mRNA_P-littoralis_Contig1039.27.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1039.27.1
Unique NamemRNA_P-littoralis_Contig1039.27.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1039.27.1 vs. uniprot
Match: A0A6H5K3H5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3H5_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 9.930e-35
Identity = 61/95 (64.21%), Postives = 72/95 (75.79%), Query Frame = 1 
Query:    1 DVTTDTFYNIFSHETRRADWIVTSPPYKTVFAILKQALRIGRVGVAFKLRLDFLQPRKTRGQWLADNSPHVVVVLPRATYRGRRSYSTEAWFVWN 285
            D T++ F  +FS E +R DWIVTSPPY   F+IL +AL + RVGVAFKLRL FL+P KTRG+WL DN P  VVVLPRATY GR   STEAWF+W+
Sbjct:   66 DATSEEFTAMFSTEGQRPDWIVTSPPYGNAFSILVRALGVVRVGVAFKLRLSFLEPTKTRGKWLKDNPPSAVVVLPRATYCGRVCSSTEAWFIWH 160
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BLAST of mRNA_P-littoralis_Contig1039.27.1 vs. uniprot
Match: A0A6H5K6T5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6T5_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 2.580e-18
Identity = 37/55 (67.27%), Postives = 42/55 (76.36%), Query Frame = 1 
Query:  127 VGVAFKLRLDFLQPRKTRGQWLADNSPHVVVVLPRATYRGRRSYSTEAWFVWNKR 291
            +GVAFKLRL FL P K+RG+WL DN P  +V+LPRATYR RR  STE WFVW  R
Sbjct:    1 MGVAFKLRLTFLGPAKSRGRWLKDNPPDRIVMLPRATYRRRRCSSTETWFVWETR 55
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BLAST of mRNA_P-littoralis_Contig1039.27.1 vs. uniprot
Match: A0A6H5L6X2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6X2_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 6.500e-16
Identity = 46/74 (62.16%), Postives = 48/74 (64.86%), Query Frame = -2 
Query:    6 GSTTTT*GELSASHCPLVFLGCRKSSLSLNATPTRPIRSACFKIANTVLYGGLVTIQSARRVSWLKML*NVSVV 227
            G TT        SHCPLV +G RK SLSLNATPTRPI  A FKIA   LYGGLVT  S RR S  K+  NVSVV
Sbjct:  160 GMTTPVAEAKHLSHCPLVLVGSRKVSLSLNATPTRPILKARFKIAKACLYGGLVTTHSGRRPSSQKVSTNVSVV 233
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BLAST of mRNA_P-littoralis_Contig1039.27.1 vs. uniprot
Match: A0A252D8B1_9NOSO (Uncharacterized protein n=1 Tax=Nostoc sp. RF31YmG TaxID=1932668 RepID=A0A252D8B1_9NOSO)

HSP 1 Score: 77.0 bits (188), Expect = 2.420e-15
Identity = 37/80 (46.25%), Postives = 52/80 (65.00%), Query Frame = 1 
Query:   55 DWIVTSPPYKTVFAILKQALRIGRVGVAFKLRLDFLQPRKTRGQWLADNSPHVVVVLPRATYRG--RRSYSTEAWFVWNK 288
            DW+VT+PP+ +   IL +A     VGVAF LRL +L+P K RGQWLA++ P ++V LPR ++ G  +    T AW +W K
Sbjct:   86 DWVVTNPPFDSASKILPKAYEYASVGVAFLLRLSYLEPCKDRGQWLAEHPPKLIV-LPRISFTGDGKVDSCTCAWMIWKK 164
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BLAST of mRNA_P-littoralis_Contig1039.27.1 vs. uniprot
Match: A0A1V5ZCZ4_9BACT (Uncharacterized protein n=1 Tax=Candidatus Hydrogenedentes bacterium ADurb.Bin179 TaxID=1852849 RepID=A0A1V5ZCZ4_9BACT)

HSP 1 Score: 62.0 bits (149), Expect = 2.170e-9
Identity = 35/92 (38.04%), Postives = 48/92 (52.17%), Query Frame = 1 
Query:   55 DWIVTSPPYKTVFAILKQALRIGRVGVAFKLRLDFLQPRKTRGQWL---ADNSPHVVVVLPRATYRGR-------RSYSTE----AWFVWNK 288
            DW+VT+PP+     IL  A+   RVGVAF LRL +++P  TR  WL   AD   +   + PR  +R         + Y T+    AWFVW +
Sbjct:   84 DWVVTNPPFSLAEDILANAMSYARVGVAFLLRLSYMEPVTTRAAWLNGYADKMIYQGALNPRPHFRKGEINPKTGKKYGTDNVTVAWFVWRR 175
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BLAST of mRNA_P-littoralis_Contig1039.27.1 vs. uniprot
Match: UPI000E0E050B (SAM-dependent DNA methyltransferase n=2 Tax=Microvirga TaxID=186650 RepID=UPI000E0E050B)

HSP 1 Score: 53.1 bits (126), Expect = 6.300e-6
Identity = 31/87 (35.63%), Postives = 43/87 (49.43%), Query Frame = 1 
Query:   43 TRRADWIVTSPPYKTVFAILKQALRIGRVGVAFKLRLDFLQPRKTRGQWLADNSPHVVVV----LPRATYRGRRSYSTE---AWFVW 282
            T   DW++T+PP+   +  L+QA+RI R GVAF +RL +L+ +           P VV V    LP          ST    AW+VW
Sbjct:   98 TALVDWVITNPPFDHAYEFLEQAMRIARRGVAFLVRLAWLESKGRYNSLWTQTPPSVVAVFTERLPMCLGGWDPKLSTATAYAWYVW 184
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1039.27.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5K3H5_9PHAE9.930e-3564.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6T5_9PHAE2.580e-1867.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L6X2_9PHAE6.500e-1662.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A252D8B1_9NOSO2.420e-1546.25Uncharacterized protein n=1 Tax=Nostoc sp. RF31YmG... [more]
A0A1V5ZCZ4_9BACT2.170e-938.04Uncharacterized protein n=1 Tax=Candidatus Hydroge... [more]
UPI000E0E050B6.300e-635.63SAM-dependent DNA methyltransferase n=2 Tax=Microv... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1039contigP-littoralis_Contig1039:67057..67390 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog211165.AJLN01000060_gene3855
Preferred nameksgA
PFAMsCTP_transf_like,Glyco_trans_1_4,Glycos_transf_2,Methyltransf_11,Methyltransf_12,Methyltransf_23,RrnaAD
Model size334
Max annot lvl2|Bacteria
KEGG rclassRC00003,RC03257
KEGG koko:K02528,ko:K20444
KEGG TC4.D.1.3
KEGG ReactionR10716
Hectar predicted targeting categoryother localisation
GOsGO:0000154,GO:0000179,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016433,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360
Exons1
Evalue9.01e-13
EggNOG OGsCOG0030@1|root,COG0030@2|Bacteria
EC2.1.1.182
DescriptionrRNA (adenine-N6,N6-)-dimethyltransferase activity
Cds size333
COG categoryJ
CAZyGT2,GT4
BRITEko00000,ko01000,ko01005,ko02000,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789373.932282-CDS-P-littoralis_Contig1039:67057..673901680789373.932282-CDS-P-littoralis_Contig1039:67057..67390Pylaiella littoralis U1_48CDSP-littoralis_Contig1039 67058..67390 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1039.27.1prot_P-littoralis_Contig1039.27.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1039 67058..67390 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1039.27.1

>prot_P-littoralis_Contig1039.27.1 ID=prot_P-littoralis_Contig1039.27.1|Name=mRNA_P-littoralis_Contig1039.27.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=111bp
DVTTDTFYNIFSHETRRADWIVTSPPYKTVFAILKQALRIGRVGVAFKLR
LDFLQPRKTRGQWLADNSPHVVVVLPRATYRGRRSYSTEAWFVWNKRKTE
GRTRSTFRFAG
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mRNA from alignment at P-littoralis_Contig1039:67057..67390-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1039.27.1 ID=mRNA_P-littoralis_Contig1039.27.1|Name=mRNA_P-littoralis_Contig1039.27.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=334bp|location=Sequence derived from alignment at P-littoralis_Contig1039:67057..67390- (Pylaiella littoralis U1_48)
GACGTGACGACGGACACGTTTTACAACATCTTCAGCCACGAGACGCGCCG
CGCGGACTGGATCGTGACGAGCCCGCCGTACAAGACCGTATTTGCTATTT
TGAAGCAGGCGCTACGGATCGGGCGCGTTGGGGTGGCGTTCAAGCTCAGG
CTCGATTTCCTGCAGCCCAGAAAAACCAGGGGGCAGTGGCTCGCCGATAA
CTCTCCTCATGTGGTGGTAGTGCTACCGCGCGCTACATACCGTGGTAGAC
GCTCTTACTCGACGGAGGCTTGGTTCGTATGGAACAAGCGAAAAACGGAG
GGACGCACTAGGTCTACTTTTCGCTTCGCAGGAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1039:67057..67390-

>mRNA_P-littoralis_Contig1039.27.1 ID=mRNA_P-littoralis_Contig1039.27.1|Name=mRNA_P-littoralis_Contig1039.27.1|organism=Pylaiella littoralis U1_48|type=CDS|length=333bp|location=Sequence derived from alignment at P-littoralis_Contig1039:67057..67390- (Pylaiella littoralis U1_48)
GACGTGACGACGGACACGTTTTACAACATCTTCAGCCACGAGACGCGCCG
CGCGGACTGGATCGTGACGAGCCCGCCGTACAAGACCGTATTTGCTATTT
TGAAGCAGGCGCTACGGATCGGGCGCGTTGGGGTGGCGTTCAAGCTCAGG
CTCGATTTCCTGCAGCCCAGAAAAACCAGGGGGCAGTGGCTCGCCGATAA
CTCTCCTCATGTGGTGGTAGTGCTACCGCGCGCTACATACCGTGGTAGAC
GCTCTTACTCGACGGAGGCTTGGTTCGTATGGAACAAGCGAAAAACGGAG
GGACGCACTAGGTCTACTTTTCGCTTCGCAGGA
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