mRNA_P-littoralis_Contig1039.16.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig1039.16.1 vs. uniprot
Match: A0A6H5JT91_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT91_9PHAE) HSP 1 Score: 110 bits (274), Expect = 1.750e-26 Identity = 55/99 (55.56%), Postives = 65/99 (65.66%), Query Frame = 1
Query: 1 GPLEASHGGSNYMVGFVDSCSRRGQVYGMRTKADLLVYVQKFIADI---GKPKCFRMDNAGENTSRRFVTFCDENAIRREYTAPHTGQQNAPVESLLWR 288
GP + GS Y++ FVDS SR + YGMR K+D L Y ++F+AD+ G CFRM NAGE TS FV FCD IRREYTAP T QNA VES +WR
Sbjct: 160 GPYSQAFDGSRYLIMFVDSASRWQRAYGMRAKSDTLTYTRRFLADLNGDGPLGCFRMGNAGEFTSAAFVAFCDAAGIRREYTAPDTPNQNAIVESAIWR 258
BLAST of mRNA_P-littoralis_Contig1039.16.1 vs. uniprot
Match: A0A6H5JK88_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK88_9PHAE) HSP 1 Score: 92.8 bits (229), Expect = 1.700e-21 Identity = 46/84 (54.76%), Postives = 55/84 (65.48%), Query Frame = 1
Query: 46 FVDSCSRRGQVYGMRTKADLLVYVQKFIADI---GKPKCFRMDNAGENTSRRFVTFCDENAIRREYTAPHTGQQNAPVESLLWR 288
F+DS S + YGMR K D L +VQ+F+AD+ G P CFRMDN GE F +FCD IRREY AP T QNA VES++WR
Sbjct: 2 FMDSASPWHRGYGMRAKNDTLKFVQRFLADMNGMGTPGCFRMDNGGEFNGSVFTSFCDAAGIRREYAAPDTPNQNAVVESVIWR 85
BLAST of mRNA_P-littoralis_Contig1039.16.1 vs. uniprot
Match: A0A6H5L2H0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2H0_9PHAE) HSP 1 Score: 86.3 bits (212), Expect = 1.220e-17 Identity = 46/101 (45.54%), Postives = 59/101 (58.42%), Query Frame = 1
Query: 1 GPLEASHGGSNYMVGFVDSCSRRGQVYGMRTKADLLVYVQKFIA-----DIGKPKCFRMDNAGENTSRRFVTFCDENAIRREYTAPHTGQQNAPVESLLWR 288
GPL S GG+ Y+ VDS SR +VYG+R K+D L ++ +A D+G+ KCFR+DN E T F FCD N I E+T P Q N VES +WR
Sbjct: 160 GPLVPSLGGNLYLFVAVDSASRWNKVYGLRRKSDALAATKRLLAGVGRYDLGRIKCFRVDNGTEWTRGDFRRFCDHNGIGVEFTPPGVPQYNGVVESAIWR 260
BLAST of mRNA_P-littoralis_Contig1039.16.1 vs. uniprot
Match: A0A371F324_MUCPR (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Mucuna pruriens TaxID=157652 RepID=A0A371F324_MUCPR) HSP 1 Score: 72.4 bits (176), Expect = 3.910e-13 Identity = 37/96 (38.54%), Postives = 52/96 (54.17%), Query Frame = 1
Query: 7 LEASHGGSNYMVGFVDSCSRRGQVYGMRTKADLLVYVQKFIADIG-----KPKCFRMDNAGENTSRRFVTFCDENAIRREYTAPHTGQQNAPVESL 279
LE S G+ Y V F+D SRR VY ++TK+ + ++F A + K KC R DN GE F+ FC + I R+++ PHT QQN E +
Sbjct: 70 LEISMEGAKYFVSFIDDYSRRLWVYPIKTKSSVFSQFKEFKAQVELETGRKIKCLRTDNGGEYVDGEFLAFCKQEGIVRQFSVPHTPQQNGVAERM 165
BLAST of mRNA_P-littoralis_Contig1039.16.1 vs. uniprot
Match: A0A5D3CXA6_CUCME (Uncharacterized protein n=3 Tax=Cucumis melo TaxID=3656 RepID=A0A5D3CXA6_CUCME) HSP 1 Score: 67.4 bits (163), Expect = 5.070e-11 Identity = 35/96 (36.46%), Postives = 51/96 (53.12%), Query Frame = 1
Query: 7 LEASHGGSNYMVGFVDSCSRRGQVYGMRTKADLLVYVQKFIADIG-----KPKCFRMDNAGENTSRRFVTFCDENAIRREYTAPHTGQQNAPVESL 279
L S GG+ Y V F+D S+R VY ++ K D+ + F + K KC R DN GE FV FC++ I+R++TA +T QQN + +
Sbjct: 408 LVTSLGGARYFVFFIDDYSKRCWVYPIKKKTDVYSVFKVFKVQVELQYGKKIKCLRTDNGGEYIRNEFVEFCNQEGIKRQFTAAYTPQQNGVAQRM 503
BLAST of mRNA_P-littoralis_Contig1039.16.1 vs. uniprot
Match: UPI001C687D6C (uncharacterized protein LOC111887908 n=1 Tax=Lactuca sativa TaxID=4236 RepID=UPI001C687D6C) HSP 1 Score: 67.4 bits (163), Expect = 5.300e-11 Identity = 38/97 (39.18%), Postives = 58/97 (59.79%), Query Frame = 1
Query: 1 GPLE-ASHGGSNYMVGFVDSCSRRGQVYGMRTKADLLVYVQKFIA----DIGKP-KCFRMDNAGENTSRRFVTFCDENAIRREYTAPHTGQQNAPVE 273
GP+ A+ G + Y+ +D SR +Y ++ K++ + +KF A +IGKP K FR D GE TS F +FC++N ++R TAP++ QQN VE
Sbjct: 567 GPITPATKGQNRYIFTLIDDFSRFMWIYLIKEKSEAFTHFKKFKALVENEIGKPLKVFRSDRGGEFTSLEFNSFCEQNGVKRNLTAPYSPQQNGIVE 663
BLAST of mRNA_P-littoralis_Contig1039.16.1 vs. uniprot
Match: A0A392LZ71_9FABA (Retrovirus-related pol polyprotein from transposon tnt 1-94 n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392LZ71_9FABA) HSP 1 Score: 65.5 bits (158), Expect = 1.060e-10 Identity = 37/95 (38.95%), Postives = 53/95 (55.79%), Query Frame = 1
Query: 1 GPL-EASHGGSNYMVGFVDSCSRRGQVYGMRTKADLLVYVQKFIADI---GKPKCFRMDNAGENTSRRFVTFCDENAIRREYTAPHTGQQNAPVE 273
GP E S GG+ Y + FVD SR+ +Y ++TK ++ ++F A + + R D GE TS++F +FC EN I E TAP+T Q N E
Sbjct: 16 GPFDEKSLGGNRYFITFVDEYSRKMWIYLIQTKDEVFDEFKRFKALVENQSSKRILRTDGGGEYTSKKFESFCVENGIEHEVTAPYTPQHNGLAE 110
BLAST of mRNA_P-littoralis_Contig1039.16.1 vs. uniprot
Match: A0A2Z6LPV5_TRISU (RNA-directed DNA polymerase n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6LPV5_TRISU) HSP 1 Score: 65.1 bits (157), Expect = 3.490e-10 Identity = 38/97 (39.18%), Postives = 54/97 (55.67%), Query Frame = 1
Query: 1 GPL-EASHGGSNYMVGFVDSCSRRGQVYGMRTKADLLVYVQKFIADIGKP-----KCFRMDNAGENTSRRFVTFCDENAIRREYTAPHTGQQNAPVE 273
GP E S GG+ + + FVD SR+ +Y ++TK + ++KF A + K R+D GE TS++F +FC EN I E TAP+T Q N E
Sbjct: 468 GPFDEKSLGGNRHFMTFVDEYSRKMWIYLIQTKDEAFDVLKKFKAVVENQSSRRIKILRIDGGGEYTSKKFESFCVENGIEHEVTAPYTPQHNGLAE 564
BLAST of mRNA_P-littoralis_Contig1039.16.1 vs. uniprot
Match: A0A0V0H6H2_SOLCH (Putative ovule protein (Fragment) n=1 Tax=Solanum chacoense TaxID=4108 RepID=A0A0V0H6H2_SOLCH) HSP 1 Score: 63.9 bits (154), Expect = 3.690e-10 Identity = 36/97 (37.11%), Postives = 52/97 (53.61%), Query Frame = 1
Query: 1 GPLEA-SHGGSNYMVGFVDSCSRRGQVYGMRTKADLLVYVQKFIADIGKP-----KCFRMDNAGENTSRRFVTFCDENAIRREYTAPHTGQQNAPVE 273
GP+ S GGS Y + F D SR +Y ++ K++ +KF + + + K R D GE S+ F +FC+EN I RE TAP+T +QN E
Sbjct: 79 GPMSVESLGGSRYFLLFTDDYSRMSWIYFLKFKSETFDNFKKFKSFVERQSGCRLKTLRTDRGGEFMSKEFSSFCEENGIHRELTAPYTPEQNGVAE 175
BLAST of mRNA_P-littoralis_Contig1039.16.1 vs. uniprot
Match: A0A2K3PRX1_TRIPR (Copia-type polyprotein n=2 Tax=Trifolium TaxID=3898 RepID=A0A2K3PRX1_TRIPR) HSP 1 Score: 63.2 bits (152), Expect = 1.610e-9 Identity = 37/97 (38.14%), Postives = 52/97 (53.61%), Query Frame = 1
Query: 1 GPLEA-SHGGSNYMVGFVDSCSRRGQVYGMRTKADLLVYVQKFIADIGKP-----KCFRMDNAGENTSRRFVTFCDENAIRREYTAPHTGQQNAPVE 273
GP + S GG+ Y + FVD SR+ +Y +++K ++ ++F A + K R D GE TSR F +FC EN I E TAP+T Q N E
Sbjct: 209 GPFDVKSLGGNRYFITFVDEYSRKMWIYLIQSKDEVFDVFKRFKALVENQSSKRIKILRTDGGGEYTSRSFESFCVENGIEHEVTAPYTPQHNGLAE 305 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1039.16.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1039.16.1 >prot_P-littoralis_Contig1039.16.1 ID=prot_P-littoralis_Contig1039.16.1|Name=mRNA_P-littoralis_Contig1039.16.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=96bp GPLEASHGGSNYMVGFVDSCSRRGQVYGMRTKADLLVYVQKFIADIGKPKback to top mRNA from alignment at P-littoralis_Contig1039:38618..39240- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1039.16.1 ID=mRNA_P-littoralis_Contig1039.16.1|Name=mRNA_P-littoralis_Contig1039.16.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=623bp|location=Sequence derived from alignment at P-littoralis_Contig1039:38618..39240- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1039:38618..39240- >mRNA_P-littoralis_Contig1039.16.1 ID=mRNA_P-littoralis_Contig1039.16.1|Name=mRNA_P-littoralis_Contig1039.16.1|organism=Pylaiella littoralis U1_48|type=CDS|length=288bp|location=Sequence derived from alignment at P-littoralis_Contig1039:38618..39240- (Pylaiella littoralis U1_48)back to top |