mRNA_P-littoralis_Contig104.94.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig104.94.1
Unique NamemRNA_P-littoralis_Contig104.94.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig104.94.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig104contigP-littoralis_Contig104:488126..489598 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1473
Hectar predicted targeting categoryother localisation
Exons1
Cds size1062
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789374.389425-UTR-P-littoralis_Contig104:488125..4885361680789374.389425-UTR-P-littoralis_Contig104:488125..488536Pylaiella littoralis U1_48UTRP-littoralis_Contig104 488126..488536 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789374.400192-CDS-P-littoralis_Contig104:488536..4895981680789374.400192-CDS-P-littoralis_Contig104:488536..489598Pylaiella littoralis U1_48CDSP-littoralis_Contig104 488537..489598 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig104.94.1prot_P-littoralis_Contig104.94.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig104 488537..489598 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig104.94.1

>prot_P-littoralis_Contig104.94.1 ID=prot_P-littoralis_Contig104.94.1|Name=mRNA_P-littoralis_Contig104.94.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=354bp
MPGDWQRECEEIDNARGLAEGESKRSRGTAEGDGGQIDNGSGLAAGQRER
ARGPAESVYTYSAVQQQQQGHQFYRDGQGGGWNGGGTAHGQWVWEPHGGG
FGEQQQELEMVLHQPFLSPQQQQHHQQPQHLVSDVREAANRAELQKKWQR
IDDIREKVERLQEQMIADLTTQRDAEKSARLAAERKITELEAAAAAVRIQ
QDAARFQAEAEEAARLEVGVPEAATAVETRGDGGHLALQCTLGSGEKAAR
LQAESTVEESSLEPAGLLFHRFLEDIAVEETTPLQTRGSSGTRNADDRHG
TGIVSGDGGYSGDVDGPVIAAATAAGTETRVIGPTTAATTGAPTGAGLLT
AASD
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mRNA from alignment at P-littoralis_Contig104:488126..489598+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig104.94.1 ID=mRNA_P-littoralis_Contig104.94.1|Name=mRNA_P-littoralis_Contig104.94.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1473bp|location=Sequence derived from alignment at P-littoralis_Contig104:488126..489598+ (Pylaiella littoralis U1_48)
TCCTCCTCCTTACCTTTCCTCTTCTTCTTCTTTACCTTTATGTCCTGTCT
TCACGTGTGTGGCTAATATTATTTATGGTTCGGTGGACATCACGGTGTGT
GGGTTAACGAAGTTCCTTCATACACTGCTTAAGGATCTCAAACACGATTA
TCGTCTTGGAGCTGCAGCTCCGCGGTGACACTGCGATGTCGGAACCAACG
TCGAAGAGGGTCTGAGGCTGGAATTGGAGACTTCGAGGAGAGAACTAAGG
CTGCACGGGCTGGAATTGCCGAGGGTGCAGCAGCTGGTGGTGGGTTGTAT
AATTAATGCCAGGGGATTGGCAGAGAGAGTGTGAGGAGAGTGAAACTACA
GGCTGTACGGACGGGCTGGAATTGCCGAGGGTGCAGCAGCTGGTTGGTGG
TGGGTTGTATAATGCCAGGGGATTGGCAGAGAGAGTGTGAGGAAATTGAT
AATGCCAGGGGATTGGCAGAGGGGGAGAGTAAAAGGTCAAGAGGTACTGC
CGAGGGTGATGGTGGTCAAATTGATAATGGCAGTGGATTGGCAGCGGGTC
AGAGAGAACGGGCGAGAGGGCCCGCAGAAAGTGTGTATACGTACTCTGCT
GTACAGCAGCAGCAGCAGGGACATCAGTTTTATAGGGATGGACAGGGAGG
AGGATGGAACGGTGGAGGGACCGCGCATGGTCAATGGGTTTGGGAGCCCC
ACGGTGGGGGATTTGGGGAGCAGCAGCAAGAATTGGAGATGGTGCTTCAC
CAGCCTTTCCTCAGCCCCCAACAGCAGCAGCATCATCAGCAGCCGCAGCA
TCTGGTGAGTGACGTGAGAGAGGCAGCTAATCGTGCAGAATTGCAGAAGA
AGTGGCAACGGATTGATGATATCCGCGAGAAGGTAGAGAGGCTCCAGGAG
CAGATGATCGCAGATCTCACCACTCAGCGTGATGCTGAAAAGTCAGCTAG
GCTGGCTGCTGAGAGAAAGATAACAGAGTTAGAAGCAGCAGCAGCAGCAG
TGCGAATACAGCAGGATGCAGCGCGATTCCAGGCTGAGGCTGAAGAAGCG
GCGAGATTAGAGGTCGGCGTCCCGGAAGCAGCGACAGCAGTAGAAACACG
AGGCGATGGGGGCCACTTGGCTCTGCAATGTACACTGGGGTCGGGCGAGA
AAGCAGCTAGGTTGCAGGCGGAGAGTACGGTGGAGGAGTCATCGCTGGAG
CCGGCTGGCCTTCTTTTTCACCGTTTTTTGGAGGATATTGCGGTTGAGGA
AACAACTCCTTTGCAAACGAGGGGCAGCAGTGGAACGAGGAATGCTGATG
ACCGCCACGGTACGGGCATCGTCAGCGGCGACGGCGGCTACAGCGGTGAC
GTCGACGGTCCCGTGATAGCAGCGGCAACAGCAGCGGGGACAGAAACACG
GGTGATAGGCCCAACCACCGCGGCGACGACGGGGGCACCGACAGGGGCGG
GGCTGTTGACGGCGGCAAGCGAT
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Coding sequence (CDS) from alignment at P-littoralis_Contig104:488126..489598+

>mRNA_P-littoralis_Contig104.94.1 ID=mRNA_P-littoralis_Contig104.94.1|Name=mRNA_P-littoralis_Contig104.94.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1062bp|location=Sequence derived from alignment at P-littoralis_Contig104:488126..489598+ (Pylaiella littoralis U1_48)
ATGCCAGGGGATTGGCAGAGAGAGTGTGAGGAAATTGATAATGCCAGGGG
ATTGGCAGAGGGGGAGAGTAAAAGGTCAAGAGGTACTGCCGAGGGTGATG
GTGGTCAAATTGATAATGGCAGTGGATTGGCAGCGGGTCAGAGAGAACGG
GCGAGAGGGCCCGCAGAAAGTGTGTATACGTACTCTGCTGTACAGCAGCA
GCAGCAGGGACATCAGTTTTATAGGGATGGACAGGGAGGAGGATGGAACG
GTGGAGGGACCGCGCATGGTCAATGGGTTTGGGAGCCCCACGGTGGGGGA
TTTGGGGAGCAGCAGCAAGAATTGGAGATGGTGCTTCACCAGCCTTTCCT
CAGCCCCCAACAGCAGCAGCATCATCAGCAGCCGCAGCATCTGGTGAGTG
ACGTGAGAGAGGCAGCTAATCGTGCAGAATTGCAGAAGAAGTGGCAACGG
ATTGATGATATCCGCGAGAAGGTAGAGAGGCTCCAGGAGCAGATGATCGC
AGATCTCACCACTCAGCGTGATGCTGAAAAGTCAGCTAGGCTGGCTGCTG
AGAGAAAGATAACAGAGTTAGAAGCAGCAGCAGCAGCAGTGCGAATACAG
CAGGATGCAGCGCGATTCCAGGCTGAGGCTGAAGAAGCGGCGAGATTAGA
GGTCGGCGTCCCGGAAGCAGCGACAGCAGTAGAAACACGAGGCGATGGGG
GCCACTTGGCTCTGCAATGTACACTGGGGTCGGGCGAGAAAGCAGCTAGG
TTGCAGGCGGAGAGTACGGTGGAGGAGTCATCGCTGGAGCCGGCTGGCCT
TCTTTTTCACCGTTTTTTGGAGGATATTGCGGTTGAGGAAACAACTCCTT
TGCAAACGAGGGGCAGCAGTGGAACGAGGAATGCTGATGACCGCCACGGT
ACGGGCATCGTCAGCGGCGACGGCGGCTACAGCGGTGACGTCGACGGTCC
CGTGATAGCAGCGGCAACAGCAGCGGGGACAGAAACACGGGTGATAGGCC
CAACCACCGCGGCGACGACGGGGGCACCGACAGGGGCGGGGCTGTTGACG
GCGGCAAGCGAT
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