mRNA_P-littoralis_Contig104.95.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig104.95.1
Unique NamemRNA_P-littoralis_Contig104.95.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig104.95.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig104contigP-littoralis_Contig104:496629..497425 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size671
Hectar predicted targeting categoryother localisation
Exons2
Cds size336
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789374.1722226-UTR-P-littoralis_Contig104:496628..4969631680789374.1722226-UTR-P-littoralis_Contig104:496628..496963Pylaiella littoralis U1_48UTRP-littoralis_Contig104 496629..496963 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789374.1949568-CDS-P-littoralis_Contig104:496963..4971361680789374.1949568-CDS-P-littoralis_Contig104:496963..497136Pylaiella littoralis U1_48CDSP-littoralis_Contig104 496964..497136 -
1680789374.2120724-CDS-P-littoralis_Contig104:497262..4974251680789374.2120724-CDS-P-littoralis_Contig104:497262..497425Pylaiella littoralis U1_48CDSP-littoralis_Contig104 497263..497425 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig104.95.1prot_P-littoralis_Contig104.95.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig104 496964..497425 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig104.95.1

>prot_P-littoralis_Contig104.95.1 ID=prot_P-littoralis_Contig104.95.1|Name=mRNA_P-littoralis_Contig104.95.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=112bp
GGEPTVDIKWHKAGQLSETLVLGEDYCVILEVSNCWCAETHGDDSSSSSS
SSNDNPFDRGKRFAPCAAWRVMGFVPGGRWIRQNENYNSSVPSAKVSRPV
QACVTLAYYLF*
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mRNA from alignment at P-littoralis_Contig104:496629..497425-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig104.95.1 ID=mRNA_P-littoralis_Contig104.95.1|Name=mRNA_P-littoralis_Contig104.95.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=797bp|location=Sequence derived from alignment at P-littoralis_Contig104:496629..497425- (Pylaiella littoralis U1_48)
GGGGGCGAGCCAACTGTGGACATCAAGTGGCATAAGGCAGGGCAGCTGAG
CGAGACGTTGGTCTTGGGGGAGGACTACTGTGTCATTTTGGAGGTCAGCA
ACTGCTGGTGTGCGGAGACACATGGAGACGACAGCAGCAGCAGCAGCAGC
AGCAGCAACGACAGCGGTGGAGACAGGGACGACGAGTGGTGGAACGTCAC
CTGGGGGAGTACACCAACGCACCCTTTTCGACCCCGGCAAGAGTTCCTCG
AGCAACGCGGAAGAAGAAGGGAGGTCCTCGGGGTGACGCACCCGTTCGAT
CGCGGCAAAAGGTTTGCGCCGTGTGCAGCATGGAGGGTGATGGGCTTCGT
GCCGGGGGGACGGTGGATTCGGCAGAACGAGAACTACAACAGCAGCGTGC
CGTCAGCTAAGGTTTCGAGACCTGTTCAGGCATGTGTTACGCTTGCGTAC
TACTTGTTTTGAATTTGATTTTGTGCGGTTCATCTGTGATATTCCTGATT
TGTTGTGACATTCCCGACATGAGTATGTTTGATTTTGGTGCTTTCCAACT
GTGTGTGTGTTTTTTTTTTTCGCGCGTGTAGAGGCAAAAAATTCGAAGGT
TTGAGGCTGACAGCAGCTAGCTGTGTTGTTTGGCAGCACCGTACATCCGT
GATTGTATGTTTTTGACGGAATATTGCAAACGTTTTGGCGCACGATGGAT
GTGTGTTTCTGATTTTATTTCCAACACAATTTGCAGCGTTTTAAGCGTTG
TCCATGTGCGCAGAGTAGAAGAGCAACATTTGTTTATGGTTGTGTAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig104:496629..497425-

>mRNA_P-littoralis_Contig104.95.1 ID=mRNA_P-littoralis_Contig104.95.1|Name=mRNA_P-littoralis_Contig104.95.1|organism=Pylaiella littoralis U1_48|type=CDS|length=336bp|location=Sequence derived from alignment at P-littoralis_Contig104:496629..497425- (Pylaiella littoralis U1_48)
GGGGGCGAGCCAACTGTGGACATCAAGTGGCATAAGGCAGGGCAGCTGAG
CGAGACGTTGGTCTTGGGGGAGGACTACTGTGTCATTTTGGAGGTCAGCA
ACTGCTGGTGTGCGGAGACACATGGAGACGACAGCAGCAGCAGCAGCAGC
AGCAGCAACGACAACCCGTTCGATCGCGGCAAAAGGTTTGCGCCGTGTGC
AGCATGGAGGGTGATGGGCTTCGTGCCGGGGGGACGGTGGATTCGGCAGA
ACGAGAACTACAACAGCAGCGTGCCGTCAGCTAAGGTTTCGAGACCTGTT
CAGGCATGTGTTACGCTTGCGTACTACTTGTTTTGA
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