mRNA_P-littoralis_Contig1038.3.2 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig1038.3.2 vs. uniprot
Match: D8LEM0_ECTSI (PHD-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEM0_ECTSI) HSP 1 Score: 441 bits (1134), Expect = 1.050e-138 Identity = 375/855 (43.86%), Postives = 461/855 (53.92%), Query Frame = 1
Query: 277 DRVTLEIKGAKLNVAVQNALRRRRSHDRSPTSGPRGAVEGSCRNDGAENQDPNGNGSFNNSDGQGPAGGGQHQQRLGLNSTGTSFSYGQDAGPVKEVALLKVTVESLRAGLREKEDAVTEAEREKEGLLEQVASLESTTGENIQLAQKVTKLERQIERLEAKLTEAEAGRALTMTLVDTLKSAQNDLRAAHGQVSQRYNELENMAEDSAEAVRRGNILLHSQQMKIEVQSRQIKRQEEDLLTLRQERELHLTKADQNASELAHVLRRERAGQGSIADAQAEVEELKGGLGHMREAFARHRCAMRKNQEVIDAHEKALKDTRSDLVSLSLEAEKQSVRHHQASADAAVEIARATADRNSAIRESGALRMEKEDLKDRLEEARRKLDEAQNNMGXXXXXXXXXXXXARSSAKPRGGHPKHTLQQQRTSPELNKVCTSPSATPGRQLEALATTAIS-----RSNSRQLLGESPLRQHQFIDGHNSRQGGGTGVVAKTQQRIKFAAPLRGAYDEAPAVAVSTTKEAAKAYRPSSSYSVQHGGVLHQTEVELPHE------DGTISSSHRL-SISRMPSSPRTFRQDSLPLSAASAADXXXXXXXXEKGSSTGDGGAHRNAGGASPKIG-TPKGHSDFAAPPNDGSPKESTVFRSEPYAMTRGARGVGNIAGSGVAGSEEGAFAGRHSRPRSPAAGTFGCDNRTHEIDGS-VVSPATASSPFPDGVGS-RKRPKKVAAGGDAATADRGGAPSIGRASSPPXP---STATSRQRNHFADENSRSDLVSLPGDDTFD----DSDALPDGVCPSCRDRPYGLMINCSECSRQHHSSCVPEGQTVGKGLAA-VFHCARCSNNKG 2772
DRVTLEIKGAKLNVA+QNALRR+RSHDRSP G TS VK+VALLK E+LRAG+REKED +TE IE LEA+L +AEAGRALTM+LV+TLKSAQNDLRA+H QVSQRY ELENM EDSAEAVRRGN+LLHSQQ+K + Q+RQIKRQ+EDL TLR+ERE L KAD+NA+ELA VLRRERAGQ SIADAQ EV +LK +AFA+HR +RK+QEVID HEKALKD RS L+SLSLEA+KQS RHHQASA+AA E ARATAD+N+A+RES ALR+EK+ LKD+LEEA RKLDE Q AR+S GGH + QQ T P+ N +S AT GR+ + A S +N+ Q+ ++ RQHQ G +S T + + ++ +Y APA + ++ + RPSSS + Q E LP E +G ++H + S S +P++ R + P XXXXXXXX S GD G +IG T H + + P + VF A RG R ++ G G+ F SR RSPA G D + DGS V A S D GS RKR K+ A D G S P P ATS + +HF + NSR PG+ + D D+ P+GVCPSC D PYGLMINCS C+RQ+HSSCVP+GQ VGKGL A VF C++C +N+G
Sbjct: 35 DRVTLEIKGAKLNVAIQNALRRKRSHDRSPVQG-------------------------------------------------TS---------VKDVALLKAAAENLRAGIREKEDVITEL----------------------------------IESLEAELAKAEAGRALTMSLVETLKSAQNDLRASHAQVSQRYAELENMLEDSAEAVRRGNVLLHSQQLKTDAQARQIKRQDEDLATLREERETQLAKADRNATELAQVLRRERAGQSSIADAQVEVGDLKAXXXXXXDAFAKHRGVVRKSQEVIDVHEKALKDARSKLLSLSLEADKQSSRHHQASAEAATETARATADKNAALRESRALRIEKDGLKDKLEEAGRKLDELQAQQSDSAAAMEAVA--ARNSVAVPGGH-NNNGPQQHTYPKPNSDSSSQVATRGRRQQDFENHAESIFDNGSANAPQVQIDNSPRQHQ---GRSSPPLLSVPTSLGTTTQGDNTSSVQRSYRAAPAEEAAEGQKLSSTNRPSSSTV-----FVRQAEAGLPREGALKSTNGRTDNNHNIPSSSPLPAAGVGRRSSASPAXXXXXXXXXXXXXXXXXRSGEGDAG----------RIGGTQIVHREVTTVSHSRGPND--VFDG---AGRRGQRDGTDVVDGGRRGASGLRF---RSRLRSPA----GTD---YSNDGSEAVRAAGGSVDGSDDAGSKRKRAKRGALEADXXXXXXXXXXXGGLTDSLPPPLLSGAATSSRLSHFDNGNSR------PGEKSVQVQGKDGDSTPEGVCPSCGDTPYGLMINCSGCARQYHSSCVPDGQKVGKGLGATVFLCSKCRSNEG 755
BLAST of mRNA_P-littoralis_Contig1038.3.2 vs. uniprot
Match: A0A6H5KZW7_9PHAE (PHD-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZW7_9PHAE) HSP 1 Score: 287 bits (735), Expect = 5.420e-82 Identity = 267/652 (40.95%), Postives = 345/652 (52.91%), Query Frame = 1
Query: 865 RYNELENMAEDSAEAVRRGNILLHSQQMKIEVQSRQIKRQEEDLLTLRQERELHLTKADQNASELAHVLRRERAGQGSIADAQAEVEELKGGLGHMREAFARHRCAMRKNQEVIDAHEKALKDTRSDLVSLSLEAEKQSVRHHQASADAAVEIARATADRNSAIRESGALRMEKEDLKDRLEEARRKLDEAQNNMGXXXXXXXXXXXXARSSAKPRGGHPKHTLQQQRTSPELNKVCTSPSATPGRQLEAL-----ATTAISRSNSRQLLGESPLRQHQFIDGHNSRQGGGTGVVAKTQQRIKFAAPLRGAYDEAPAVAVSTTKEAAKAYRPSSSYSVQHGGVL-HQTEVELPHE------DGTISSSHRL-SISRMPSSPRTFRQDSLPLSAASAADXXXXXXXXEKGSSTGDGGAHRNAGGASPKIGTPKGHSDFAAPPNDGSPKESTVFRSEPYAMTRGARGVGNIAGSGVAGSEEGAFAGRHSRPRSPAAGTFGCDNRTHEIDGSVVSPATASSPFPDGVGS-RKRPKKVAAGGDAATADRGGAP-SIGRASSPPXPSTATSRQR-NHFADENSR-SDLVSLPGDDTFDDSDALPDGVCPSCRDRPYGLMINCSECSRQHHSSCVPEGQTVGKGLAA-VFHCARCSNN 2766
RY ELENM EDSAEA+RRGN+LLHSQQ+K + Q+RQIKRQ+EDL TLR+ERE L KAD+NA+ELA VLRRERAGQ SIADAQ EV +LK L MR+AFA+ +RK+QEVI+AHEKALK+ RS+L+SLSLEA+KQS RHHQASA+AA E ARATAD+N+A+RES ALR+EKE LKD+LEEA R Q AR+SA +GGH ++ QQ T P+ N +S AT GR+ + T SN+ Q+ ++ RQ Q G +S T + ++ LR +Y V++ +EAA+ + SS++ VL Q E E P E +G ++H L S S P++ + P ++A XXXXXX + GD G P + T H+ DG+ R+ ++DGS D GS RKR K DAA + + SPP S AT+ R +HF N+R + V + G D+ +GVCPSC D PYGLMINCS C+RQ+HSSCVP+GQ VGKGL A VF C++CS N
Sbjct: 33 RYAELENMLEDSAEALRRGNVLLHSQQLKTDAQARQIKRQDEDLATLREERETQLAKADRNATELAQVLRRERAGQSSIADAQVEVGDLKAELAEMRDAFAKG--VVRKSQEVINAHEKALKNARSELLSLSLEADKQSSRHHQASAEAATETARATADKNAALRESRALRIEKEGLKDKLEEAGRXXXXLQAQRSELGAAMEAVA--ARNSAAVQGGH-SNSGPQQHTYPKPNSDSSSQVATRGRRQQDFEKHPECTYDNGSSNAPQVQIDNFPRQQQ---GRSSPPSLSVHTSLGTTTQGGASSSLRRSYR------VASAEEAAEGQKLSSTHRPSSKSVLSRQAEPESPREGALKSTNGRTDNNHSLPSSSPFPAAGVGRVASASPATSAXXXXXXXXXXTDRRKGGEGDAGRIGGTQNIDPDV-TAVSHNRGPNNVLDGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAARV----------DVDGS------------DDAGSKRKRAKTGPLEADAAXXXXXXXXXGLTDSLSPPLLSGATTSSRLSHFDAGNNRPGEAVQVQGKG----GDSTLEGVCPSCGDTPYGLMINCSGCARQYHSSCVPDGQKVGKGLGATVFLCSKCSGN 643 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1038.3.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1038.3.2 >prot_P-littoralis_Contig1038.3.2 ID=prot_P-littoralis_Contig1038.3.2|Name=mRNA_P-littoralis_Contig1038.3.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=925bp ERRAASDEATRYKARTQGGQGRRKAPSRREKALGYRSTCLALEQHHCPGGback to top mRNA from alignment at P-littoralis_Contig1038:55019..72276- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1038.3.2 ID=mRNA_P-littoralis_Contig1038.3.2|Name=mRNA_P-littoralis_Contig1038.3.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=17258bp|location=Sequence derived from alignment at P-littoralis_Contig1038:55019..72276- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1038:55019..72276- >mRNA_P-littoralis_Contig1038.3.2 ID=mRNA_P-littoralis_Contig1038.3.2|Name=mRNA_P-littoralis_Contig1038.3.2|organism=Pylaiella littoralis U1_48|type=CDS|length=2775bp|location=Sequence derived from alignment at P-littoralis_Contig1038:55019..72276- (Pylaiella littoralis U1_48)back to top |