mRNA_P-littoralis_Contig1045.3.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1045.3.1
Unique NamemRNA_P-littoralis_Contig1045.3.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1045.3.1 vs. uniprot
Match: A0A6H5KLW1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLW1_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 8.050e-17
Identity = 40/74 (54.05%), Postives = 52/74 (70.27%), Query Frame = 1 
Query:   13 CSTAHTHELLLRKSAAQQGVVLEKGSKLLPCVGCSLAKGISAPIHKTTACRSDKKLGRVFVDLTGKQPVKSIGE 234
            C+  H+HE+LLR +A QQG  L    +L  C+GCS AKG+S PI   T+ R+DKKL RVFVDL+GK   +S+GE
Sbjct:   12 CAHGHSHEVLLRTTAKQQGTTLV--GELRECLGCSTAKGLSKPIPNKTSTRADKKLQRVFVDLSGKARGQSLGE 83
[Close]
BLAST of mRNA_P-littoralis_Contig1045.3.1 vs. uniprot
Match: A0A6H5KSX8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSX8_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 4.810e-14
Identity = 39/73 (53.42%), Postives = 51/73 (69.86%), Query Frame = 1 
Query:   13 CSTAHTHELLLRKSAAQQGVVLEKGSKLLPCVGCSLAKGISAPIHKTTACRSDKKLGRVFVDLTGKQPVKSIG 231
            C+  H+HE+LLR +A QQG  L    +L  C+GCS AKG+S PI   T+ R+ KKL RVFVDL+GK  V+S+G
Sbjct:  137 CAHGHSHEVLLRTTAKQQGTTLV--GELRECLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLG 207
[Close]
BLAST of mRNA_P-littoralis_Contig1045.3.1 vs. uniprot
Match: A0A6H5K9N5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9N5_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 1.050e-13
Identity = 39/73 (53.42%), Postives = 51/73 (69.86%), Query Frame = 1 
Query:   13 CSTAHTHELLLRKSAAQQGVVLEKGSKLLPCVGCSLAKGISAPIHKTTACRSDKKLGRVFVDLTGKQPVKSIG 231
            C+  H+HE+LLR +A QQG  L    +L  C+GCS AKG+S PI   T+ R+ KKL RVFVDL+GK  V+S+G
Sbjct:  305 CAHGHSHEVLLRTTAKQQGTTLV--GELRECLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLG 375
[Close]
BLAST of mRNA_P-littoralis_Contig1045.3.1 vs. uniprot
Match: A0A6H5JF07_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF07_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 1.080e-13
Identity = 39/73 (53.42%), Postives = 51/73 (69.86%), Query Frame = 1 
Query:   13 CSTAHTHELLLRKSAAQQGVVLEKGSKLLPCVGCSLAKGISAPIHKTTACRSDKKLGRVFVDLTGKQPVKSIG 231
            C+  H+HE+LLR +A QQG  L    +L  C+GCS AKG+S PI   T+ R+ KKL RVFVDL+GK  V+S+G
Sbjct:  320 CAHGHSHEVLLRTTAKQQGTTLV--GELRECLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLG 390
[Close]
BLAST of mRNA_P-littoralis_Contig1045.3.1 vs. uniprot
Match: A0A6H5KGN1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGN1_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 1.150e-13
Identity = 39/73 (53.42%), Postives = 51/73 (69.86%), Query Frame = 1 
Query:   13 CSTAHTHELLLRKSAAQQGVVLEKGSKLLPCVGCSLAKGISAPIHKTTACRSDKKLGRVFVDLTGKQPVKSIG 231
            C+  H+HE+LLR +A QQG  L    +L  C+GCS AKG+S PI   T+ R+ KKL RVFVDL+GK  V+S+G
Sbjct:   12 CAHGHSHEVLLRTTAKQQGTTLV--GELRECLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLG 82
[Close]
BLAST of mRNA_P-littoralis_Contig1045.3.1 vs. uniprot
Match: A0A6H5JMU6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMU6_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 1.150e-13
Identity = 39/73 (53.42%), Postives = 51/73 (69.86%), Query Frame = 1 
Query:   13 CSTAHTHELLLRKSAAQQGVVLEKGSKLLPCVGCSLAKGISAPIHKTTACRSDKKLGRVFVDLTGKQPVKSIG 231
            C+  H+HE+LLR +A QQG  L    +L  C+GCS AKG+S PI   T+ R+ KKL RVFVDL+GK  V+S+G
Sbjct:  341 CAHGHSHEVLLRTTAKQQGTTLV--GELRECLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLG 411
[Close]
BLAST of mRNA_P-littoralis_Contig1045.3.1 vs. uniprot
Match: A0A6H5JJ64_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ64_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 1.160e-13
Identity = 39/73 (53.42%), Postives = 51/73 (69.86%), Query Frame = 1 
Query:   13 CSTAHTHELLLRKSAAQQGVVLEKGSKLLPCVGCSLAKGISAPIHKTTACRSDKKLGRVFVDLTGKQPVKSIG 231
            C+  H+HE+LLR +A QQG  L    +L  C+GCS AKG+S PI   T+ R+ KKL RVFVDL+GK  V+S+G
Sbjct:  868 CAHGHSHEVLLRTTAKQQGTTLV--GELRECLGCSTAKGLSKPIPNKTSIRAIKKLQRVFVDLSGKARVQSLG 938
[Close]
BLAST of mRNA_P-littoralis_Contig1045.3.1 vs. uniprot
Match: A0A6H5L8P7_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8P7_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 1.160e-13
Identity = 39/73 (53.42%), Postives = 51/73 (69.86%), Query Frame = 1 
Query:   13 CSTAHTHELLLRKSAAQQGVVLEKGSKLLPCVGCSLAKGISAPIHKTTACRSDKKLGRVFVDLTGKQPVKSIG 231
            C+  H+HE+LLR +A QQG  L    +L  C+GCS AKG+S PI   T+ R+ KKL RVFVDL+GK  V+S+G
Sbjct:  334 CAHGHSHEVLLRTTAKQQGTTLV--GELRECLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLG 404
[Close]
BLAST of mRNA_P-littoralis_Contig1045.3.1 vs. uniprot
Match: A0A6H5L060_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L060_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 1.170e-13
Identity = 39/73 (53.42%), Postives = 51/73 (69.86%), Query Frame = 1 
Query:   13 CSTAHTHELLLRKSAAQQGVVLEKGSKLLPCVGCSLAKGISAPIHKTTACRSDKKLGRVFVDLTGKQPVKSIG 231
            C+  H+HE+LLR +A QQG  L    +L  C+GCS AKG+S PI   T+ R+ KKL RVFVDL+GK  V+S+G
Sbjct:  321 CAHGHSHEVLLRTTAKQQGTTLV--GELRECLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLG 391
[Close]
BLAST of mRNA_P-littoralis_Contig1045.3.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 1.180e-13
Identity = 39/73 (53.42%), Postives = 51/73 (69.86%), Query Frame = 1 
Query:   13 CSTAHTHELLLRKSAAQQGVVLEKGSKLLPCVGCSLAKGISAPIHKTTACRSDKKLGRVFVDLTGKQPVKSIG 231
            C+  H+HE+LLR +A QQG  L    +L  C+GCS AKG+S PI   T+ R+ KKL RVFVDL+GK  V+S+G
Sbjct:  515 CAHGHSHEVLLRTTAKQQGTTLV--GELRECLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLG 585
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1045.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KLW1_9PHAE8.050e-1754.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSX8_9PHAE4.810e-1453.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9N5_9PHAE1.050e-1353.42Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JF07_9PHAE1.080e-1353.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KGN1_9PHAE1.150e-1353.42Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JMU6_9PHAE1.150e-1353.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJ64_9PHAE1.160e-1353.42CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5L8P7_9PHAE1.160e-1353.42Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5L060_9PHAE1.170e-1353.42Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JZQ8_9PHAE1.180e-1353.42Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1045contigP-littoralis_Contig1045:2701..2997 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size297
Hectar predicted targeting categoryother localisation
Exons1
Cds size297
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789380.6656811-CDS-P-littoralis_Contig1045:2700..29971680789380.6656811-CDS-P-littoralis_Contig1045:2700..2997Pylaiella littoralis U1_48CDSP-littoralis_Contig1045 2701..2997 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1045.3.1prot_P-littoralis_Contig1045.3.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1045 2701..2997 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1045.3.1

>prot_P-littoralis_Contig1045.3.1 ID=prot_P-littoralis_Contig1045.3.1|Name=mRNA_P-littoralis_Contig1045.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=99bp
MAVACSTAHTHELLLRKSAAQQGVVLEKGSKLLPCVGCSLAKGISAPIHK
TTACRSDKKLGRVFVDLTGKQPVKSIGEAVFYNLPRRQNSNVVGILPAH
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mRNA from alignment at P-littoralis_Contig1045:2701..2997+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1045.3.1 ID=mRNA_P-littoralis_Contig1045.3.1|Name=mRNA_P-littoralis_Contig1045.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=297bp|location=Sequence derived from alignment at P-littoralis_Contig1045:2701..2997+ (Pylaiella littoralis U1_48)
ATGGCAGTAGCTTGCTCCACTGCCCACACCCACGAATTGTTGCTGAGGAA
ATCTGCGGCGCAACAAGGCGTGGTGCTCGAGAAGGGGAGCAAGCTACTGC
CATGCGTGGGGTGCTCGTTGGCGAAGGGCATCAGCGCACCAATTCACAAG
ACCACTGCTTGCAGATCAGATAAGAAACTGGGAAGAGTTTTTGTCGATCT
CACAGGCAAGCAACCCGTAAAATCCATCGGGGAAGCAGTATTCTATAATC
TTCCGCGACGACAAAACTCGAATGTCGTGGGAATACTTCCTGCGCAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1045:2701..2997+

>mRNA_P-littoralis_Contig1045.3.1 ID=mRNA_P-littoralis_Contig1045.3.1|Name=mRNA_P-littoralis_Contig1045.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=297bp|location=Sequence derived from alignment at P-littoralis_Contig1045:2701..2997+ (Pylaiella littoralis U1_48)
ATGGCAGTAGCTTGCTCCACTGCCCACACCCACGAATTGTTGCTGAGGAA
ATCTGCGGCGCAACAAGGCGTGGTGCTCGAGAAGGGGAGCAAGCTACTGC
CATGCGTGGGGTGCTCGTTGGCGAAGGGCATCAGCGCACCAATTCACAAG
ACCACTGCTTGCAGATCAGATAAGAAACTGGGAAGAGTTTTTGTCGATCT
CACAGGCAAGCAACCCGTAAAATCCATCGGGGAAGCAGTATTCTATAATC
TTCCGCGACGACAAAACTCGAATGTCGTGGGAATACTTCCTGCGCAC
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