mRNA_P-littoralis_Contig1042.11.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1042.11.1
Unique NamemRNA_P-littoralis_Contig1042.11.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1042.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1042contigP-littoralis_Contig1042:77091..79509 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size537
Hectar predicted targeting categoryother localisation
Exons2
Cds size393
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789379.9474726-UTR-P-littoralis_Contig1042:77090..771731680789379.9474726-UTR-P-littoralis_Contig1042:77090..77173Pylaiella littoralis U1_48UTRP-littoralis_Contig1042 77091..77173 +
1680789379.9577496-UTR-P-littoralis_Contig1042:79056..791161680789379.9577496-UTR-P-littoralis_Contig1042:79056..79116Pylaiella littoralis U1_48UTRP-littoralis_Contig1042 79057..79116 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789379.9697723-CDS-P-littoralis_Contig1042:79116..795091680789379.9697723-CDS-P-littoralis_Contig1042:79116..79509Pylaiella littoralis U1_48CDSP-littoralis_Contig1042 79117..79509 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1042.11.1prot_P-littoralis_Contig1042.11.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1042 79117..79509 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1042.11.1

>prot_P-littoralis_Contig1042.11.1 ID=prot_P-littoralis_Contig1042.11.1|Name=mRNA_P-littoralis_Contig1042.11.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=131bp
MKGSRFEDGGGRKFVANKIAGNGDCLFNSVAFAGYGPSCTSMRKVLEKAL
PLRAAVCRVALADLERLLSDGPDGWGSFFRFWQAYDSVVADRLREAELEP
HQDAVTGRFSVEMARVFVLLCVQAMIPDKSY
back to top

mRNA from alignment at P-littoralis_Contig1042:77091..79509+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1042.11.1 ID=mRNA_P-littoralis_Contig1042.11.1|Name=mRNA_P-littoralis_Contig1042.11.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2419bp|location=Sequence derived from alignment at P-littoralis_Contig1042:77091..79509+ (Pylaiella littoralis U1_48)
AAAGAAGGAAAACTGTCGGAGCGGAGTCTGAGAAGCTGAGGAGCTCATCC
CAGTTCAATGTCGTCGCCCTGCATGATATGTAGGTATGTACAACGGCAGA
AATCATGGGACTCTGAAAAGGGTGAGGACTACCAACGCGCCTGAGTTAGG
CCGATGTAGGGCACTATCGTGCATTACGTTAGAGGCACGGTAGCTCCCAC
ACCAACTAGCCTTACAATTGTCACAGCATACGTTTTACGACCGTCTATCC
TCTGACTTGCTGGCCGTGCCTCTTCCTATTCATGTATTGTACCTCCGCCT
TGTTAGATTTTAGATGAACGCAGCCGTAGCTGCGTGGACCCAACCCCATT
TCTCAAACTGAAGCAAGCCGTGTTGTGCCGTTCCTGAAAGCAGCCTGGAA
AAACATTGGTCCTCAAAAACACGAAGCATCGAATGCAGCTGCGGAGGCCG
CTGTGTTCGTGTGTTTCTATCCCATCGGTTTTGGTCACCAGTCTCCACCT
TCCTACATACGTTCGGCTTACCAGCCGCGGTTGGTCTCACACAAGATGAT
GCATTTCAGGAATTCGAGTTTGTTCCAAGAGCTCCTTACCCAATTTAACC
CAACGCTAAATCCGACGCAACCCCATCGGAATCTGCGGTGGAGGAGTGGT
TCATCGCGGAATACTCAAACTGAGCATGCCGATCAAGCAACGCACACACA
TTCAGTTCCAACTGTTGTCGACAGCACTTTGCCACCACATACTCCCAGCC
TTCCATCACAAGACCCATACAACCGCCGCGTGTCTTCGCACATGGTGTGG
TGTGTGGCAGAGCTGCTTGTGGTTGTTGGTCGCTTTTGTGTTGATCTTGC
GCCAAAAGAAAAAACGTTACCTACTGTTAAGAAGGGCTAGGGGGCCTGCT
TAACATAGCGAGGAATTCCACAAAATGATGGCATGACGTGTCGTTTATAT
TTACAAGCCAGCATCCTAGACAACGGGGCCTTGTGAGGCTGAGTGCCCAA
GGTCGTCTGCGGAGCTGTACTTGATCCTGCCCAACGTTATGGGCACACAA
CAGAGGGCAGCGAGTTTGCTCATATTTCGGCGTTGATCGCCAAGTTTTAT
CTGACCCATGAGGGAAACCAGGGTGTGTACCTTGGTGGCTGTACAACCCA
ACAAAATGTGTGAAATTGGTAGCAGCACTACAGAGTTGACGATATGGGCT
CTAAAACGTGGCCTAAAAGCGCCCCAAACCATGATGAACTGCATTTGTTT
ACTAGGTTGAGCATTCTGAAACAGAACAACTCGCAATGTTCCTTGGAATC
AGCAATACATCGATGACGATCAAAAAATGCCCTGAAGGCGACCCAAACCA
CTCTGGACTCTGTGGTTTAATAGGTTGAAATTTCCTTGAAAGTTTTGAAG
CAAGGACAACATGTCTACCTCGAAAAATGTCGCCAACATTTCATTGTTTC
GTGCTCCATAACAACTTTTGATCAAAGTTGTGCACTCGAAGTATTGAATT
TCCGAAACCGGTTGAAACTCGGAGGTTGTGTAGCTTGGTCGATGCACTAC
CCGACAAGCGTAGGTAGAGTTTGGGATTAGCACAACAGCTCGTCAACCAG
CAGATTGATTTGCATGTGTCACAGGAAATTTACGTTGTTCGCTCCATGTA
ATGATAAAATTGGATAAAATTTGTCTTGTCGCTTTAAATAAGAAGGCGAT
TTCATATTGTTTCCTATAGGCAGCAGCACGTGTCTCCGTTGCCGAGGATG
GCATAGTTTAATGAACGTGCGTGGTTAGGGGCTCACTGTCACGAGGCACC
GCGGACAGACAGACTGGCGGAGGACCTAAAGCTTAAAACCACGTGCGCAT
GTGTTCTCCACGAGCCATACAAACTCCAAAACGTGTGTGACTCGATGATT
CATAACTGCAGTTCTTCGTACGTCGCCTACCGTGCGCACGGGTGCGTACT
ACTGTAAACCTGCCAGGGCGGGAGGGTCCCATTCTCCGCGCGCGAGGCGG
CACCTGATATAGTGGCGAACAAGCTAATGAAGGGATCGAGGTTCGAGGAT
GGCGGAGGTCGCAAATTTGTTGCCAACAAAATCGCGGGTAACGGCGATTG
CTTGTTCAACTCGGTTGCGTTCGCGGGCTACGGCCCATCCTGCACCAGCA
TGCGCAAGGTGCTAGAAAAGGCACTACCTCTTCGGGCAGCTGTGTGCAGG
GTGGCACTGGCGGACCTCGAGAGGTTGCTGAGCGATGGCCCGGACGGGTG
GGGTTCGTTTTTTCGCTTTTGGCAGGCGTACGACTCTGTCGTGGCGGACA
GATTACGTGAGGCCGAGCTGGAACCCCACCAAGACGCTGTGACCGGCCGC
TTTTCGGTTGAGATGGCACGTGTGTTTGTCCTCCTTTGTGTCCAGGCAAT
GATCCCGGATAAAAGCTAC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig1042:77091..79509+

>mRNA_P-littoralis_Contig1042.11.1 ID=mRNA_P-littoralis_Contig1042.11.1|Name=mRNA_P-littoralis_Contig1042.11.1|organism=Pylaiella littoralis U1_48|type=CDS|length=393bp|location=Sequence derived from alignment at P-littoralis_Contig1042:77091..79509+ (Pylaiella littoralis U1_48)
ATGAAGGGATCGAGGTTCGAGGATGGCGGAGGTCGCAAATTTGTTGCCAA
CAAAATCGCGGGTAACGGCGATTGCTTGTTCAACTCGGTTGCGTTCGCGG
GCTACGGCCCATCCTGCACCAGCATGCGCAAGGTGCTAGAAAAGGCACTA
CCTCTTCGGGCAGCTGTGTGCAGGGTGGCACTGGCGGACCTCGAGAGGTT
GCTGAGCGATGGCCCGGACGGGTGGGGTTCGTTTTTTCGCTTTTGGCAGG
CGTACGACTCTGTCGTGGCGGACAGATTACGTGAGGCCGAGCTGGAACCC
CACCAAGACGCTGTGACCGGCCGCTTTTCGGTTGAGATGGCACGTGTGTT
TGTCCTCCTTTGTGTCCAGGCAATGATCCCGGATAAAAGCTAC
back to top