mRNA_P-littoralis_Contig104.113.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig104.113.1
Unique NamemRNA_P-littoralis_Contig104.113.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig104.113.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig104contigP-littoralis_Contig104:528965..529728 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size764
Hectar predicted targeting categoryother localisation
Exons1
Cds size483
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789374.514078-UTR-P-littoralis_Contig104:528964..5292131680789374.514078-UTR-P-littoralis_Contig104:528964..529213Pylaiella littoralis U1_48UTRP-littoralis_Contig104 528965..529213 +
1680789374.5372102-UTR-P-littoralis_Contig104:529696..5297281680789374.5372102-UTR-P-littoralis_Contig104:529696..529728Pylaiella littoralis U1_48UTRP-littoralis_Contig104 529697..529728 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789374.5254133-CDS-P-littoralis_Contig104:529213..5296961680789374.5254133-CDS-P-littoralis_Contig104:529213..529696Pylaiella littoralis U1_48CDSP-littoralis_Contig104 529214..529696 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig104.113.1prot_P-littoralis_Contig104.113.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig104 529214..529696 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig104.113.1

>prot_P-littoralis_Contig104.113.1 ID=prot_P-littoralis_Contig104.113.1|Name=mRNA_P-littoralis_Contig104.113.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=161bp
MKRLHHGGARAREERGGVGWEWGVMSGYSGGVDHLAEENWRERDSGETFS
WVVMVVCSVGLGLDARPQTYLFLYLSVVSSERHPFTWLGKKGRGVGFPFG
GGVKYGRETGEDEKNAFRLSLRQATGSSCLDSFSGSVDVEVFRSMVTDAS
THAWIIVMCK*
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mRNA from alignment at P-littoralis_Contig104:528965..529728+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig104.113.1 ID=mRNA_P-littoralis_Contig104.113.1|Name=mRNA_P-littoralis_Contig104.113.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=764bp|location=Sequence derived from alignment at P-littoralis_Contig104:528965..529728+ (Pylaiella littoralis U1_48)
AGGGTTGTGTGGTGTGGTCTAGGTTCGGGTCTAAACGCGAGCCCTCAATC
CTTTTCTCTCCATTACAGCAGTGTTGGTAAAAAACATCTGTTCGCTTAGT
TAGCACAGTGAAAAAAGAGGTGTCGGGTTTCGTTTCGTTTGACGGCGTTA
AAATGGGAGGGAAAGGGGAGAAGATGATACACGCGTTTATTTCATCGCTC
GGGACAGGCTACAGGGTCGACTTGTCTCGACTCGTTCTCGGTTCGGTGGA
TGAAGCGATTACATCACGGGGGCGCGAGGGCTCGGGAAGAGAGAGGTGGT
GTTGGTTGGGAGTGGGGGGTGATGTCGGGTTACAGCGGTGGTGTTGACCA
CCTCGCCGAGGAAAACTGGAGAGAACGGGATAGTGGGGAAACATTTAGTT
GGGTTGTGATGGTGGTGTGTAGTGTAGGTTTGGGCTTAGACGCGAGGCCT
CAAACATACCTTTTTCTCTACTTAAGTGTGGTATCATCGGAGAGGCATCC
GTTTACCTGGCTCGGTAAAAAAGGCAGGGGTGTTGGGTTTCCGTTTGGCG
GCGGCGTTAAATATGGGAGGGAGACGGGAGAAGATGAGAAAAACGCGTTT
CGTTTATCGCTGAGACAGGCTACAGGGTCGAGCTGTCTTGATTCGTTCTC
CGGCTCGGTGGATGTAGAGGTGTTCCGTTCAATGGTGACGGATGCCTCAA
CACATGCATGGATAATTGTAATGTGTAAATAAGTTGCTGGGTTGCTCGTT
GCGTGTGGAGGGGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig104:528965..529728+

>mRNA_P-littoralis_Contig104.113.1 ID=mRNA_P-littoralis_Contig104.113.1|Name=mRNA_P-littoralis_Contig104.113.1|organism=Pylaiella littoralis U1_48|type=CDS|length=483bp|location=Sequence derived from alignment at P-littoralis_Contig104:528965..529728+ (Pylaiella littoralis U1_48)
ATGAAGCGATTACATCACGGGGGCGCGAGGGCTCGGGAAGAGAGAGGTGG
TGTTGGTTGGGAGTGGGGGGTGATGTCGGGTTACAGCGGTGGTGTTGACC
ACCTCGCCGAGGAAAACTGGAGAGAACGGGATAGTGGGGAAACATTTAGT
TGGGTTGTGATGGTGGTGTGTAGTGTAGGTTTGGGCTTAGACGCGAGGCC
TCAAACATACCTTTTTCTCTACTTAAGTGTGGTATCATCGGAGAGGCATC
CGTTTACCTGGCTCGGTAAAAAAGGCAGGGGTGTTGGGTTTCCGTTTGGC
GGCGGCGTTAAATATGGGAGGGAGACGGGAGAAGATGAGAAAAACGCGTT
TCGTTTATCGCTGAGACAGGCTACAGGGTCGAGCTGTCTTGATTCGTTCT
CCGGCTCGGTGGATGTAGAGGTGTTCCGTTCAATGGTGACGGATGCCTCA
ACACATGCATGGATAATTGTAATGTGTAAATAA
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