mRNA_P-littoralis_Contig104.117.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig104.117.1
Unique NamemRNA_P-littoralis_Contig104.117.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig104.117.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig104contigP-littoralis_Contig104:533454..537626 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size252
Hectar predicted targeting categoryother localisation
Exons2
Cds size189
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789374.2435334-UTR-P-littoralis_Contig104:533453..5334831680789374.2435334-UTR-P-littoralis_Contig104:533453..533483Pylaiella littoralis U1_48UTRP-littoralis_Contig104 533454..533483 +
1680789374.2775986-UTR-P-littoralis_Contig104:537593..5376261680789374.2775986-UTR-P-littoralis_Contig104:537593..537626Pylaiella littoralis U1_48UTRP-littoralis_Contig104 537594..537626 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789374.258985-CDS-P-littoralis_Contig104:533483..5335761680789374.258985-CDS-P-littoralis_Contig104:533483..533576Pylaiella littoralis U1_48CDSP-littoralis_Contig104 533484..533576 +
1680789374.268808-CDS-P-littoralis_Contig104:537497..5375931680789374.268808-CDS-P-littoralis_Contig104:537497..537593Pylaiella littoralis U1_48CDSP-littoralis_Contig104 537498..537593 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig104.117.1prot_P-littoralis_Contig104.117.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig104 533484..537593 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig104.117.1

>prot_P-littoralis_Contig104.117.1 ID=prot_P-littoralis_Contig104.117.1|Name=mRNA_P-littoralis_Contig104.117.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=63bp
MSRCLDAWMLVSAADDSDREMSEGTERTRQQVQRSSPVSPIGRVENIRGQ
AWRTQPRSNKPI*
back to top

mRNA from alignment at P-littoralis_Contig104:533454..537626+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig104.117.1 ID=mRNA_P-littoralis_Contig104.117.1|Name=mRNA_P-littoralis_Contig104.117.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4173bp|location=Sequence derived from alignment at P-littoralis_Contig104:533454..537626+ (Pylaiella littoralis U1_48)
GTACGATGTGAGCGGCGAGATTCCCTGCTGATGTCCAGATGCTTGGATGC
TTGGATGCTTGTCTCCGCTGCTGATGATTCTGATCGGGAGATGTCCGAGG
GGACGGAGAGGACGAGACAGCAGGCACGGGCGCTTTGGTGGGGAGGTGGC
GAGGGGCAGTACCAGGAGGGGGGGAGGCATACCAGATGAACGCCACAGCT
GTCATTTTTGATGCTCACCAGCAGGTGCAGTTCAAGAGCTATTCCTTGGA
CATGAAATACGGTAGAAGGTGACTGTCTTTGTTCCTCCTGTAGTCTTGTT
TGAACTCGGGAGTGAACCGCTCGATGATGACTCTGACATTACATCACTAC
TGCAGCTGCTGCTTTCGCCGTATGTATCAGACACACACGCCCCCATGTCA
CTTGTGTTGCTCTCTTTTGTCCAGAACAATGGATAGCAGTGTTGTTATGC
GTTGAACACTACTGAGAGTAGAATGCAAAGCGTGCAAGACCCAAGCAGTC
CAAGCCCCTGCACCCCTTTTCGAAAGTTGCGCAAGCAAACACCGTACGCT
TTCAGTAAATAGCTAGAGCAGTACAGCATACTTCGAAAGTATACAGCGGT
ACTGCTGCTGTGTACCTGTACCAGGGATAAAATCGGTACCCTCGACGTTT
CCAGCTACATTGGGAGCAGCACAGCCGTTGACACAACAATCCCATTTGAA
GAGAGATTAGCCAGCACCCGCACAGCGTGTGAGACACGGCACTTCGATTG
CGACTGCTGTTGCCACCTCTGGGTGGTTACCTTTACTGAGATGTATGTAC
GAACAGGGATGAAAAGTTGCAACGGATTGGCCGTCAGATTCTGACTTCGA
ATTACAGAGTATGTCAGCTAGGGACAAGAGCAGGCAGATTATTTTCCGCG
AGTCATACGCTACATATCCCACCGCAGCGAGTAGCCGATGTGTACAGCAC
CATCTGCGGCACAGATTGTAAACTTGTAGGTATCTCCTACATGCACACAT
AAGATCGGCCATCGCACATCAAATTGCCACAAAAATACTCCATCTACTAC
TGCAGTAAGTTGACTGTGTACAAGTTCTAATTCAACTTTGTACTTCTGAG
TAGATAAAGAAGGTGCTCAGCATGTACCGAAAAAGAAGCCGGCCGAGTTT
CACGTGTTGATTGCGGTGTTCCAACGATACTTGCCTTGGCTCCCCATCCC
CCCGCCGCCGCGGTTGGCGCAGGTGAAGCCTCGCCGGTGGAGAAGCAAAG
CAAGACGGATCTCACGCCACCAAGACCACAACGAATACTTGGCTCCAACG
CGGCTTGCAGTAACCCACGGTGGGTGGTGCGTTAGGGAACCCTATTTAAT
TTGATCCAATTTTGCTGAATTTTGGAATCCTGCAAAGAGCACTCTAAACG
TCTCGAAGCAGGGCCATCAGACCAGTAGAAAAGGGTTGGGGGCCGAAACA
ACGGCTGGAAGGTGGTGGATGGGGCGTTATCGCGACACAAATCTTGTGAT
TCAGAACTCCGTGATAATTTCGCCTAATCGAATATCCAAGATGATAACCT
CCCCAGTCTAAATTCAAGACAAACTAGTGAACACGAGAGGCGCTCGAATG
AGACCTGTGGTGTGAATTAAGCCGGGGTTTCGAATGGTATCAGTAGGGGA
AATCACGTAGAAGCGACGTATGTGTTGGCTAACTCAGATTTTCTACTGTG
GCTGTGTTATCGGTGGTTGGAAATATGTTGTACAGCAGTCGGGATTCTGT
CCAATCTCGGCCCGAGATCAGACACCTTGCATGATCTTCCACTGCTTTAC
TCACCCCCATGGGCCAGGATTTTGGGTCTACAGCAGCAGTAGCTTATACC
ACTTGCTGCCTAGGACAACACTCAGTTCAGGAGATCGGGGCCCATGGCGG
CGAGTACAGCAGTGAAATATCATGTAAGATGTTTGGTTTCGGGCTGTGAT
GCGGACGGTTTTTGGGGTGCTGCACCACATACCTTCGACCACCGATATCT
AAGCCCCGTCAAAAGCTCTGAGGTTGCCAACACGCACGTCGCCTCTACAT
TATGTATTCTACTGATATCCATATAAACCCCGGCTTAATTCACGCGGGAA
GGTCGATTTCTATCTTTGTACTAGATGAAGACTGGATGTGCTTTTGAAAT
TTAGTGGGGTTGAATAGGGTCCTTTAAGTGGCATGACTGGACGTTTATTG
CATACTTCGTATGATATGACAGACAAGCTGCGCACAAGAAAGTTTGTTTC
TAATCGATTTGTAACGGCCGTATTTTGAACGCTTCCAGCACACAGCACCC
GAAAAATTTGAGCATATGTGTGTATCGGTAGCCTTATCTGCGCATGCCAG
GTGCATGATTTTTCTGCACCTGAAGGAACGCCTACAGAACTTTACCCAGA
AACCCTACTACCGGTACACAACCAACGTCCACATTTGTCAGATATTTTTG
GAAACAACATAAACCAACGCAGTACAAGTACTATAGTTATGTGCGTTCCC
CGTGCGTGCGAGCAGCAGAGAAAGAGAAAGAGAGAGCGAAAGCAAAGATT
CGCGTGATTGCATTATTTGTTGTGTGTGCGCTGCACTACTGCGGCCGTGC
TGTGAGTGTGCTTGTGTGTGCACTACGGGTGCCGCTGTACTGCGCGCTAA
GTATGTGTGTTGCCTCTGCGGTACTACTTCTCTGCGCCTACCTTGTTTGC
CGCTGTATATTCTCCTTTTCGTGGTCATGGCGCTGTAGGGACGTTTGAGA
TTCACTTATCCGAAAGGCCTTCTTGTAGCGATGTTCTCACCGTCTATACT
GGTACAAGGGCGTCTCGGTATAGCATATAACGAGCGCACCTATCATAGTG
TTGTGTACATATCATACCACTCTGCAACTCTGTACTGCTGCGTGTTGGAC
TTTAAACAGCCCGCCCAAGCGACGTGGAACAACCAGCAACCCTGGTCGCT
AGGGTGCCAAATTTATGTGCCAAATCTTTAAACAGAGTCCATGTTGAAGA
AAAAAACAACCAAAATTTGAAAGGAGGGACTTTATGATACCCCGAACAGT
CGTCAGCTGGCAAAATTTGCTCTGCGCAAGCACGTTGTTATATTTCATGT
TTCGCGGACGACTGCACACACATGAGCAGTCAATAGTAGAGCCATCGACA
CATTGTTTCATTTCCAGATTGTGAAACTCTTAGGCTGACACTCTTCACCT
CCTCACGGGAGATCGAGAAGCGGGGGTGTGAACTGCTGGAAAGTTTAAAT
GTGCGTTTTAGTCAAAAATAGAACAGACCGACCGTTTTCCCGTTGAGAAT
GTCGCATCCACAGCAGTCCAACAAGAAATCGATAGAATGTACTGACGGTG
TGAGAGACGTCGCACCCCCAAACAGCAGAATCAGGCAGGCAGAAACATCG
TCAGACAGCCCGTGTCCAAAGTGTAGTCCCCTTTGTGAAAATGTGCATGT
GTATTGGATAACATCCTCGGAACGAACGACCCTGTGATCACTTGCAAGAG
TGCGGCTCAGGATCCCTTCCGCATTTCCCAGATTTATATTCTTGACGTTT
CCAATAAATTTTTCAGCTTACGAGAGGTACCTCAAGGTTGGTTGGTTTCT
CTGTAGCCGGCAGATTTTGTGTGAGGTATTTCCATATTCCGCGCATGACT
AATAAATTTCATTGCAGCATGATAGAACGAAAACAACCACCTTGCCTATC
TATGTGTATGTTGTTGTGCTTTGGCCCAAGGCTCCTTAAGGTCATTGTTC
AATTCCGATCCACTTGGATCGATTTCAAAAATTCCTACGAATGGATCAGG
AATATGTGCATTTTAATAGTTTTCTCACTTCTGGTGCCCCCAAAAGGTCT
TTCAGACCTCGCGGAATAAAATGCAAGAAAAACATCATCTATCATATCAA
ACCTCTTCATTGTGTCAGCGATACAACGCACTCTTAGTAGTTTTGAATAT
TTAGGCTTTCTCCCTTTCTTTGTGTTGCTGTCGCTCATGTTTGAATTACG
GGGCACCGGATCACATCGCTACCCTGATAATGCTTCCTGCGCAGGTTCAA
CGAAGCAGCCCGGTCAGCCCGATAGGAAGAGTGGAAAATATACGAGGACA
AGCATGGCGTACGCAGCCCAGATCGAATAAACCGATCTAAGCTACTGCTG
GTGTGTCGCACGGACATCATCAG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig104:533454..537626+

>mRNA_P-littoralis_Contig104.117.1 ID=mRNA_P-littoralis_Contig104.117.1|Name=mRNA_P-littoralis_Contig104.117.1|organism=Pylaiella littoralis U1_48|type=CDS|length=189bp|location=Sequence derived from alignment at P-littoralis_Contig104:533454..537626+ (Pylaiella littoralis U1_48)
ATGTCCAGATGCTTGGATGCTTGGATGCTTGTCTCCGCTGCTGATGATTC
TGATCGGGAGATGTCCGAGGGGACGGAGAGGACGAGACAGCAGGTTCAAC
GAAGCAGCCCGGTCAGCCCGATAGGAAGAGTGGAAAATATACGAGGACAA
GCATGGCGTACGCAGCCCAGATCGAATAAACCGATCTAA
back to top