mRNA_P-littoralis_Contig104.77.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig104.77.1
Unique NamemRNA_P-littoralis_Contig104.77.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig104.77.1 vs. uniprot
Match: A0A6H5K6B4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6B4_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 2.760e-32
Identity = 59/70 (84.29%), Postives = 63/70 (90.00%), Query Frame = 1
Query:   19 VAVLVTDSWRDSHVDLLKEPKRRRCGFRDVDPTSEFMISSRGGRPKKGAPVQNKNALDGGNYFRNLYSVL 228
            +AVLV D+WRDS VDLLK  +RRR GFRDVDPT  FMISSRGGRPKKGAPVQNKNALDGGNYFRNLYS+L
Sbjct:  195 LAVLVADAWRDSQVDLLKARERRRFGFRDVDPTGAFMISSRGGRPKKGAPVQNKNALDGGNYFRNLYSIL 264          
BLAST of mRNA_P-littoralis_Contig104.77.1 vs. uniprot
Match: A0A6H5LNU8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LNU8_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 9.080e-32
Identity = 59/70 (84.29%), Postives = 63/70 (90.00%), Query Frame = 1
Query:   19 VAVLVTDSWRDSHVDLLKEPKRRRCGFRDVDPTSEFMISSRGGRPKKGAPVQNKNALDGGNYFRNLYSVL 228
            +AVLV D+WRDS VDLLK  +RRR GFRDVDPT  FMISSRGGRPKKGAPVQNKNALDGGNYFRNLYS+L
Sbjct:  186 LAVLVADAWRDSQVDLLKARERRRFGFRDVDPTGAFMISSRGGRPKKGAPVQNKNALDGGNYFRNLYSIL 255          
BLAST of mRNA_P-littoralis_Contig104.77.1 vs. uniprot
Match: A0A6H5K2W2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2W2_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 8.930e-31
Identity = 57/70 (81.43%), Postives = 61/70 (87.14%), Query Frame = 1
Query:   19 VAVLVTDSWRDSHVDLLKEPKRRRCGFRDVDPTSEFMISSRGGRPKKGAPVQNKNALDGGNYFRNLYSVL 228
            +AVLV D+WRDS VDLLK  +RRR GFRDVDPT  FMIS RGGRPKKGAPVQNKN LDGGNYFRNLYS+L
Sbjct:  171 LAVLVADAWRDSQVDLLKARERRRFGFRDVDPTGAFMISFRGGRPKKGAPVQNKNDLDGGNYFRNLYSIL 240          
BLAST of mRNA_P-littoralis_Contig104.77.1 vs. uniprot
Match: A0A6H5L2B8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2B8_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 1.500e-30
Identity = 56/70 (80.00%), Postives = 62/70 (88.57%), Query Frame = 1
Query:   19 VAVLVTDSWRDSHVDLLKEPKRRRCGFRDVDPTSEFMISSRGGRPKKGAPVQNKNALDGGNYFRNLYSVL 228
            +AVLV D+WRDS VDL+K  +RRR GFRD DPT  FMISSRGGRPK+GAPVQNKNALDGGNYFRNLYS+L
Sbjct:  274 LAVLVADAWRDSQVDLIKARERRRFGFRDADPTGAFMISSRGGRPKRGAPVQNKNALDGGNYFRNLYSIL 343          
BLAST of mRNA_P-littoralis_Contig104.77.1 vs. uniprot
Match: A0A6H5JCI8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCI8_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 1.320e-29
Identity = 57/70 (81.43%), Postives = 61/70 (87.14%), Query Frame = 1
Query:   19 VAVLVTDSWRDSHVDLLKEPKRRRCGFRDVDPTSEFMISSRGGRPKKGAPVQNKNALDGGNYFRNLYSVL 228
            +AVLV D+WRDS VDLLK  +RRR GFRDVD T  FMISSRGGRPKKGA VQNKNALDGGNYFRNLYS+L
Sbjct:   53 LAVLVADAWRDSQVDLLKARERRRFGFRDVDSTGAFMISSRGGRPKKGAAVQNKNALDGGNYFRNLYSIL 122          
BLAST of mRNA_P-littoralis_Contig104.77.1 vs. uniprot
Match: D7FQN9_ECTSI (Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2879 RepID=D7FQN9_ECTSI)

HSP 1 Score: 120 bits (301), Expect = 2.440e-29
Identity = 58/71 (81.69%), Postives = 62/71 (87.32%), Query Frame = 1
Query:   19 VAVLVTDSWRDSHVDLLKEPK-RRRCGFRDVDPTSEFMISSRGGRPKKGAPVQNKNALDGGNYFRNLYSVL 228
            +AVLV + WRDS V LLK+PK RRR GFRDVDPT  FMISSRGGRPKKGAPV NKNALDGGNYFRNLYS+L
Sbjct:  208 LAVLVAEVWRDSQVYLLKKPKERRRFGFRDVDPTGAFMISSRGGRPKKGAPVHNKNALDGGNYFRNLYSIL 278          
BLAST of mRNA_P-littoralis_Contig104.77.1 vs. uniprot
Match: A0A6H5KMS8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMS8_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 8.240e-29
Identity = 58/71 (81.69%), Postives = 61/71 (85.92%), Query Frame = 1
Query:   19 VAVLVTDSWRDSHVDLLKEPK-RRRCGFRDVDPTSEFMISSRGGRPKKGAPVQNKNALDGGNYFRNLYSVL 228
            +AVLV D WRDS V LLK+ K RRR GFRDVDPT  FMISSRGGRPKKGAPV NKNALDGGNYFRNLYS+L
Sbjct:  187 LAVLVADVWRDSQVYLLKKTKERRRFGFRDVDPTGAFMISSRGGRPKKGAPVHNKNALDGGNYFRNLYSIL 257          
BLAST of mRNA_P-littoralis_Contig104.77.1 vs. uniprot
Match: A0A6H5JCS9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCS9_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 1.480e-25
Identity = 52/70 (74.29%), Postives = 57/70 (81.43%), Query Frame = 1
Query:   19 VAVLVTDSWRDSHVDLLKEPKRRRCGFRDVDPTSEFMISSRGGRPKKGAPVQNKNALDGGNYFRNLYSVL 228
            +AVLV D+WRDS VDLL   +R+R GFRDVDPT  F  S  GGRPKKGAP QNKNALDGGNYFRNLYS+L
Sbjct:  208 LAVLVADTWRDSQVDLLAR-ERKRFGFRDVDPTGAFTSSCGGGRPKKGAPAQNKNALDGGNYFRNLYSIL 276          
BLAST of mRNA_P-littoralis_Contig104.77.1 vs. uniprot
Match: A0A6H5KE79_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE79_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 1.150e-21
Identity = 59/122 (48.36%), Postives = 63/122 (51.64%), Query Frame = 1
Query:   19 VAVLVTDSWRDSHVDLLKEPK-RRRCGFRDVDPTSEFMISSRGGRPKKGAPVQNKN---------------------------------------------------ALDGGNYFRNLYSVL 228
            +AVLV D WRDS V LLK+PK RRR GFRDVDPT  FMISSRGGRPKKGAPV+NKN                                                   ALDGGNYFRNLYS+L
Sbjct:  198 LAVLVADVWRDSQVYLLKKPKERRRFGFRDVDPTGAFMISSRGGRPKKGAPVKNKNDRSTLLTVGTTSATSIRFYWSATXARERRRFGFRDVDPAGRACEKQERPFNALDGGNYFRNLYSIL 319          
BLAST of mRNA_P-littoralis_Contig104.77.1 vs. uniprot
Match: A0A6H5JDB7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDB7_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 1.720e-19
Identity = 47/70 (67.14%), Postives = 51/70 (72.86%), Query Frame = 1
Query:   19 VAVLVTDSWRDSHVDLLKEPKRRRCGFRDVDPTSEFMISSRGGRPKKGAPVQNKNALDGGNYFRNLYSVL 228
            + VLV D+WRDS VDLL   +RRR GFRDVDPT  FMISS GGRP  GAPV NKN      YFRNLYS+L
Sbjct:  201 LVVLVADAWRDSQVDLLTR-ERRRFGFRDVDPTGAFMISSGGGRPTNGAPVPNKN------YFRNLYSIL 263          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig104.77.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
A0A6H5K6B4_9PHAE2.760e-3284.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LNU8_9PHAE9.080e-3284.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K2W2_9PHAE8.930e-3181.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L2B8_9PHAE1.500e-3080.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCI8_9PHAE1.320e-2981.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FQN9_ECTSI2.440e-2981.69Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2... [more]
A0A6H5KMS8_9PHAE8.240e-2981.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCS9_9PHAE1.480e-2574.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KE79_9PHAE1.150e-2148.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JDB7_9PHAE1.720e-1967.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig104contigP-littoralis_Contig104:392109..392450 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FQN9
Model size343
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue4e-30
EggNOG OGs2E3IK@1|root,2SAKM@2759|Eukaryota
Cds size342
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789377.0740864-CDS-P-littoralis_Contig104:392108..3924501680789377.0740864-CDS-P-littoralis_Contig104:392108..392450Pylaiella littoralis U1_48CDSP-littoralis_Contig104 392109..392450 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig104.77.1prot_P-littoralis_Contig104.77.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig104 392109..392450 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig104.77.1

>prot_P-littoralis_Contig104.77.1 ID=prot_P-littoralis_Contig104.77.1|Name=mRNA_P-littoralis_Contig104.77.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=114bp
NNFPEPVAVLVTDSWRDSHVDLLKEPKRRRCGFRDVDPTSEFMISSRGGR
PKKGAPVQNKNALDGGNYFRNLYSVLPLSVRGYDCSPARLRANLSPNSGT
LVGRYRHASALVCA
back to top

mRNA from alignment at P-littoralis_Contig104:392109..392450+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig104.77.1 ID=mRNA_P-littoralis_Contig104.77.1|Name=mRNA_P-littoralis_Contig104.77.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=342bp|location=Sequence derived from alignment at P-littoralis_Contig104:392109..392450+ (Pylaiella littoralis U1_48)
AACAACTTCCCGGAGCCTGTCGCTGTCCTCGTCACCGACTCTTGGCGCGA CAGTCACGTCGACCTGCTAAAAGAACCCAAGAGGAGAAGGTGTGGATTCC GTGATGTAGACCCCACAAGCGAGTTTATGATCTCATCTCGTGGTGGTCGA CCAAAAAAGGGCGCGCCTGTACAAAACAAGAACGCTCTTGACGGTGGGAA CTACTTCCGCAACCTGTATTCGGTTCTCCCTCTCTCTGTGAGGGGATACG ATTGCTCACCTGCTCGTCTGCGAGCCAACCTTTCGCCTAATTCAGGTACC CTTGTCGGGCGGTATCGCCACGCCTCTGCTCTTGTATGTGCT
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig104:392109..392450+

>mRNA_P-littoralis_Contig104.77.1 ID=mRNA_P-littoralis_Contig104.77.1|Name=mRNA_P-littoralis_Contig104.77.1|organism=Pylaiella littoralis U1_48|type=CDS|length=342bp|location=Sequence derived from alignment at P-littoralis_Contig104:392109..392450+ (Pylaiella littoralis U1_48)
AACAACTTCCCGGAGCCTGTCGCTGTCCTCGTCACCGACTCTTGGCGCGA
CAGTCACGTCGACCTGCTAAAAGAACCCAAGAGGAGAAGGTGTGGATTCC
GTGATGTAGACCCCACAAGCGAGTTTATGATCTCATCTCGTGGTGGTCGA
CCAAAAAAGGGCGCGCCTGTACAAAACAAGAACGCTCTTGACGGTGGGAA
CTACTTCCGCAACCTGTATTCGGTTCTCCCTCTCTCTGTGAGGGGATACG
ATTGCTCACCTGCTCGTCTGCGAGCCAACCTTTCGCCTAATTCAGGTACC
CTTGTCGGGCGGTATCGCCACGCCTCTGCTCTTGTATGTGCT
back to top