAGTGACGAATTCTTCGCATTTCTTTTTCTGG
ACCTTCGTACATCCTGCGCCGAAAGTCCCGATACGTAATGTGCAGGTATG
GACGCGCTCCCCTCCCGGCCTACAAGGGCATGTCGAGCGTGTGATATTGT
CTCTGACCGTATCGCTACCCGCATCCATGAGAAGCCTGTAGATTCCAGGT
GGATGTGGTGAAGAGCAGCTGACGATAACATGTGAAGGGGGTCCGCTTCC
CCCCGGCCTTCTGGCTCGCCTCAAGCAAAGGGACCATGGAATGAAGGACT
AAAGTGACAGCAATAAATCGGGGTAATGGGTCGGCCAAGGGGCAAATATC
CTATGATAGTGTGTGCTGGGCACCACAATTTGACCATCTGAACTAATCTT
TTTTCGAGTCCGGGTTACTCGATGCGGGTGAGTGCTGTAGTGTTTGTTGC
CCACCCGCCACGCACGCAGCAGTCAGTTGTACAAAACTGTCCCTCACGTG
CCAACATAAGAACAACGCGCAAGGGGTACGCTGGCGAGCGCTTCCTGCAA
CATAATACGACGCAAAGTCAACGGTAGTTCTCACATTCACCTACATAATT
CACACAATCGTACCTAGTAACTACAGAGGCAGTGCAGGTTTGTGTGCGTG
TGATAAAGCAGTGGGACATCAGAGACCAGCAACAACAGACAAGACAGCGA
ATGAAGGATACGCTGCACACAACAGTAGCATATCATGTGCAAGCGAAGAA
CACACGACTATCCCAACAATAGCACACAGGGGTGCGCCGATGAGCACTCC
CCACCACGTTTGCCGCGATGTCAATTACATTCTCAAAGTAGATACCAGAA
GGTTTTCGCGTGGAAAGAGAGAACAGCAGACAGCAGCAGCAGTTGTGGCT
GCGCTAGACAGGCCAAAGGTCCATGCCTCGAGGGGCTCAAAGACGCGCAG
AAACAAAAAAAAACTTGAAACAAGGGAACAGGAGCATCTGAGGTGGACGG
TCGAATCTATACTGAATGAAGAGAGCAGCTGGCAACACACCAGCACCAGA
CACTGCACGTTGCGAGCTCTGTCGGCGACAGAATAGCGGCCGGGCTGTCC
TGATACTATCCACCAACAAAGCCAGCCTATCGCGGGCCTTCGCAGCGGCC
CCGGTTTGTGTTTTGTTCGTGCTGTGGCTGGTGGGCTGGTGCACTTTGCC
AGCAGATGCACACTTTGAGAGCGGCAAGACTGCCCGTGTTCGCTGTGTGC
GCCCTTTGAAATGTACGGATAGGAATATTTTTGCTCGACAACAACAAACT
GCGTAAAGCCAGGCTACGACTGCTGTGGTCCCTGCGAGGAGCCTGGTACC
AGGAGAGTTGAGACTGAAACGTCGGAGCCAACGCTGCTGAACGAAATTGA
GGAAGAATCATGCGGACGATCCGTGGGCTGAAGATGGTTTGTCGCACATC
CACACTGGCAGACATTCCGAATTTCGAATATATTCTACAGTATCGTACGC
CTTCCCATAGGAAATCCCTTCTAGAATCCAGTGAGCAATTCTAAGGTTAA
ATTGAAATCAAGCACATTTTCTAGGAAAATTTGCCGCTGCGTCTTAGTAA
TTGCCCGCGCGATTTTTCATGTGGATTCACATATGATAGGTGTATCTTTT
TCAGCGTAGCATACTTGGTTCATATTCAGATACAGCAGCACTGCTGTGCG
CCACAAACATACCCCCGCCTAGCCCTACCTGTTGGATGACCTAAAGCCAC
ACAGATGGCCAAGCCGCAAAACACCTGTTTGTCGGTCGGCGAGCGGCAAC
TGCTGTGACGGGAAGCCTCCAAATTTCCAAATGGCTGCTGTCGTAACGTG
CACTTACACGAGGATATCCAAATCTCCAAATCTCCACCTGTCCTTCTGTG
GAGTACCGAGTGACATCAGATGAACATATCAAGTAGGTCGACGCTTTCAT
CCACACATGCAAAAAAGTGCGCGCGACATGCCGAAGTGCGCCTCACGAGG
GAAATTTTTTAGGATGCAGCTCGCCCTTTGGCGACTCGCCCAATTGGCGA
CTCGCCCGACACCTCACGGCGCTTCGCGCTTGGGGCGATACGAGCCTGGT
CCGGTGAAAACCCGGCGTGGTCCTTCCTGGCTTTGTAGGGATGCGAGGAT
TTTTGTCTGGCGAGCACGGCATTCATGACCATAAGCACGCCCTCCCCGGC
GCCCCACCCCCGCGCTTTCTTTCTCTGCCTTTTCTCACGGCATTCACAGG
CGGATATGGACAAGCAACGTCCCTTCAGCCGAGCCTACCGGTCCTTCTAT
TCCGCCGGCAGGGAAGAAGGAGGGATCGTGGTTCATCTCGGTTCGGGCGC
TGCCGCTGCTGCCACGAACGGTGCGGAGGAAGCGTTACAACGAGGCGCGG
CAGGGGGAGTGGGGGGAGGAGGAGGAGTGCCACTTGATGTGGATGAGGGA
GGCGGGGGACCAGCGGACGGCATCTTTGAAGGTGAGGTGGGCGGGTATGG
GTGCGTGTTCAGGTAAAAGCGGCCTTGCTTAAGTCTTGACAAACACCGAC
AATGATGGCAGTCGCGAACCTGACCTGGGCGGATTGGTGTCGGTGCACAG
CTTTCGAGATGTTGTTTAATGGTTGGGTTTCATTACACCTTTGGCCATGT
TTTGAGTACACACCTCTAGTGACACGGTTGGCATCCATACTCATTTATTC
CGCCGCTAGTTGTTACGTCGTCGCCGAAGTTGCGTACTATGACGATACGC
GGTGTGTTTACACCCTCTCGATGCAATCGCCATTCGGCGTGTTCGTGCCT
CTCTCAGATGTTTTGAGTAAAGGAGTGTCGAGCTCGGGCGTGGAGGAGCC
GCCCATGATAGGAGAAGGAGACTACGAAGCCTTAGATCGACTGAAGGTGA
AGAGGCATGCACAGGCGCGGCGTACTCACTTTTGTTCACGTGCCTCGCGT
AGGTTGATCGTCGGCCACACTTTCGAGACCGACATCACTGATGACGAGAG
GAAGGAGGAGTGCTTTTGCGGAATATAGAATCGATCATGTGCATAGCCCA
GTGTAAATATTGTTACGATGGTCCCAACGCCTTTGAAGACGTACCGTGCA
TTCGATGTTGGTCCGCATGCCTATGGCCACACCCCTAAGTGGGCCTTGGT
CATGCTGCACAAATCCAAAGAACTGCCGTGTCTGACTGCTATTTAGATGG
GGCGCTTGTTTGTGTGCGCTGGAGTTTTTTTCTCACGTGGCTACCACCTC
TCTTGTCTGAGTGCCGTGTACTGTGACGTTTGTTCAAATGTGTTTTGAGG
TGCGCTTCGTGCCGCCCTTGTTTTTTCACCGAGTCTTGCTGGCTGTAATT
TGTGAGCCGACTGTTTTACCGCCTTTCCTCTTGTATGCGAATAAATCGGT
ATGGAGGTCGAGCCGTACCAATCCTCTCCCATCGTGTTGGCCCACCGGGC
ATGTATCAGCCCTCCCTCCGAAAACGTGCGTAAAATCGTGGATTGATGCA
ACAGAAACGGGGTGTCATCCTGACGCTCGAACGCACACACCTCCTCCGAC
CTCCCTGACTTTTCTCGTTTCGTTTTTCCACGACAGGCGTCGTACCTCGG
ACTCGTGGCGAAGGACGTGCGAGCAAGGGTTAGCAAAGACCCGGACGTGT
CGATGGACAGGTTCCCGGGTATCGTTTGGAAGATTCTCACGTAGTGCGCG
TGCTGTGTCCCATTTCCCTCACCATTGCTTCCGAGGCACCCGATGAATCT
GGAAGCCTTCACTGCATTCGAGATCCCGTCGGGACGCAAGAAGTTTGTTG
CTCGTGTACACTATTTCTCTGCTGGTGGACACATTTTCCGACGTGTTGTA
TACCAGGTACAAAATATTGTATCGGGCACGGGTATGGCGCCGTTTAGGTG
ATTCTGTGTTCCGTCCCGCTGCCTTCTAGGGGTGATATTATCGTTTGGGT
GGGTTCATCTGCTTCCGTTGTGCTGGTGACACGCGGAGTCGACAGTTCAT
CAACGCCGAGTATCTTGCCTCAGTCGGGTATGGAATGTTTCGTGCTGTTG
TCGGACAAGCGTGGGTGTGATAGCAGTAGACAGGGTCACTGCTTTGTTTT
TACGTTTCTACCAACCCAAATTGGATGCACGAACTGGTGGTCTGACTTCG
GCGTGTCTTCGACTTCAATTTTCATCCTAAACTTGCAGCACAAGTCGACA
ACCGGTTTGGACTCTTCGCAACAAGATGTTGCCCACAAGAAAGCTAACCC
TGTGGCCGATGAAGAGTGAACATGAAACGTACGAAAGACCGACATGATGC
ATCAAACAACATCCCCAACCATCTCTTAGAAAACAGAGTGCATGTGCGAA
AAGCTGATGCAGCAATACCTGATTAAAACATCGCTCCCTCCCGTTTGTTT
CGGTACAAGTACTCGTATGTGGATTAAAAGCGACCATGCGAATGTGACCC
CGGCTGAACATCAAGGATATCTACGGGTGGTTGTATACAAGTATAGACAG
GCGCTACGTAAAAAAATGGGACGAACACACATACTCACACTCCGCACGTC
GGAAGGAGTGATACCTCAATACGTTTCGTCTGTTGATCATGTAGTTACTG
AATCATCGCCCTGGTTTGCGTTTGCCTTGGTCTGTCATGGCCCTGGTCCC
TGGTTCGATGTACGAAGTACTTCGAAGTATATGGTTATGGTTGAGGTTTG
TCTTGGTTATCTTTTGTTTGTCGGACTGTTTCCAATTTTTGTTTTTCTTT
CGAGCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig105:537263..543218-

>mRNA_P-littoralis_Contig105.124.2 ID=mRNA_P-littoralis_Contig105.124.2|Name=mRNA_P-littoralis_Contig105.124.2|organism=Pylaiella littoralis U1_48|type=CDS|length=786bp|location=Sequence derived from alignment at P-littoralis_Contig105:537263..543218- (Pylaiella littoralis U1_48)
ATGGCCGACGATGACATCGATCTCGATGCGATGCTGGAATCGGCGCTCGA
CGAAGGGTTCGCCGTCCCGGCTGCTGCGGAGACAGGCGATGAAGACGTTG
GTGACATCGATTTGGACGCAATGCTCGACGAGGCAATGGTAGCCTCCGTG
CTGGAGGGTGGTAATGGCGATGGAGATGTAACGGCGGAGAAATCAAGGGC
AAGTAGCGACTTCGGTCCTTCGCAACAGTGGCTGCAACGCAGGCAGGGGG
GGAGGGGGAATGATACGGCGGGGGGCGCGAGGGAGGTGTTTGCGTTTTTG
AGGCCACAGAGAAAGGAGGCGTGGGAGGCGGCGCTGGCAGAGGATGGTGA
ACGGCAGGCGGATATGGACAAGCAACGTCCCTTCAGCCGAGCCTACCGGT
CCTTCTATTCCGCCGGCAGGGAAGAAGGAGGGATCGTGGTTCATCTCGGT
TCGGGCGCTGCCGCTGCTGCCACGAACGGTGCGGAGGAAGCGTTACAACG
AGGCGCGGCAGGGGGAGTGGGGGGAGGAGGAGGAGTGCCACTTGATGTGG
ATGAGGGAGGCGGGGGACCAGCGGACGGCATCTTTGAAGATGTTTTGAGT
AAAGGAGTGTCGAGCTCGGGCGTGGAGGAGCCGCCCATGATAGGAGAAGG
AGACTACGAAGCCTTAGATCGACTGAAGGCGTCGTACCTCGGACTCGTGG
CGAAGGACGTGCGAGCAAGGGTTAGCAAAGACCCGGACGTGTCGATGGAC
AGGTTCCCGGGTATCGTTTGGAAGATTCTCACGTAG
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