mRNA_P-littoralis_Contig1044.12.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1044.12.1
Unique NamemRNA_P-littoralis_Contig1044.12.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1044.12.1 vs. uniprot
Match: A0A6H5JTB8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTB8_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 5.750e-14
Identity = 41/82 (50.00%), Postives = 56/82 (68.29%), Query Frame = 1
Query:    4 IARLHLGVDATSCQAERNFSALKLIVSDLRANTSPAKVEKTIFLRLNKHLIPGLGKALRDWDALQAERKAQKEAAANAKNAA 249
            IARL+LG++ATSCQAERNFSAL  ++  LR N  P+KVE+ +F+RLN+HL+      +R+ DA   + KA K   A +  AA
Sbjct:  561 IARLYLGIEATSCQAERNFSALAHLIGQLRCNMLPSKVERMMFIRLNRHLVA----EVRELDAAVVKAKAAKTKVAQSSMAA 638          
BLAST of mRNA_P-littoralis_Contig1044.12.1 vs. uniprot
Match: A0A6H5JGG8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG8_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 5.860e-14
Identity = 41/82 (50.00%), Postives = 56/82 (68.29%), Query Frame = 1
Query:    4 IARLHLGVDATSCQAERNFSALKLIVSDLRANTSPAKVEKTIFLRLNKHLIPGLGKALRDWDALQAERKAQKEAAANAKNAA 249
            IARL+LG++ATSCQAERNFSAL  ++  LR N  P+KVE+ +F+RLN+HL+      +R+ DA   + KA K   A +  AA
Sbjct:  756 IARLYLGIEATSCQAERNFSALAHLIGQLRCNMLPSKVERMMFIRLNRHLVA----EVRELDAAVVKAKAAKTKVAQSSMAA 833          
BLAST of mRNA_P-littoralis_Contig1044.12.1 vs. uniprot
Match: A0A6H5KAS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAS2_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 4.690e-13
Identity = 40/84 (47.62%), Postives = 55/84 (65.48%), Query Frame = 1
Query:    4 IARLHLGVDATSCQAERNFSALKLIVSDLRANTSPAKVEKTIFLRLNKHLIPGLGKALRDWDALQAERKAQKEAAANAKNAAAG 255
            IARL+LG++ATSCQAERNFSA   ++  LR    P+K E+T+F+RLN+HL+      +R+ DA  A+ KA     A +  AA G
Sbjct:  350 IARLYLGIEATSCQAERNFSARSHLIGQLRCKILPSKFERTMFIRLNRHLVA----EVRELDAAVAQAKATATKTAQSSMAAQG 429          
BLAST of mRNA_P-littoralis_Contig1044.12.1 vs. uniprot
Match: A0A6H5KAN7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAN7_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 2.820e-11
Identity = 45/92 (48.91%), Postives = 61/92 (66.30%), Query Frame = 1
Query:    1 LIARLHLGVDATSCQAERNFSALKLIVSDLRANTSPAKVEKTIFLRLNKHLIPGLGKALRDWDALQAERKAQ---KEAAANAKNAAAGGAGV 267
            LIARL  G+++TSCQAERNFSAL  ++  LR++  P KVE+ +FLRLN+  IP + KAL D  A++A + A    +E  A  +  AAG A V
Sbjct:  416 LIARLFHGIESTSCQAERNFSALAFLIGSLRSSMLPGKVERLMFLRLNRLYIPEV-KALHD--AVEANKAAAARCQEKVAQVEAEAAGDAVV 504          
BLAST of mRNA_P-littoralis_Contig1044.12.1 vs. uniprot
Match: A0A6H5JQI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQI6_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 2.900e-11
Identity = 39/83 (46.99%), Postives = 51/83 (61.45%), Query Frame = 1
Query:    4 IARLHLGVDATSCQAERNFSALKLIVSDLRANTSPAKVEKTIFLRLNKHLIPGLGK--ALRDWDALQAERKAQKEAAANAKNA 246
            IARLHLG++ATSCQAERNFSAL  ++ DL  N    +VE+ + +RLNKHL+  +    A   W    A   A+K A A  + A
Sbjct:  557 IARLHLGIEATSCQAERNFSALAHLIGDLCCNMLSHRVERMMLVRLNKHLLAEVRAYDAAVAWARAMAANSAEKSAVAQEERA 639          
BLAST of mRNA_P-littoralis_Contig1044.12.1 vs. uniprot
Match: A0A6H5KJ52_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ52_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 2.950e-11
Identity = 45/92 (48.91%), Postives = 61/92 (66.30%), Query Frame = 1
Query:    1 LIARLHLGVDATSCQAERNFSALKLIVSDLRANTSPAKVEKTIFLRLNKHLIPGLGKALRDWDALQAERKAQ---KEAAANAKNAAAGGAGV 267
            LIARL  G+++TSCQAERNFSAL  ++  LR++  P KVE+ +FLRLN+  IP + KAL D  A++A + A    +E  A  +  AAG A V
Sbjct:  744 LIARLFHGIESTSCQAERNFSALAFLIGSLRSSMLPGKVERLMFLRLNRLYIPEV-KALHD--AVEANKAAAARCQEKVAQVEAEAAGDAVV 832          
BLAST of mRNA_P-littoralis_Contig1044.12.1 vs. uniprot
Match: A0A6H5KDJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDJ6_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 3.880e-11
Identity = 31/51 (60.78%), Postives = 40/51 (78.43%), Query Frame = 1
Query:    4 IARLHLGVDATSCQAERNFSALKLIVSDLRANTSPAKVEKTIFLRLNKHLI 156
            IARLHLG++ATSCQAERNFSAL  ++  LR N    KVE+ + +RLN+HL+
Sbjct:  439 IARLHLGIEATSCQAERNFSALAHLIGTLRCNMLARKVERMMLIRLNRHLL 489          
BLAST of mRNA_P-littoralis_Contig1044.12.1 vs. uniprot
Match: A0A6H5JXV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXV5_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 5.310e-11
Identity = 39/83 (46.99%), Postives = 57/83 (68.67%), Query Frame = 1
Query:    4 IARLHLGVDATSCQAERNFSALKLIVSDLRANTSPAKVEKTIFLRLNKHLIPGLGKALRDWDALQAERKAQKEAAANAKNAAA 252
            IARLHLG++ATSCQAERNFSAL  ++ +LR N  P +VE+ + +RLN+ ++      +R +DA  A  +A++ A  NA  +AA
Sbjct:  453 IARLHLGIEATSCQAERNFSALAHLIGNLRCNMLPHRVERMMLIRLNRRMLD----EVRAFDA--AVSRAREMATKNAAKSAA 529          
BLAST of mRNA_P-littoralis_Contig1044.12.1 vs. uniprot
Match: A0A6H5KJT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJT6_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 5.030e-10
Identity = 38/87 (43.68%), Postives = 53/87 (60.92%), Query Frame = 1
Query:    4 IARLHLGVDATSCQAERNFSALKLIVSDLRANTSPAKVEKTIFLRLNKHLIPGLGKALRDWDAL------QAERKAQKEAAANAKNA 246
            IARL LG++A+SCQAERNFSAL  ++  LR N    KVE+ + +RLN+HL+      +R+ DA       +A + AQK  A   + A
Sbjct:  179 IARLFLGIEASSCQAERNFSALSHLIGHLRCNMLSRKVERMMLIRLNRHLVD----EVRELDAAVSLARAKAAKSAQKSVACQEERA 261          
BLAST of mRNA_P-littoralis_Contig1044.12.1 vs. uniprot
Match: A0A6H5JRT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT6_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 9.060e-10
Identity = 38/87 (43.68%), Postives = 53/87 (60.92%), Query Frame = 1
Query:    4 IARLHLGVDATSCQAERNFSALKLIVSDLRANTSPAKVEKTIFLRLNKHLIPGLGKALRDWDAL------QAERKAQKEAAANAKNA 246
            IARL LG++A+SCQAERNFSAL  ++  LR N    KVE+ + +RLN+HL+      +R+ DA       +A + AQK  A   + A
Sbjct:  744 IARLFLGIEASSCQAERNFSALSHLIGHLRCNMLSRKVERMMLIRLNRHLVD----EVRELDAAVSLARAKAAKSAQKSVACQEERA 826          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1044.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A6H5JTB8_9PHAE5.750e-1450.00Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JGG8_9PHAE5.860e-1450.00Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ec... [more]
A0A6H5KAS2_9PHAE4.690e-1347.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAN7_9PHAE2.820e-1148.91Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JQI6_9PHAE2.900e-1146.99Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJ52_9PHAE2.950e-1148.91Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KDJ6_9PHAE3.880e-1160.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXV5_9PHAE5.310e-1146.99Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJT6_9PHAE5.030e-1043.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRT6_9PHAE9.060e-1043.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1044contigP-littoralis_Contig1044:42366..42685 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog7159.AAEL018049-PA
PFAMsDimer_Tnp_hAT
Model size320
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.6e-05
EggNOG OGsKOG1121@1|root,KOG1121@2759|Eukaryota,3AJC9@33154|Opisthokonta,3BV3P@33208|Metazoa,3DF56@33213|Bilateria,4224I@6656|Arthropoda,3SQFR@50557|Insecta,457VM@7147|Diptera,45JYT@7148|Nematocera
DescriptionhAT family C-terminal dimerisation region
Cds size288
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789380.4864888-CDS-P-littoralis_Contig1044:42365..426531680789380.4864888-CDS-P-littoralis_Contig1044:42365..42653Pylaiella littoralis U1_48CDSP-littoralis_Contig1044 42366..42653 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789380.495544-UTR-P-littoralis_Contig1044:42653..426851680789380.495544-UTR-P-littoralis_Contig1044:42653..42685Pylaiella littoralis U1_48UTRP-littoralis_Contig1044 42654..42685 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1044.12.1prot_P-littoralis_Contig1044.12.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1044 42366..42653 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1044.12.1

>prot_P-littoralis_Contig1044.12.1 ID=prot_P-littoralis_Contig1044.12.1|Name=mRNA_P-littoralis_Contig1044.12.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=96bp
LIARLHLGVDATSCQAERNFSALKLIVSDLRANTSPAKVEKTIFLRLNKH
LIPGLGKALRDWDALQAERKAQKEAAANAKNAAAGGAGVTPDAVL*
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mRNA from alignment at P-littoralis_Contig1044:42366..42685+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1044.12.1 ID=mRNA_P-littoralis_Contig1044.12.1|Name=mRNA_P-littoralis_Contig1044.12.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=320bp|location=Sequence derived from alignment at P-littoralis_Contig1044:42366..42685+ (Pylaiella littoralis U1_48)
TTGATAGCGCGGTTGCACCTAGGCGTTGATGCAACCAGTTGCCAAGCGGA AAGGAATTTTTCCGCCCTCAAGTTGATCGTTAGCGACCTACGTGCGAACA CTTCCCCCGCCAAGGTTGAGAAGACTATTTTTCTTAGGCTTAACAAGCAC CTTATCCCCGGGCTAGGGAAGGCGTTGAGGGATTGGGATGCCTTGCAGGC TGAGCGGAAGGCGCAGAAAGAAGCAGCAGCTAACGCTAAGAACGCTGCGG CAGGTGGCGCGGGTGTTACCCCTGATGCAGTTTTGTAGGAGCGAGACTTC GTTCATGTCTATTTGCAATC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1044:42366..42685+

>mRNA_P-littoralis_Contig1044.12.1 ID=mRNA_P-littoralis_Contig1044.12.1|Name=mRNA_P-littoralis_Contig1044.12.1|organism=Pylaiella littoralis U1_48|type=CDS|length=288bp|location=Sequence derived from alignment at P-littoralis_Contig1044:42366..42685+ (Pylaiella littoralis U1_48)
TTGATAGCGCGGTTGCACCTAGGCGTTGATGCAACCAGTTGCCAAGCGGA
AAGGAATTTTTCCGCCCTCAAGTTGATCGTTAGCGACCTACGTGCGAACA
CTTCCCCCGCCAAGGTTGAGAAGACTATTTTTCTTAGGCTTAACAAGCAC
CTTATCCCCGGGCTAGGGAAGGCGTTGAGGGATTGGGATGCCTTGCAGGC
TGAGCGGAAGGCGCAGAAAGAAGCAGCAGCTAACGCTAAGAACGCTGCGG
CAGGTGGCGCGGGTGTTACCCCTGATGCAGTTTTGTAG
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