mRNA_P-littoralis_Contig1039.16.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1039.16.1
Unique NamemRNA_P-littoralis_Contig1039.16.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1039.16.1 vs. uniprot
Match: A0A6H5JT91_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT91_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 1.750e-26
Identity = 55/99 (55.56%), Postives = 65/99 (65.66%), Query Frame = 1
Query:    1 GPLEASHGGSNYMVGFVDSCSRRGQVYGMRTKADLLVYVQKFIADI---GKPKCFRMDNAGENTSRRFVTFCDENAIRREYTAPHTGQQNAPVESLLWR 288
            GP   +  GS Y++ FVDS SR  + YGMR K+D L Y ++F+AD+   G   CFRM NAGE TS  FV FCD   IRREYTAP T  QNA VES +WR
Sbjct:  160 GPYSQAFDGSRYLIMFVDSASRWQRAYGMRAKSDTLTYTRRFLADLNGDGPLGCFRMGNAGEFTSAAFVAFCDAAGIRREYTAPDTPNQNAIVESAIWR 258          
BLAST of mRNA_P-littoralis_Contig1039.16.1 vs. uniprot
Match: A0A6H5JK88_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK88_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 1.700e-21
Identity = 46/84 (54.76%), Postives = 55/84 (65.48%), Query Frame = 1
Query:   46 FVDSCSRRGQVYGMRTKADLLVYVQKFIADI---GKPKCFRMDNAGENTSRRFVTFCDENAIRREYTAPHTGQQNAPVESLLWR 288
            F+DS S   + YGMR K D L +VQ+F+AD+   G P CFRMDN GE     F +FCD   IRREY AP T  QNA VES++WR
Sbjct:    2 FMDSASPWHRGYGMRAKNDTLKFVQRFLADMNGMGTPGCFRMDNGGEFNGSVFTSFCDAAGIRREYAAPDTPNQNAVVESVIWR 85          
BLAST of mRNA_P-littoralis_Contig1039.16.1 vs. uniprot
Match: A0A6H5L2H0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2H0_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 1.220e-17
Identity = 46/101 (45.54%), Postives = 59/101 (58.42%), Query Frame = 1
Query:    1 GPLEASHGGSNYMVGFVDSCSRRGQVYGMRTKADLLVYVQKFIA-----DIGKPKCFRMDNAGENTSRRFVTFCDENAIRREYTAPHTGQQNAPVESLLWR 288
            GPL  S GG+ Y+   VDS SR  +VYG+R K+D L   ++ +A     D+G+ KCFR+DN  E T   F  FCD N I  E+T P   Q N  VES +WR
Sbjct:  160 GPLVPSLGGNLYLFVAVDSASRWNKVYGLRRKSDALAATKRLLAGVGRYDLGRIKCFRVDNGTEWTRGDFRRFCDHNGIGVEFTPPGVPQYNGVVESAIWR 260          
BLAST of mRNA_P-littoralis_Contig1039.16.1 vs. uniprot
Match: A0A371F324_MUCPR (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Mucuna pruriens TaxID=157652 RepID=A0A371F324_MUCPR)

HSP 1 Score: 72.4 bits (176), Expect = 3.910e-13
Identity = 37/96 (38.54%), Postives = 52/96 (54.17%), Query Frame = 1
Query:    7 LEASHGGSNYMVGFVDSCSRRGQVYGMRTKADLLVYVQKFIADIG-----KPKCFRMDNAGENTSRRFVTFCDENAIRREYTAPHTGQQNAPVESL 279
            LE S  G+ Y V F+D  SRR  VY ++TK+ +    ++F A +      K KC R DN GE     F+ FC +  I R+++ PHT QQN   E +
Sbjct:   70 LEISMEGAKYFVSFIDDYSRRLWVYPIKTKSSVFSQFKEFKAQVELETGRKIKCLRTDNGGEYVDGEFLAFCKQEGIVRQFSVPHTPQQNGVAERM 165          
BLAST of mRNA_P-littoralis_Contig1039.16.1 vs. uniprot
Match: A0A5D3CXA6_CUCME (Uncharacterized protein n=3 Tax=Cucumis melo TaxID=3656 RepID=A0A5D3CXA6_CUCME)

HSP 1 Score: 67.4 bits (163), Expect = 5.070e-11
Identity = 35/96 (36.46%), Postives = 51/96 (53.12%), Query Frame = 1
Query:    7 LEASHGGSNYMVGFVDSCSRRGQVYGMRTKADLLVYVQKFIADIG-----KPKCFRMDNAGENTSRRFVTFCDENAIRREYTAPHTGQQNAPVESL 279
            L  S GG+ Y V F+D  S+R  VY ++ K D+    + F   +      K KC R DN GE     FV FC++  I+R++TA +T QQN   + +
Sbjct:  408 LVTSLGGARYFVFFIDDYSKRCWVYPIKKKTDVYSVFKVFKVQVELQYGKKIKCLRTDNGGEYIRNEFVEFCNQEGIKRQFTAAYTPQQNGVAQRM 503          
BLAST of mRNA_P-littoralis_Contig1039.16.1 vs. uniprot
Match: UPI001C687D6C (uncharacterized protein LOC111887908 n=1 Tax=Lactuca sativa TaxID=4236 RepID=UPI001C687D6C)

HSP 1 Score: 67.4 bits (163), Expect = 5.300e-11
Identity = 38/97 (39.18%), Postives = 58/97 (59.79%), Query Frame = 1
Query:    1 GPLE-ASHGGSNYMVGFVDSCSRRGQVYGMRTKADLLVYVQKFIA----DIGKP-KCFRMDNAGENTSRRFVTFCDENAIRREYTAPHTGQQNAPVE 273
            GP+  A+ G + Y+   +D  SR   +Y ++ K++   + +KF A    +IGKP K FR D  GE TS  F +FC++N ++R  TAP++ QQN  VE
Sbjct:  567 GPITPATKGQNRYIFTLIDDFSRFMWIYLIKEKSEAFTHFKKFKALVENEIGKPLKVFRSDRGGEFTSLEFNSFCEQNGVKRNLTAPYSPQQNGIVE 663          
BLAST of mRNA_P-littoralis_Contig1039.16.1 vs. uniprot
Match: A0A392LZ71_9FABA (Retrovirus-related pol polyprotein from transposon tnt 1-94 n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392LZ71_9FABA)

HSP 1 Score: 65.5 bits (158), Expect = 1.060e-10
Identity = 37/95 (38.95%), Postives = 53/95 (55.79%), Query Frame = 1
Query:    1 GPL-EASHGGSNYMVGFVDSCSRRGQVYGMRTKADLLVYVQKFIADI---GKPKCFRMDNAGENTSRRFVTFCDENAIRREYTAPHTGQQNAPVE 273
            GP  E S GG+ Y + FVD  SR+  +Y ++TK ++    ++F A +      +  R D  GE TS++F +FC EN I  E TAP+T Q N   E
Sbjct:   16 GPFDEKSLGGNRYFITFVDEYSRKMWIYLIQTKDEVFDEFKRFKALVENQSSKRILRTDGGGEYTSKKFESFCVENGIEHEVTAPYTPQHNGLAE 110          
BLAST of mRNA_P-littoralis_Contig1039.16.1 vs. uniprot
Match: A0A2Z6LPV5_TRISU (RNA-directed DNA polymerase n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6LPV5_TRISU)

HSP 1 Score: 65.1 bits (157), Expect = 3.490e-10
Identity = 38/97 (39.18%), Postives = 54/97 (55.67%), Query Frame = 1
Query:    1 GPL-EASHGGSNYMVGFVDSCSRRGQVYGMRTKADLLVYVQKFIADIGKP-----KCFRMDNAGENTSRRFVTFCDENAIRREYTAPHTGQQNAPVE 273
            GP  E S GG+ + + FVD  SR+  +Y ++TK +    ++KF A +        K  R+D  GE TS++F +FC EN I  E TAP+T Q N   E
Sbjct:  468 GPFDEKSLGGNRHFMTFVDEYSRKMWIYLIQTKDEAFDVLKKFKAVVENQSSRRIKILRIDGGGEYTSKKFESFCVENGIEHEVTAPYTPQHNGLAE 564          
BLAST of mRNA_P-littoralis_Contig1039.16.1 vs. uniprot
Match: A0A0V0H6H2_SOLCH (Putative ovule protein (Fragment) n=1 Tax=Solanum chacoense TaxID=4108 RepID=A0A0V0H6H2_SOLCH)

HSP 1 Score: 63.9 bits (154), Expect = 3.690e-10
Identity = 36/97 (37.11%), Postives = 52/97 (53.61%), Query Frame = 1
Query:    1 GPLEA-SHGGSNYMVGFVDSCSRRGQVYGMRTKADLLVYVQKFIADIGKP-----KCFRMDNAGENTSRRFVTFCDENAIRREYTAPHTGQQNAPVE 273
            GP+   S GGS Y + F D  SR   +Y ++ K++     +KF + + +      K  R D  GE  S+ F +FC+EN I RE TAP+T +QN   E
Sbjct:   79 GPMSVESLGGSRYFLLFTDDYSRMSWIYFLKFKSETFDNFKKFKSFVERQSGCRLKTLRTDRGGEFMSKEFSSFCEENGIHRELTAPYTPEQNGVAE 175          
BLAST of mRNA_P-littoralis_Contig1039.16.1 vs. uniprot
Match: A0A2K3PRX1_TRIPR (Copia-type polyprotein n=2 Tax=Trifolium TaxID=3898 RepID=A0A2K3PRX1_TRIPR)

HSP 1 Score: 63.2 bits (152), Expect = 1.610e-9
Identity = 37/97 (38.14%), Postives = 52/97 (53.61%), Query Frame = 1
Query:    1 GPLEA-SHGGSNYMVGFVDSCSRRGQVYGMRTKADLLVYVQKFIADIGKP-----KCFRMDNAGENTSRRFVTFCDENAIRREYTAPHTGQQNAPVE 273
            GP +  S GG+ Y + FVD  SR+  +Y +++K ++    ++F A +        K  R D  GE TSR F +FC EN I  E TAP+T Q N   E
Sbjct:  209 GPFDVKSLGGNRYFITFVDEYSRKMWIYLIQSKDEVFDVFKRFKALVENQSSKRIKILRTDGGGEYTSRSFESFCVENGIEHEVTAPYTPQHNGLAE 305          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1039.16.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JT91_9PHAE1.750e-2655.56Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JK88_9PHAE1.700e-2154.76Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L2H0_9PHAE1.220e-1745.54Integrase catalytic domain-containing protein n=1 ... [more]
A0A371F324_MUCPR3.910e-1338.54Integrase catalytic domain-containing protein (Fra... [more]
A0A5D3CXA6_CUCME5.070e-1136.46Uncharacterized protein n=3 Tax=Cucumis melo TaxID... [more]
UPI001C687D6C5.300e-1139.18uncharacterized protein LOC111887908 n=1 Tax=Lactu... [more]
A0A392LZ71_9FABA1.060e-1038.95Retrovirus-related pol polyprotein from transposon... [more]
A0A2Z6LPV5_TRISU3.490e-1039.18RNA-directed DNA polymerase n=1 Tax=Trifolium subt... [more]
A0A0V0H6H2_SOLCH3.690e-1037.11Putative ovule protein (Fragment) n=1 Tax=Solanum ... [more]
A0A2K3PRX1_TRIPR1.610e-938.14Copia-type polyprotein n=2 Tax=Trifolium TaxID=389... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1039contigP-littoralis_Contig1039:38618..39240 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog4081.Solyc09g015410.1.1
PFAMsRVT_2,Retrotran_gag_2,Retrotran_gag_3,Retrotrans_gag,gag_pre-integrs,rve,zf-CCHC
Model size288
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.36e-13
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,37THH@33090|Viridiplantae,3GG2K@35493|Streptophyta,44UC5@71274|asterids
DescriptionMitochondrial protein
Cds size288
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789373.7798193-CDS-P-littoralis_Contig1039:38617..387531680789373.7798193-CDS-P-littoralis_Contig1039:38617..38753Pylaiella littoralis U1_48CDSP-littoralis_Contig1039 38618..38753 -
1680789373.7951913-CDS-P-littoralis_Contig1039:39088..392401680789373.7951913-CDS-P-littoralis_Contig1039:39088..39240Pylaiella littoralis U1_48CDSP-littoralis_Contig1039 39089..39240 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1039.16.1prot_P-littoralis_Contig1039.16.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1039 38618..39240 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1039.16.1

>prot_P-littoralis_Contig1039.16.1 ID=prot_P-littoralis_Contig1039.16.1|Name=mRNA_P-littoralis_Contig1039.16.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=96bp
GPLEASHGGSNYMVGFVDSCSRRGQVYGMRTKADLLVYVQKFIADIGKPK
CFRMDNAGENTSRRFVTFCDENAIRREYTAPHTGQQNAPVESLLWR
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mRNA from alignment at P-littoralis_Contig1039:38618..39240-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1039.16.1 ID=mRNA_P-littoralis_Contig1039.16.1|Name=mRNA_P-littoralis_Contig1039.16.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=623bp|location=Sequence derived from alignment at P-littoralis_Contig1039:38618..39240- (Pylaiella littoralis U1_48)
GGGCCTTTAGAGGCGTCGCACGGGGGGTCCAACTACATGGTCGGCTTCGT CGACAGCTGTTCTCGGCGCGGCCAGGTCTATGGCATGCGCACCAAGGCGG ACCTTCTCGTCTACGTTCAAAAGTTCATCGCGGACATCGGCAAACCGAAG TGTGTGTGTGTGTGTCGTCATCCCATATTCTCTGGCACACTAGTCTGCAC CTCGCGGTTCAAACTACAGGCTAGGCCCATCGACGGGGTCACACAGGAGG AAGGTCAACACAGGAGGAGTTACCCCCACCTTCCTTCTGCGGTACATGCG TGAGATTTTTTCTCGCGAGCAGGGATCCGCGGTCCCTACCCTCGTCGGCG AAGCCGAATCTGCTTTTACTCACAGCATAGCCGCTTTCAAAGTAGCAAAG GAACACATTCACCGGGAATCGAACCCCCGTTCCTCTGCATCTAGTGGTTA ACGAGGGGACCACTAGTCCACCGGTCGTGTGTGTGTGCTTCCGTATGGAC AACGCCGGCGAGAATACCAGCCGGCGTTTCGTGACTTTCTGCGACGAAAA CGCCATTCGGCGTGAGTACACCGCGCCGCACACCGGGCAACAAAACGCCC CCGTCGAAAGTTTGCTGTGGCGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig1039:38618..39240-

>mRNA_P-littoralis_Contig1039.16.1 ID=mRNA_P-littoralis_Contig1039.16.1|Name=mRNA_P-littoralis_Contig1039.16.1|organism=Pylaiella littoralis U1_48|type=CDS|length=288bp|location=Sequence derived from alignment at P-littoralis_Contig1039:38618..39240- (Pylaiella littoralis U1_48)
GGGCCTTTAGAGGCGTCGCACGGGGGGTCCAACTACATGGTCGGCTTCGT
CGACAGCTGTTCTCGGCGCGGCCAGGTCTATGGCATGCGCACCAAGGCGG
ACCTTCTCGTCTACGTTCAAAAGTTCATCGCGGACATCGGCAAACCGAAG
TGCTTCCGTATGGACAACGCCGGCGAGAATACCAGCCGGCGTTTCGTGAC
TTTCTGCGACGAAAACGCCATTCGGCGTGAGTACACCGCGCCGCACACCG
GGCAACAAAACGCCCCCGTCGAAAGTTTGCTGTGGCGT
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