mRNA_P-littoralis_Contig104.78.4 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig104.78.4
Unique NamemRNA_P-littoralis_Contig104.78.4
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig104.78.4 vs. uniprot
Match: A0A6H5LLS0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LLS0_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 6.230e-17
Identity = 49/78 (62.82%), Postives = 59/78 (75.64%), Query Frame = 1 
Query:  853 GGSGIEEEHATVEAALRKIEARQASVTSRCSGMLTAVENNRISLAAMVDRCRVTLDNLQQAESRKLKSSLDRATGLKS 1086
            G SG EE + T  AALR+++ RQAS+ SR S ML  V +N  +L+A+V+RCR  LDNLQQAESRKLKS LDRATG KS
Sbjct:  102 GVSGREEHYETAAAALREMKTRQASMASRRSEMLKEVASNSSNLSAVVERCRAALDNLQQAESRKLKSGLDRATGTKS 179
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BLAST of mRNA_P-littoralis_Contig104.78.4 vs. uniprot
Match: D8LD48_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD48_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 6.450e-17
Identity = 51/78 (65.38%), Postives = 59/78 (75.64%), Query Frame = 1 
Query:  853 GGSGIEEEHATVEAALRKIEARQASVTSRCSGMLTAVENNRISLAAMVDRCRVTLDNLQQAESRKLKSSLDRATGLKS 1086
            G SG EE   T  AALR+IE RQAS+ SR S ML  VE+N  +L+A+V+RCR  LD+LQQAESRKLKS LDRATG KS
Sbjct:  175 GVSGREEHDETAAAALREIETRQASLASRRSEMLKEVESNSSNLSAVVERCRAALDSLQQAESRKLKSGLDRATGTKS 252
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig104.78.4 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LLS0_9PHAE6.230e-1762.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LD48_ECTSI6.450e-1765.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig104contigP-littoralis_Contig104:393977..400008 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1552
Hectar predicted targeting categoryother localisation
Exons7
Cds size1089
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig104.78.4prot_P-littoralis_Contig104.78.4Pylaiella littoralis U1_48polypeptideP-littoralis_Contig104 393977..399545 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789374.0700138-CDS-P-littoralis_Contig104:393976..3942121680789374.0700138-CDS-P-littoralis_Contig104:393976..394212Pylaiella littoralis U1_48CDSP-littoralis_Contig104 393977..394212 +
1680789374.0810885-CDS-P-littoralis_Contig104:394253..3945281680789374.0810885-CDS-P-littoralis_Contig104:394253..394528Pylaiella littoralis U1_48CDSP-littoralis_Contig104 394254..394528 +
1680789374.089557-CDS-P-littoralis_Contig104:394790..3949011680789374.089557-CDS-P-littoralis_Contig104:394790..394901Pylaiella littoralis U1_48CDSP-littoralis_Contig104 394791..394901 +
1680789374.0991852-CDS-P-littoralis_Contig104:395605..3958431680789374.0991852-CDS-P-littoralis_Contig104:395605..395843Pylaiella littoralis U1_48CDSP-littoralis_Contig104 395606..395843 +
1680789374.1113675-CDS-P-littoralis_Contig104:397644..3977491680789374.1113675-CDS-P-littoralis_Contig104:397644..397749Pylaiella littoralis U1_48CDSP-littoralis_Contig104 397645..397749 +
1680789374.1236944-CDS-P-littoralis_Contig104:398795..3988891680789374.1236944-CDS-P-littoralis_Contig104:398795..398889Pylaiella littoralis U1_48CDSP-littoralis_Contig104 398796..398889 +
1680789374.1332073-CDS-P-littoralis_Contig104:399515..3995451680789374.1332073-CDS-P-littoralis_Contig104:399515..399545Pylaiella littoralis U1_48CDSP-littoralis_Contig104 399516..399545 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789374.141046-UTR-P-littoralis_Contig104:399545..4000081680789374.141046-UTR-P-littoralis_Contig104:399545..400008Pylaiella littoralis U1_48UTRP-littoralis_Contig104 399546..400008 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig104.78.4

>prot_P-littoralis_Contig104.78.4 ID=prot_P-littoralis_Contig104.78.4|Name=mRNA_P-littoralis_Contig104.78.4|organism=Pylaiella littoralis U1_48|type=polypeptide|length=363bp
ERPFPDSKAVEKRVSTFKQNKCIICRRQSVSPPARVIQATRTSAPPYIKR
LSFTRNDPDDIGTSLAVTLGVLVVWFGHSCHGQRVGRLQGNTIADRQAGG
RERTSRRAADSASRKARKRKKQFEVASDDAALQGCCSARDPPWRRRRQQF
GVVGGWCRKKNHPPQAAHQAEGCQRSVFPASPSHPETNAGWTRQRGREAV
RLRRPPPGGAIEERRRRRDRHMPHQRRLPWRQRQRQRQRQRQRQQQWSYR
SQNQEGRADGRRCEDHERPEGRSSDGCAEGHGKGGGSGIEEEHATVEAAL
RKIEARQASVTSRCSGMLTAVENNRISLAAMVDRCRVTLDNLQQAESRKL
KSSLDRATGLKS*
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mRNA from alignment at P-littoralis_Contig104:393977..400008+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig104.78.4 ID=mRNA_P-littoralis_Contig104.78.4|Name=mRNA_P-littoralis_Contig104.78.4|organism=Pylaiella littoralis U1_48|type=mRNA|length=6032bp|location=Sequence derived from alignment at P-littoralis_Contig104:393977..400008+ (Pylaiella littoralis U1_48)
GAACGACCCTTCCCAGATTCGAAGGCTGTTGAAAAGCGCGTGTCTACCTT
CAAACAGAACAAATGTATCATTTGCAGGAGGCAAAGTGTGTCTCCGCCTG
CACGTGTCATACAGGCAACGCGCACGAGCGCCCCTCCGTATATAAAACGC
CTCAGTTTTACCCGCAATGATCCCGATGATATCGGCACGTCGCTCGCCGT
CACCCTTGGCGTTCTTGTTGTTTGGTTTGGTCACAGGTGTTGTGATACTC
CCGTAGAGCTGAGCTGTACTGTTCTAGCTGCCACGGTCAACGGGTTGGAC
GTCTTCAGGGCAACACAATCGCAGACAGACAGGCAGGCGGACGGGAACGG
ACAAGCAGACGGGCGGCAGACTCAGCAAGCAGGAAAGCAAGAAAACGAAA
AAAACAGTTCGAGGTTGCGTCCGATGACGCTGCTCTCCAAGGGTGCTGCT
CAGCGAGGGATCCGCCGTGGCGGCGGCGGCGGCAGCAGTTCGGCGTCGTC
GGCGGCTGGTGCCGCAAGAAAAACCACCCCCCGCAGGCAGCACACCAAGC
AGGTGCGAAAGGACTGCGTGCGGGCGACGTTGCGGTCCTCCTCCGTGGTT
GTTTTTTGTTGTTGCACTGCTGTCATCTTGCAAGATCGTCTCGTTTTACT
TCATTTCCTTTATTTCTTTATTCCTCGCTTTTATTTGACAGACAGAGCGG
CGTACCTCACACACCTCTGAACGCTGTGCTGACTCCTCCGAGTCATTTGC
CCCCCCCCCCTTGAAACGCCGTGCCTATCCTGTCAAATATCATCTCCGTG
ATAAATAATCGCAGAAGGTTGCCAGCGCTCGGTCTTCCCCGCGTCTCCAT
CTCACCCAGAAACGAACGCCGGATGGACGCGGCAGAGGGGGCGGGAGGCG
GTCCGCCTCCGCCGCCCGCCACCAGGCAAGCGCGATCAATCGTCCACAAA
GTTATGCTGCAGTCCCTGTCGGTGATGGTGGACGAACACCTGTTTCAGCG
CGGTGTACACACGCACTACCCGCATATGCACTTACTTGCCTTGGCCGCCT
GCACACACGAAACAAGCCTTGGTGTTTCCTTGCTACACATACGTATGCGG
TGCGTTTGATCTGAACCGGCCATGCTTCTCTGCTGTTTTTGACATGATAC
AACGAAGCGGCGGCGGaAAAATTATTACTCCAAGTTGTTTTTTATTTTTT
CCATTTTTATAGTCAGCATAAACGGGACGGCTGCGCGGAAGAGCACGATA
CATATTTTTTCCTTTCAACCGAAGAAGCCCACACCGCCCGCATCATCATC
ACCACCACCACCACCTCCTCCACCACCACCAAAGTATTGTTGTGCCTTCT
TGGTGGTCCTCTTGAGACTGGTCGGTCCCATGGATTTGCGCGCACGAATC
CGTTTGTGTGCTGGTGGCGCCTCCAACTCGCTCAGACAACGCACTGCGAA
GAATAAACATACCTATTCTATGATAAAAGATCACAGACCATTCAAACAGT
GTATTTTCCGATCGAAAGCGCTCATGCGTTATTATCATGCGAACCTTTCA
TGTCTTCGTAGTAACATGCAGAGAGGGCGAAAGCGTTCGCGTATTTTCTC
ACACAACTCCGCTGCCCATACACCAGCAGGGGGCGCAATCGAAGAGAGGA
GGCGCCGCCGCGACAGGCATATGCCACACCAACGCCGGCTCCCGTGGCGG
CAGCGACAGCGGCAGCGGCAGCGGCAGCGGCAGCGGCAGCAGCAGTGGTC
GTACCGCAGCCAAAACCAAGAAGGCCGCGCAGATGGACGGCGTTGCGAAG
ATCATGAAAGGCCTGAAGGGCGATCTAGCGACGGCTGTGCAGAGGGCCAT
GGAAAAGGTGGAGGCAGAGTGCGGCGCTTTCGGTGAGCTTGGGGGTGGGC
GAAATTTTACCGTAGGGTCGCCTAAGAAGTTACTCACGGGAACCCCCTGA
ACGGTTTGTTTTTGTTCAGCGTTCTTCTCAGCAGACGGGGTTTGGGTGCC
GGAAAAGGACAAAAAGGCGTTGACGTTGAAATCGTGGAACCACCTCGTCG
AGAGCTTTTCGAAAACGCAGATAGACATAATATAATCGGTTCAAGGGGCC
CCGTGGTATCTCATGCGATCTACGGCACCTACCACTTGGGAGTGGTATGA
TGCGGTTTTAGCTTTTGCTGGGCGCCATCGTTGTTGTTGTTGTTGTTGTT
GTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGT
TGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTG
TTGCTGTTTGTTGTCGATGTTGTTGTTGTTGTTGTTGCTGTTGGTGTTGT
GTGTTAGGTGCCGTGTGTTTGTTTATTTCACGTGCCTGCTGATCGTTCGC
CTCGTCCTGTAGCGCCCAGCCACCAACCACAGCACGCCGTCCAGCCTATG
GGAACGCCCGACAAGCAGCGTTCAAGCGGGCCGCCCGATGTAATTGATCG
TGGCGTTCTTTTGAGCTTCGTTTCAAGCGCCGGCGCTAGACATGCAGTTC
TGCTGTTGTATTGGCAAAAGCCCATTCATCTGTCGTGAACATTTCAGAGC
ACACAGTGGTCGTTGTTCGCAACCTTGCCTTTCATACGTAGCGCAATGAT
ATGAGGCGGTGCGGCTACATGCGATGGGTTGGACACAGACGCTGGACTGC
TCAGCTGCTCCGTTTTTGAAACTACTCTTGAGGTTCGTAGGAAAAATACT
AGAGCGCAGAAGGAAGTGGGAAATTTTGAAATGTTTCCGTTCAAGAATGG
ATTGGTTTGCCGATGTCCTCGTCACAGCAGTAAAAACCATACGCCGATGC
ACCACTCGTCTCCACGACCAACGATAAACATGCATCAGAGGTGTTCACAC
GCAGCAACAAAAACGTGCAGCATGCCCCAGACCAGGGACACTGGTTCCAA
CATATTTTCTTCTTTTTTTCTAAATTTGTTTCGTGAAGAGAGAGAGAGAC
CCATCCCTGACAGCCGTTTGTTGGAGTATACCCTTGATGAAGGTCACCTA
TCTCATCGACCATATGGGTCGTCAACGTGGGATCGTATTCGCGTGCAGTT
AGTTTTCAACGGGCACATGTACTTCGTAAGTACTGTACACACAAAATTCG
CCCCGATCATACCGACGGGGAAACAGGGGTGGTCGAGCCCTATTCGCAAG
TACACATCCTCGTTTAGAGAGAGGCGAACACATTGATGTGTTGTGTCATA
GGAAAAGCAGAAAGTAGTTCGTATTAATTACGACAAGCGGCGTGCAGAAG
GAAGGCCGAGAAAATACTTCGTTTAAAAAAACTACTCTGTTTTGACCTTC
CTTCCTCCTCCCGTGCGACCGACCGCGGCTGGAACGCCCAACGTACACCA
AAACGTTTCGACAGGCGTCAAGAATGGCAAAAAGCCGGGGCGGCAGCAAA
CACACAGACAGACAAACAGACAGGCAGACAGACATACTTCGTAGGTTTCG
CGGTTCTGGCCTCACTCAAGGCAACATGAACTGGCATTTTGTACACCGTT
ATCTGACCGACCAGCCTCTCACTTTTCACGAGCTCAACCCCCATGTGGCG
CCGCGTGACGCGGGCGTGATCGTGGCGGCAGTGTCATCGGCGCTGGAAAG
CTGCCCGGCCGGCGTTTCCGGGATCGAGGAAGAACACGCAACGGTGGAGG
CGGCCCTGCGCAAGATTGAGGCCAGACAGGCGTCCGTCACTTCGCGGTGC
TCGGGGATGCTTACCGCTGTCGAGTAAGCATGGCCTGCTCTCTCGAGTCT
TCGTGAACCTCCTCTGTCTTTGGTTGGATGCACTCTGATGCCTCTTCGGC
TGCTGGAAATTCTAGAGCTGTCAAATGTCTGGATGATGCACCCGTGAGTG
AGCCTGGGCAGCTCGCAGCTCTCAGAGCAAGCCCACCGATCGATGACACG
TCCGCGCGAACCCTTCTTGCGTGTCGCGTTTTGTTTTTAAATGCGGCGGA
TACATACGTCTACTATGTGCATGGCGTCACATCTTGTAGGGGAAAGCGGG
TAGCCCGGCTCCACCGGTCTCTTGACTTTCCGGTGCTGTGCAGGGTTTGA
CTGGGGTCGAATGAGTGCCGCAAACAGAGATTCAGATGTTTGTGAGCGCC
GCTGCCGTAGAGAGATTTCGTGATTTTCATCAGAGTCTCGTGTTCGTAGT
ATCTGATGGTGATACCCCATGAAATATTCATTTGGTATAATAGTATAAGT
AGTATCCATTCACCCCGGCTGGTGCGCCCAACTTCTGTTACGTGTACCGA
AAGGGGTTTGCTGGCGCTCCGAATAAATGGGATGGCAACACACACACACA
CAAACACGCGTTCGTGTAGATTCGCGATCCTCTCTGTGTCTCCGCCCCCC
CCCCCCATCTTAAATCTGAGGCCTCGGTCAGTGACCCACTCACACGTCTC
AGTGAAAATTGTTGTACGCTTTATCCATCGCGCTCGACAACCTCCTCCGT
GTGTATTTCAGTATCTACCGTTGCTTTATTCGTGGGTTGACCCTGAAAGC
CCTCAGTCGCTCACGCGCCACAGCACTACAAAGCTCTGCACGGTGAATCA
ATCGCGTTCAAGCTCCATCGTTCTTCGACCGCTGTTGCACACTTTGTCTG
CAGCTGCATGAGCTAAATCTGCCAGCACTCCAAAAAGCCCGAGTTCAGGT
ACTGTAGCTCCAACCATCTCGCTTGCGTCTTCACGCTGCGTGGAGGGGTT
AGGATTTGTGTCCACCATGATGATGTACTTACTTCCTTCGCGTGGATTTG
CCGCTGCTTCCAAACGTAGGAACAATCGAATCAGCCTGGCGGCAATGGTG
GACCGCTGCAGGGTGACCCTGGACAACCTGCAGCAGGCGGAGAGCCGGAA
GCTCAAGAGCAGCGTAAGCACGTAATCAGTAGACACTTCTTCGGCCAACT
GTATGGCTCGAACTCAGGGTAACTCGGACAATTTCGGATGGTTGCTTATT
CGGCCAGGTTTCGGTTCGAGCTCAGGGCTACTACTACAGACAATTTCGTA
TGATAGATCAATCGACCAAGTTAAGGTTCGAGCTAAGGATGTCGGATGCT
CGATCAGTCGACCAGTATTAACGGATGGTTGAAAAATAACTCAACCAAGA
TTGGGTTCGATCTCAGACTAGTGCTCATGGCCAAACGTATTTCCCTTTTT
AAAAATTGTTGTTGGCCCTGGGCTCGAACTGCCCTTACCTTGGTCCGAAA
ACGTCAAATTCCTCGACAGGATCGATCGATTCGCCTTTAGTCCCGACCCT
CTTcAAAGGAGCCTGAATGGGTACGTTTgTGTGTGTGTTGTCGGCGCATC
TGTTCTGGATTCCAGTCTACACCTTTCGCTATTTAATATTCCTGAGTATA
CGTCAAGGCACATCAGCCGGGGTCATACAGGAGGAAGGTCAACCGGATTT
CGTTTTTTCGAAACCATTCAATCTAGCGCAAAATTGTGGGTTCGACCGCG
CCTTCGGATTTCCATGCTCGATATTTGCCGTGCTCACAGCTAGACCGAGC
CACCGGCTTGAAGAGCTAGCTGATTGGACACGGCCGCAGCAGGCTGGCTT
ACGTGAAGATGGGCTTGGAATAACAACGCGGCCAGGGTTTATTTTCTGTG
CACTGCAGAGCGGTGCGGTGCGTTGCGGTGCGTCACGAAGGCTGGCGGTA
GAGCTAGTATTCGTCCGTTCGATATCGACACTCGCACGCCGCATGGAAGC
ATCGTAGCATGTGACTTGCAAGCGCCGGGAGGCGCGTTGGTGAGGCGGGT
CTCGATCGTTCGGCCGGAAAGAAAATGGAGAAGGCTGTGCTCTGTGCCTG
CGCGCAGCTTGGACCAGGTGTGCAGTCATGCCGTATTTTTTTTTCATTCG
TTGACTTCTCATTCTTGGACTCTTCTTTCTTATGCGTGAGTGTGCGTGGG
TACTGATGGCCCAACGTTGCTCGAGGCAACGCAAAAGAAGAGTGGGCTGC
TGCACGGAGTTGGCAAAACACGCTCGAGTATT
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Coding sequence (CDS) from alignment at P-littoralis_Contig104:393977..400008+

>mRNA_P-littoralis_Contig104.78.4 ID=mRNA_P-littoralis_Contig104.78.4|Name=mRNA_P-littoralis_Contig104.78.4|organism=Pylaiella littoralis U1_48|type=CDS|length=1089bp|location=Sequence derived from alignment at P-littoralis_Contig104:393977..400008+ (Pylaiella littoralis U1_48)
GAACGACCCTTCCCAGATTCGAAGGCTGTTGAAAAGCGCGTGTCTACCTT
CAAACAGAACAAATGTATCATTTGCAGGAGGCAAAGTGTGTCTCCGCCTG
CACGTGTCATACAGGCAACGCGCACGAGCGCCCCTCCGTATATAAAACGC
CTCAGTTTTACCCGCAATGATCCCGATGATATCGGCACGTCGCTCGCCGT
CACCCTTGGCGTTCTTGTTGTTTGGTTTGGTCACAGCTGCCACGGTCAAC
GGGTTGGACGTCTTCAGGGCAACACAATCGCAGACAGACAGGCAGGCGGA
CGGGAACGGACAAGCAGACGGGCGGCAGACTCAGCAAGCAGGAAAGCAAG
AAAACGAAAAAAACAGTTCGAGGTTGCGTCCGATGACGCTGCTCTCCAAG
GGTGCTGCTCAGCGAGGGATCCGCCGTGGCGGCGGCGGCGGCAGCAGTTC
GGCGTCGTCGGCGGCTGGTGCCGCAAGAAAAACCACCCCCCGCAGGCAGC
ACACCAAGCAGAAGGTTGCCAGCGCTCGGTCTTCCCCGCGTCTCCATCTC
ACCCAGAAACGAACGCCGGATGGACGCGGCAGAGGGGGCGGGAGGCGGTC
CGCCTCCGCCGCCCGCCACCAGGGGGCGCAATCGAAGAGAGGAGGCGCCG
CCGCGACAGGCATATGCCACACCAACGCCGGCTCCCGTGGCGGCAGCGAC
AGCGGCAGCGGCAGCGGCAGCGGCAGCGGCAGCAGCAGTGGTCGTACCGC
AGCCAAAACCAAGAAGGCCGCGCAGATGGACGGCGTTGCGAAGATCATGA
AAGGCCTGAAGGGCGATCTAGCGACGGCTGTGCAGAGGGCCATGGAAAAG
GTGGAGGCAGCGGGATCGAGGAAGAACACGCAACGGTGGAGGCGGCCCTG
CGCAAGATTGAGGCCAGACAGGCGTCCGTCACTTCGCGGTGCTCGGGGAT
GCTTACCGCTGTCGAGAACAATCGAATCAGCCTGGCGGCAATGGTGGACC
GCTGCAGGGTGACCCTGGACAACCTGCAGCAGGCGGAGAGCCGGAAGCTC
AAGAGCAGCCTAGACCGAGCCACCGGCTTGAAGAGCTAG
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