mRNA_P-littoralis_Contig1044.11.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1044.11.2
Unique NamemRNA_P-littoralis_Contig1044.11.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1044.11.2 vs. uniprot
Match: A0A6H5KNV0_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNV0_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 1.140e-14
Identity = 76/168 (45.24%), Postives = 102/168 (60.71%), Query Frame = 1 
Query:    1 SFACLTINKKKLVSDLEKILEAAYKKAFVKCSERKALATKLLKRANKEKARKKAXXXXXXXXXXETAEAGKRMRGGKGKQRQXXXXXXXXXXXXXXEIGEVGSSVQWTERGIPNFAGTAAHENRNKRSSKSEVSLSQKARDKMPSFDDFMDALDPDTGKFPLEDLTLT 504
            +FA ++ N+KKLV+ ++KI E  YK+AF   ++R+AL  KL K A++EKAR+K                G+           XXXXXXXXXXXXXX        V WT+RGIP+FAGT  H+ R +R + S  SLS  AR+K+PS D FMD+LD ++GKFPL    +T
Sbjct:  258 AFATMSQNQKKLVTAMKKIPERGYKRAFWLTNKRRALGMKLKKIADEEKARRKKADERNKIQQHRPR--GEVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVVWTDRGIPDFAGTDDHKKRTQRETVSAASLSASAREKLPSLDTFMDSLD-ESGKFPLHGSMMT 422
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BLAST of mRNA_P-littoralis_Contig1044.11.2 vs. uniprot
Match: A0A6H5JJP9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJP9_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 1.930e-13
Identity = 84/168 (50.00%), Postives = 107/168 (63.69%), Query Frame = 1 
Query:    1 SFACLTINKKKLVSDLEKILEAAYKKAFVKCSERKALATKLLKRANKEKARKKAXXXXXXXXXXETAEAGKRMRGGKGKQRQXXXXXXXXXXXXXXEIGEVGSSVQWTERGIPNFAGTAAHENRNKRSSKSEVSLSQKARDKMPSFDDFMDALDPDTGKFPLEDLTLT 504
            +FA ++ N+KKLV+ ++KI E  YK+AF   ++R+ L  KL K A++EKAR K  XXXXXXXXX                  XXXXXXXXXXXXXX        V WT+RGIP+FAGT  H+ R +R + S  SLS  AR+K+PS D FMD LD ++GKFPL  L +T
Sbjct:  374 AFATMSQNRKKLVTAMKKIPERGYKRAFWLTNKRRELGMKLKKIADEEKARLKKTXXXXXXXXXXXXXX-------XXXXXXXXXXXXXXXXXXXXXXXXXXXXVVWTDRGIPDFAGTDDHKKRTQRETVSAASLSASAREKLPSLDTFMDNLD-ESGKFPLHGLMMT 533
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BLAST of mRNA_P-littoralis_Contig1044.11.2 vs. uniprot
Match: A0A6H5KIE0_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIE0_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 2.400e-9
Identity = 35/64 (54.69%), Postives = 46/64 (71.88%), Query Frame = 1 
Query:  313 VQWTERGIPNFAGTAAHENRNKRSSKSEVSLSQKARDKMPSFDDFMDALDPDTGKFPLEDLTLT 504
            V WT+RGIP+FAGT  H+ R +R + S  SLS  AR+K+PS D FMD+LD ++GKFPL    +T
Sbjct:   69 VVWTDRGIPDFAGTDDHKKRTQRETVSAASLSASAREKLPSLDTFMDSLD-ESGKFPLHGSMMT 131
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BLAST of mRNA_P-littoralis_Contig1044.11.2 vs. uniprot
Match: A0A6H5JW40_9PHAE (HTH La-type RNA-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW40_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 3.640e-9
Identity = 35/64 (54.69%), Postives = 46/64 (71.88%), Query Frame = 1 
Query:  313 VQWTERGIPNFAGTAAHENRNKRSSKSEVSLSQKARDKMPSFDDFMDALDPDTGKFPLEDLTLT 504
            V WT+RGIP+FAGT  H+ R +R + S  SLS  AR+K+PS D FMD+LD ++GKFPL    +T
Sbjct:  576 VVWTDRGIPDFAGTDDHKKRTQRETVSAASLSASAREKLPSLDTFMDSLD-ESGKFPLHGSMMT 638
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BLAST of mRNA_P-littoralis_Contig1044.11.2 vs. uniprot
Match: A0A6H5K4K7_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4K7_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 1.520e-8
Identity = 34/61 (55.74%), Postives = 44/61 (72.13%), Query Frame = 1 
Query:  313 VQWTERGIPNFAGTAAHENRNKRSSKSEVSLSQKARDKMPSFDDFMDALDPDTGKFPLEDL 495
            V WT+RGIP+FAGT  H+ RN+R +    SLS  A +K+PS D FMD+LD ++GKFPL  L
Sbjct:   66 VVWTDRGIPDFAGTDDHKKRNQRETVRAASLSASACEKLPSLDTFMDSLD-ESGKFPLHGL 125
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BLAST of mRNA_P-littoralis_Contig1044.11.2 vs. uniprot
Match: D7G3B5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3B5_ECTSI)

HSP 1 Score: 58.9 bits (141), Expect = 2.810e-7
Identity = 34/67 (50.75%), Postives = 46/67 (68.66%), Query Frame = 1 
Query:  301 VGSSVQWTERGIPNFAGTAAHENRNKR----SSKSEVSLSQKARDKMPSFDDFMDALDPDTGKFPLE 489
            V  S  W+ERGIP+F  T A++ RNK+    SS S VSLSQ A++KMPS D FM+A+  ++G F +E
Sbjct:  191 VDESWDWSERGIPDFENTDAYKRRNKKPSAGSSASPVSLSQSAQEKMPSLDQFMEAIGINSGAFAIE 257
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1044.11.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5KNV0_9PHAE1.140e-1445.24DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5JJP9_9PHAE1.930e-1350.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KIE0_9PHAE2.400e-954.69DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5JW40_9PHAE3.640e-954.69HTH La-type RNA-binding domain-containing protein ... [more]
A0A6H5K4K7_9PHAE1.520e-855.74DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
D7G3B5_ECTSI2.810e-750.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1044contigP-littoralis_Contig1044:39984..41606 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size507
Hectar predicted targeting categoryother localisation
Exons2
Cds size504
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789380.4469905-CDS-P-littoralis_Contig1044:39985..403691680789380.4469905-CDS-P-littoralis_Contig1044:39985..40369Pylaiella littoralis U1_48CDSP-littoralis_Contig1044 39986..40369 -
1680789380.4553645-CDS-P-littoralis_Contig1044:41486..416061680789380.4553645-CDS-P-littoralis_Contig1044:41486..41606Pylaiella littoralis U1_48CDSP-littoralis_Contig1044 41487..41606 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1044.11.2prot_P-littoralis_Contig1044.11.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1044 39986..41606 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1044.11.2

>prot_P-littoralis_Contig1044.11.2 ID=prot_P-littoralis_Contig1044.11.2|Name=mRNA_P-littoralis_Contig1044.11.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=168bp
SFACLTINKKKLVSDLEKILEAAYKKAFVKCSERKALATKLLKRANKEKA
RKKAEAEKKAAVEKETAEAGKRMRGGKGKQRQQRGKAKKKEEEEEEEIGE
VGSSVQWTERGIPNFAGTAAHENRNKRSSKSEVSLSQKARDKMPSFDDFM
DALDPDTGKFPLEDLTLT
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mRNA from alignment at P-littoralis_Contig1044:39984..41606-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1044.11.2 ID=mRNA_P-littoralis_Contig1044.11.2|Name=mRNA_P-littoralis_Contig1044.11.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=1623bp|location=Sequence derived from alignment at P-littoralis_Contig1044:39984..41606- (Pylaiella littoralis U1_48)
TCGTTTGCGTGTTTGACGATCAACAAGAAGAAACTCGTCTCCGACCTCGA
GAAGATACTTGAAGCGGCGTACAAGAAGGCGTTTGTCAAATGCAGCGAGA
GGAAGGCTTTGGCTACGAAGGTATGTGATGTAGAAGTACAAGATAGGGAA
TATTTTGTTTTGTGCTCGACACATGCAAGTGTCTGCTTTTGTTTTGTGCT
CAGTAGCCTGTGTGAAGGAAGGGACAATGGTGTTTAAAACTGCTGTTTCT
CGTCAGTGATTCACTGGCAGGGGCGCTTATTGATTTGTCATTGGTTTTTT
GACACTTGCTGCTGTTGGTAACACCACCTACCTGTTGTTCCACGAGTGTT
TTTTTTCTCGCATCGAGTATTGTGTGTGTTGTCATCCCATATTCTCTGGC
ACACTAGTCTGCAAACCACAGGCTAGGCCCATCGACGGGGTCACACAGGA
GGAAAGGTCAACACAGGGGGAGTTACCCCCACCTTCCTTCTGCGGTACAT
GCGTGAGATTTTTTCTCGCGAGCAGGGGTCCGCGGTCCCTACCCTCGTCG
GCGAAGCCGAATCTGCTTTTACTAACAGCGTAGCCGCTTTCAAAGTAGCA
AAGGAACACATTCACCGGGAATCGAACCCCCGTTCCTCTGCATCTAGTGG
TTAACGAGGGACCACTAGTCCACCGGGGCGACCGGTGGTGGCTGTGCTTG
ACCACGGGTACAGCAGCAGCCGATATAAAAACTCGCGCCGTGCATGATTG
TTGTGTGGTGTCAAATACAACAGTACAGCAGTACACAGCCGAGATATTTT
CGCGCCGTGTTTGTTTGTTTTGTGGCATGTGTTTTTTCGCACCACAAAGC
AAACGTGCAAATTTTATCGGCTGCTGCCGTACCTGTTTTATTTTTTAAAC
CACAAACAAACATGCACGGAGCGAAAATTATACTCGTACTTCGTATCGGG
TACTGCTGTAGCTGCGGTGAAGCACGAAAACAATGCCTCGGTGGGCGCAA
AATAAACAAAGCACGCTCGTGAAACGACAGGTGGGGAGACGAACACTGCA
GTTGCTGCTGCGGCGCGCTTGATCAAAGCTCCAGCAGTAGCCGATAGAAA
AATCGCGCCGTGCATGTTTGTTTTGTGTTGTAGACAGTAGTTGAGCGTCA
GTCACCTTGGTGTTCCACAGCAATTCAGATTTTTTATATGTTTTTCCCCA
AACAACCGCTTGTCGCATGATTGGCGTACCTCCACAGCTGCTGAAACGAG
CAAACAAAGAGAAGGCCAGGAAGAAGGCCGAGGCCGAGAAGAAGGCTGCG
GTGGAGAAGGAGACAGCAGAGGCCGGCAAGCGCATGAGGGGTGGCAAAGG
GAAGCAGAGGCAGCAGCGGGGGAAGGCAAAGAAGAAGGAGGAGGAGGAGG
AGGAGGAGATTGGGGAAGTAGGGAGCAGCGTGCAATGGACTGAGCGAGGT
ATCCCCAACTTCGCCGGCACTGCGGCGCACGAGAACCGCAACAAGCGCTC
GTCCAAGAGTGAGGTTTCGTTGTCGCAGAAGGCGCGTGACAAGATGCCTT
CGTTCGACGACTTCATGGATGCCCTTGACCCGGACACCGGCAAGTTTCCG
CTGGAAGATCTGACGCTGACTAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1044:39984..41606-

>mRNA_P-littoralis_Contig1044.11.2 ID=mRNA_P-littoralis_Contig1044.11.2|Name=mRNA_P-littoralis_Contig1044.11.2|organism=Pylaiella littoralis U1_48|type=CDS|length=504bp|location=Sequence derived from alignment at P-littoralis_Contig1044:39984..41606- (Pylaiella littoralis U1_48)
TCGTTTGCGTGTTTGACGATCAACAAGAAGAAACTCGTCTCCGACCTCGA
GAAGATACTTGAAGCGGCGTACAAGAAGGCGTTTGTCAAATGCAGCGAGA
GGAAGGCTTTGGCTACGAAGCTGCTGAAACGAGCAAACAAAGAGAAGGCC
AGGAAGAAGGCCGAGGCCGAGAAGAAGGCTGCGGTGGAGAAGGAGACAGC
AGAGGCCGGCAAGCGCATGAGGGGTGGCAAAGGGAAGCAGAGGCAGCAGC
GGGGGAAGGCAAAGAAGAAGGAGGAGGAGGAGGAGGAGGAGATTGGGGAA
GTAGGGAGCAGCGTGCAATGGACTGAGCGAGGTATCCCCAACTTCGCCGG
CACTGCGGCGCACGAGAACCGCAACAAGCGCTCGTCCAAGAGTGAGGTTT
CGTTGTCGCAGAAGGCGCGTGACAAGATGCCTTCGTTCGACGACTTCATG
GATGCCCTTGACCCGGACACCGGCAAGTTTCCGCTGGAAGATCTGACGCT
GACT
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