mRNA_P-littoralis_Contig104.6.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig104.6.1
Unique NamemRNA_P-littoralis_Contig104.6.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig104.6.1 vs. uniprot
Match: A0A6H5JVT2_9PHAE (Dimer_Tnp_hAT domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVT2_9PHAE)

HSP 1 Score: 201 bits (511), Expect = 3.120e-63
Identity = 99/130 (76.15%), Postives = 109/130 (83.85%), Query Frame = 1 
Query:    7 HVSFLQLDTRDILPWWRETGRKMFPYLAPVAQQVFGNQAGAAQVERDFSACGNLLVPNRSRIDTYWVEMLMFLKVNYKHIPALKDIPMIADKDIRKCLPAKFTGARDADLNAAEAALDVVNNTAN-DIGV 393
            +++  +LDTR++LPWWR TGRKMFPYLAPVAQQV GNQAGAAQVERDFS+C NLL  NRSRIDTYWVEM+MFL VNYK IPA KDIPMIA KDIR CLP +F G  DADL AAEAA DV+ NT N DIGV
Sbjct:   94 YMTAEELDTREVLPWWRNTGRKMFPYLAPVAQQVLGNQAGAAQVERDFSSCANLLTRNRSRIDTYWVEMVMFLHVNYKRIPAFKDIPMIAAKDIRTCLPPRFNGG-DADLAAAEAAFDVIENTNNSDIGV 222
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BLAST of mRNA_P-littoralis_Contig104.6.1 vs. uniprot
Match: A0A6H5KSA7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSA7_9PHAE)

HSP 1 Score: 192 bits (488), Expect = 8.890e-61
Identity = 90/123 (73.17%), Postives = 102/123 (82.93%), Query Frame = 1 
Query:    7 HVSFLQLDTRDILPWWRETGRKMFPYLAPVAQQVFGNQAGAAQVERDFSACGNLLVPNRSRIDTYWVEMLMFLKVNYKHIPALKDIPMIADKDIRKCLPAKFTGARDADLNAAEAALDVVNNT 375
            +++  +LDTR+ILPWWR+TGRK FPYLAPVAQQVFGNQAGAAQVERDFS C NLL  NRSR+DTYWVEM+MFL  N++HIP  KDIPMIA KDI  CLP +F G  DADL AAEAA DV+ NT
Sbjct:   19 YITAEELDTREILPWWRQTGRKTFPYLAPVAQQVFGNQAGAAQVERDFSGCANLLTRNRSRMDTYWVEMVMFLHANFEHIPGFKDIPMIAAKDIHTCLPPRFNGG-DADLAAAEAAFDVIKNT 140
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BLAST of mRNA_P-littoralis_Contig104.6.1 vs. uniprot
Match: A0A6H5KZ46_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ46_9PHAE)

HSP 1 Score: 196 bits (498), Expect = 3.900e-57
Identity = 97/130 (74.62%), Postives = 107/130 (82.31%), Query Frame = 1 
Query:    7 HVSFLQLDTRDILPWWRETGRKMFPYLAPVAQQVFGNQAGAAQVERDFSACGNLLVPNRSRIDTYWVEMLMFLKVNYKHIPALKDIPMIADKDIRKCLPAKFTGARDADLNAAEAALDVVNNTAN-DIGV 393
            +++  +LDTR++LPWWR TGRKMFP LAPVAQQV GNQAGAAQVERDFS+C NLL  NRSRIDTYWVEM+MFL VNYK IPA KDIPMIA KDIR CLP +F G  DADL AAEA  DV+ NT N DIGV
Sbjct:  492 YMTAEELDTREVLPWWRNTGRKMFPCLAPVAQQVLGNQAGAAQVERDFSSCANLLTRNRSRIDTYWVEMVMFLHVNYKRIPAFKDIPMIAAKDIRTCLPPRFNGG-DADLAAAEATFDVIENTNNSDIGV 620
[Close]
BLAST of mRNA_P-littoralis_Contig104.6.1 vs. uniprot
Match: A0A6H5JZQ5_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ5_9PHAE)

HSP 1 Score: 174 bits (440), Expect = 2.370e-51
Identity = 81/119 (68.07%), Postives = 97/119 (81.51%), Query Frame = 1 
Query:   22 QLDTRDILPWWRETGRKMFPYLAPVAQQVFGNQAGAAQVERDFSACGNLLVPNRSRIDTYWVEMLMFLKVNYKHIPALKDIPMIADKDIRKCLPAKFTGARDADLNAAEAALDVVNNTA 378
            +LD R++LPWW+ TG+ +FP+LAPVAQQVFGNQA  +QVERDFS  G LL PNRSR+DTYWVE++MFL  N+ HIP LK IPM+A K+IR CLPA+F G RDADL AAEA  DV+ NTA
Sbjct:  186 ELDCREVLPWWKRTGKNIFPHLAPVAQQVFGNQAAVSQVERDFSGVGILLAPNRSRMDTYWVEIVMFLNANFAHIPPLKQIPMVAAKNIRSCLPARFHG-RDADLMAAEAIFDVLMNTA 303
[Close]
BLAST of mRNA_P-littoralis_Contig104.6.1 vs. uniprot
Match: A0A6H5KP16_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP16_9PHAE)

HSP 1 Score: 164 bits (416), Expect = 2.300e-50
Identity = 85/108 (78.70%), Postives = 89/108 (82.41%), Query Frame = 1 
Query:   73 MFPYLAPVAQQVFGNQAGAAQVERDFSACGNLLVPNRSRIDTYWVEMLMFLKVNYKHIPALKDIPMIADKDIRKCLPAKFTGARDADLNAAEAALDVVNNTAN-DIGV 393
            MFPYLAPVAQQV GNQAGAAQVERDFS+C NLL  NRSRIDTYWVEM+MFL VNYK IPA KDIPMIA KDIR CLP +F G  DADL AAEAA DV+ N  N DIGV
Sbjct:    1 MFPYLAPVAQQVLGNQAGAAQVERDFSSCANLLTRNRSRIDTYWVEMVMFLHVNYKRIPAFKDIPMIAAKDIRTCLPPRFNGG-DADLAAAEAAFDVIENINNSDIGV 107
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BLAST of mRNA_P-littoralis_Contig104.6.1 vs. uniprot
Match: A0A6H5KBM2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBM2_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 1.940e-40
Identity = 78/107 (72.90%), Postives = 83/107 (77.57%), Query Frame = 1 
Query:   76 FPYLAPVAQQVFGNQAGAAQVERDFSACGNLLVPNRSRIDTYWVEMLMFLKVNYKHIPALKDIPMIADKDIRKCLPAKFTGARDADLNAAEAALDVVNNTAN-DIGV 393
            F  L   A +V GNQAGAAQVERDFS+C NLL  NRSRIDTYWVEM+MFL VNYK IPA KDIPMIA KDIR CLP +F G  DADL AAEAA DV+ NT N DIGV
Sbjct:  218 FQALYMTAGEVLGNQAGAAQVERDFSSCANLLTRNRSRIDTYWVEMVMFLHVNYKCIPAFKDIPMIAAKDIRTCLPPRFNGG-DADLAAAEAAFDVIENTNNSDIGV 323
[Close]
BLAST of mRNA_P-littoralis_Contig104.6.1 vs. uniprot
Match: A0A6H5JJJ9_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJJ9_9PHAE)

HSP 1 Score: 138 bits (348), Expect = 2.170e-35
Identity = 69/116 (59.48%), Postives = 80/116 (68.97%), Query Frame = 1 
Query:   25 LDTRDILPWWRETGRKMFPYLAPVAQQVFGNQAGAAQVERDFSACGNLLVPNRSRIDTYWVEMLMFLKVNYKHIPALKDIPMIADKDIRKCLPAKFTGARDADLNAAEAALDVVNN 372
            L   ++L +W  TGR  FP L  VAQQ FG+Q  AA VERDFS CG  LVPNRSR++ YWVEM+MFL  N+K IP   +IP I  KDIRKCLPAKF G  D DL +AE ALD + N
Sbjct:  727 LHPTEVLSYWATTGRHSFPALKHVAQQTFGSQPSAAPVERDFSGCGLFLVPNRSRVEEYWVEMVMFLNANFKFIPKYDNIPSIDSKDIRKCLPAKFKGT-DEDLLSAEMALDPLRN 841
[Close]
BLAST of mRNA_P-littoralis_Contig104.6.1 vs. uniprot
Match: A0A6H5K8W6_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8W6_9PHAE)

HSP 1 Score: 128 bits (321), Expect = 3.060e-32
Identity = 66/114 (57.89%), Postives = 79/114 (69.30%), Query Frame = 1 
Query:   37 DILPWWRETGRKMFPYLAPVAQQVFGNQAGAAQVERDFSACGNLLVPNRSRIDTYWVEMLMFLKVNYKHIPALKDIPMIADKDIRKCLPAKFTGARDADLNAAEAALDVVNNTA 378
            ++L +W  TG+  FP L  VAQQ FGNQA AA VERDFS CG  +VPNRSR+D YWVEM+MFLK N+     + +IP I  KDIRKCLPAKF G  +  LNA E AL  ++N A
Sbjct:  389 EVLSYWGRTGKHAFPSLKHVAQQTFGNQASAAPVERDFSGCGLFMVPNRSRVDEYWVEMVMFLKANFNSSRRI-NIPQIDPKDIRKCLPAKFEGTDEDHLNA-EMALYPLSNDA 500
[Close]
BLAST of mRNA_P-littoralis_Contig104.6.1 vs. uniprot
Match: A0A6H5KFQ8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFQ8_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 1.130e-30
Identity = 63/116 (54.31%), Postives = 81/116 (69.83%), Query Frame = 1 
Query:   25 LDTRDILPWWRETGRKMFPYLAPVAQQVFGNQAGAAQVERDFSACGNLLVPNRSRIDTYWVEMLMFLKVNYKHIPALKDIPMIADKDIRKCLPAKFTGARDADLNAAEAALDVVNN 372
            L  RD+L +W+++GR  FP L  VAQQ FG+QA AAQ+ERDFS  G L   NR+R+D YWVEM++FLK N++ IP   DIP +  K IR+CLPAKF G  +  L+A E ALD + N
Sbjct:  382 LQPRDVLNYWKQSGRHAFPALNYVAQQRFGSQAYAAQIERDFSTGGLLGASNRNRLDEYWVEMVLFLKANFQCIPGYDDIPNMDSKSIRECLPAKFKGTNEYLLDA-EMALDPLEN 496
[Close]
BLAST of mRNA_P-littoralis_Contig104.6.1 vs. uniprot
Match: A0A6H5JB08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB08_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 5.430e-30
Identity = 57/99 (57.58%), Postives = 71/99 (71.72%), Query Frame = 1 
Query:   19 LQLDTRDILPWWRETGRKMFPYLAPVAQQVFGNQAGAAQVERDFSACGNLLVPNRSRIDTYWVEMLMFLKVNYKHIPALKDIPMIADKDIRKCLPAKFT 315
            + L   D+L +W + G++MFP L  VAQQ FG+QA AAQ+ERDFS CG     NRSR + YW+EM+M LK NY+ IP  KDIP I  KDIRKCLPAK++
Sbjct:  485 IDLPPSDVLAYWNKVGKQMFPSLKYVAQQTFGSQASAAQIERDFSHCGLFSTGNRSRAEEYWLEMVMVLKGNYELIPDYKDIPSIDSKDIRKCLPAKYS 583
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig104.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JVT2_9PHAE3.120e-6376.15Dimer_Tnp_hAT domain-containing protein n=3 Tax=Ec... [more]
A0A6H5KSA7_9PHAE8.890e-6173.17Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KZ46_9PHAE3.900e-5774.62Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JZQ5_9PHAE2.370e-5168.07Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KP16_9PHAE2.300e-5078.70Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KBM2_9PHAE1.940e-4072.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJJ9_9PHAE2.170e-3559.48Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5K8W6_9PHAE3.060e-3257.89Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KFQ8_9PHAE1.130e-3054.31Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JB08_9PHAE5.430e-3057.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig104contigP-littoralis_Contig104:34138..34533 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog568076.XP_007817118.1
PFAMsDimer_Tnp_hAT
Model size396
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.29e-07
EggNOG OGsKOG1121@1|root,KOG1121@2759|Eukaryota,39UGI@33154|Opisthokonta,3P5TX@4751|Fungi,3QX04@4890|Ascomycota,21E0K@147550|Sordariomycetes
DescriptionhAT family C-terminal dimerisation region
Cds size396
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789374.5672898-CDS-P-littoralis_Contig104:34137..345331680789374.5672898-CDS-P-littoralis_Contig104:34137..34533Pylaiella littoralis U1_48CDSP-littoralis_Contig104 34138..34533 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig104.6.1prot_P-littoralis_Contig104.6.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig104 34138..34533 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig104.6.1

>prot_P-littoralis_Contig104.6.1 ID=prot_P-littoralis_Contig104.6.1|Name=mRNA_P-littoralis_Contig104.6.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=132bp
MPHVSFLQLDTRDILPWWRETGRKMFPYLAPVAQQVFGNQAGAAQVERDF
SACGNLLVPNRSRIDTYWVEMLMFLKVNYKHIPALKDIPMIADKDIRKCL
PAKFTGARDADLNAAEAALDVVNNTANDIGV*
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mRNA from alignment at P-littoralis_Contig104:34138..34533+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig104.6.1 ID=mRNA_P-littoralis_Contig104.6.1|Name=mRNA_P-littoralis_Contig104.6.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=396bp|location=Sequence derived from alignment at P-littoralis_Contig104:34138..34533+ (Pylaiella littoralis U1_48)
ATGCCTCATGTTTCTTTTTTGCAGTTGGACACTCGGGACATACTTCCTTG
GTGGCGGGAGACCGGCCGGAAGATGTTCCCCTACCTCGCACCCGTGGCGC
AGCAGGTGTTCGGGAATCAGGCCGGTGCGGCGCAGGTTGAGCGCGACTTC
AGTGCTTGCGGTAACCTACTCGTGCCCAACAGGAGCCGCATCGACACCTA
CTGGGTGGAGATGCTGATGTTCCTCAAGGTCAACTACAAGCACATCCCCG
CGTTGAAGGACATTCCCATGATCGCCGATAAGGACATCCGCAAGTGTCTG
CCGGCAAAGTTCACCGGCGCGAGGGACGCTGACCTGAACGCCGCTGAGGC
CGCCTTGGACGTGGTGAACAACACCGCGAACGACATTGGCGTGTAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig104:34138..34533+

>mRNA_P-littoralis_Contig104.6.1 ID=mRNA_P-littoralis_Contig104.6.1|Name=mRNA_P-littoralis_Contig104.6.1|organism=Pylaiella littoralis U1_48|type=CDS|length=396bp|location=Sequence derived from alignment at P-littoralis_Contig104:34138..34533+ (Pylaiella littoralis U1_48)
ATGCCTCATGTTTCTTTTTTGCAGTTGGACACTCGGGACATACTTCCTTG
GTGGCGGGAGACCGGCCGGAAGATGTTCCCCTACCTCGCACCCGTGGCGC
AGCAGGTGTTCGGGAATCAGGCCGGTGCGGCGCAGGTTGAGCGCGACTTC
AGTGCTTGCGGTAACCTACTCGTGCCCAACAGGAGCCGCATCGACACCTA
CTGGGTGGAGATGCTGATGTTCCTCAAGGTCAACTACAAGCACATCCCCG
CGTTGAAGGACATTCCCATGATCGCCGATAAGGACATCCGCAAGTGTCTG
CCGGCAAAGTTCACCGGCGCGAGGGACGCTGACCTGAACGCCGCTGAGGC
CGCCTTGGACGTGGTGAACAACACCGCGAACGACATTGGCGTGTAG
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